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[Preprint]. 2023 Mar 26:2023.03.25.534227. [Version 2] doi: 10.1101/2023.03.25.534227

Integrated Drivers of Basal and Acute Immunity in Diverse Human Populations

Aisha Souquette, E Kaitlynn Allen, Christine M Oshansky, Li Tang, Sook-san Wong, Trushar Jeevan, Lei Shi, Stanley Pounds, George Elias, Guillermina Kuan, Angel Balmaseda, Raul Zapata, Kathryn Shaw-Saliba, Pierre Van Damme, Viggo Van Tendeloo, Juan Carlos Dib, Benson Ogunjimi, Richard Webby, Stacey Schultz-Cherry, Andrew Pekosz, Richard Rothman, Aubree Gordon, Paul G Thomas
PMCID: PMC10055315  PMID: 36993205

Abstract

Prior studies have identified genetic, infectious, and biological associations with immune competence and disease severity; however, there have been few integrative analyses of these factors and study populations are often limited in demographic diversity. Utilizing samples from 1,705 individuals in 5 countries, we examined putative determinants of immunity, including: single nucleotide polymorphisms, ancestry informative markers, herpesvirus status, age, and sex. In healthy subjects, we found significant differences in cytokine levels, leukocyte phenotypes, and gene expression. Transcriptional responses also varied by cohort, and the most significant determinant was ancestry. In influenza infected subjects, we found two disease severity immunophenotypes, largely driven by age. Additionally, cytokine regression models show each determinant differentially contributes to acute immune variation, with unique and interactive, location-specific herpesvirus effects. These results provide novel insight into the scope of immune heterogeneity across diverse populations, the integrative effects of factors which drive it, and the consequences for illness outcomes.

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