REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-HIF-1α rabbit monoclonal antibody, clone D1S7W (Western blot) | Cell Signaling Technology Inc. | 36169; RRID: AB_2799095 |
anti-α-tubulin mouse monoclonal antibody, clone DM1A (Western blot) | Cell Signaling Technology Inc. | 3873; RRID: AB_1904178 |
Anti-PGC-1alpha rabbit polyclonal (IHC) | Abcam | Ab84139; RRID: AB_1860776 |
Anti-NDUFA9 mouse monoclonal, clone 20C11B11B11 (IHC) | Abcam | Ab14713; RRID: AB_301431 |
Biological samples | ||
Tissue microarray in paraffin (human normal organs, custom) | IRIC Histology Platform, University of Montreal | N/A |
Human skin (unexposed forearm) sections in paraffin (young and aged non-diseased women) | Pageon et al.70 | N/A |
Chemicals, peptides, and recombinant proteins | ||
Capryloyl salicylic acid (C8-SA) | L’OREAL/ NOVEAL | N/A |
Dimethyl-2-oxoglutarate (dimethyl-2OG) | MilliporeSigma | 349631 |
Lipofectamine 2000 | Thermo Fisher Scientific | 11668027 |
Lipofectamine RNAiMAX | Thermo Fisher Scientific | 13778075 |
HiPerFect Transfrection Reagent | QIAGEN | 301704 |
4 siRNA duplexes against human PPARGC1A | QIAGEN | SI00101024, SI00101031, SI02639826, SI02639833 |
4 siRNA duplexes against human PPARGC1B | QIAGEN | SI03043306, SI0310431, SI00150024, SI02647911 |
AllStars non-targeting control siRNA | QIAGEN | SI03650318 |
13C5-L-glutamine | Cambridge Laboratories Inc. | CLM-1822 |
Western Lightning® Plus-ECL enhanced chemiluminescence substrate | Perkin-Elmer | NEL103E001EA |
Propidium iodide(PI)/RNase staining solution | Cell Signaling Technology Inc. | 4087 |
Polybrene (hexadimethrine bromide) | MilliporeSigma | 107687 |
Y-27632 ROCK inhibitor | MilliporeSigma | SCM075 |
Retinol | Sigma | R7632 |
Critical commercial assays | ||
Aurum Total RNA Mini Kit | Bio-Rad | 7326820 |
PureLink RNA Mini Kit | Thermo Fisher Scientific | 12183020 |
iScript cDNA synthesis kit | Bio-Rad | 1708890 |
High-Capacity cDNA Reverse Transcription Kit with RNase Inhibitor | Thermo Fisher Scientific | 4374966 |
SsoAdvanced Universal SYBR Green Supermix | Bio-Rad | 1725272 |
TaqMan Fast Advanced Master Mix | Thermo Fisher Scientific | 4444556 |
Seahorse XF Cell Mito Stress Test Kit | Agilent | 103015-100 |
PierceTM BCA protein assay | Thermo Fisher Scientific | 23227 |
Deposited data | ||
Raw and analyzed transcriptomic data | This paper | GEO: GSE108674 |
Experimental models: Cell lines | ||
Normal human epidermal keratinocytes (NHEK) | PromoCell | 12003 |
Normal human epidermal keratinocytes (NHEK) | Lonza | 192627 |
Normal human epidermal keratinocytes (NHEK) | Thermo Fisher Scientific | C0055C |
Normal human foreskin keratinocytes (reconstructed epidermis) | Episkin | N/A |
Human: HaCaT | Addexbio | T0020001 |
Human: HEK 293T | ATCC | CRL-3216 |
Software and algorithms | ||
DAVID Bioinformatics | Huang et al.71; Sherman et al.72 | SCR_001881 |
Gene Ontology | Ashburner et al.73; Gene Ontology Consortium74 | SCR_002811 |
R Project for Statistical Computing, R Bioconductor | R Foundation for Statistical Computing, (R Development Core Team, 2019) | SCR_001905 SCR_006442 |
GeneOverlap v.1.34.0 | Shen Lab | http://shenlab-sinai.github.io/shenlab-sinai/ |
Pscan | Zambelli et al.75 | http://159.149.160.88/pscan/ |
Gene Set Enrichment Analysis (GSEA) | Mootha et al.76; Subramanian et al.77 | SCR_003199 |
CytoScape | Shannon et al.78 | SCR_003032 |
Enrichment Map | Merico et al.79 | N/A |
Genotype-Tissue Expression (GTEX) | NIH Common Fund | SCR_013042 |
Correction for naturally occurring isotopes in-house JAVA program | Nanchen et al.80; McGuirk et al.81 | N/A |
FACSDivaTM software | BD Biosciences | SCR_001456 |
ImageScope software | Leica Biosystems | SCR_014311 |
Chemstation software | Agilent | SCR_015742 |