The title compound features a main twelve-membered difuryl ring with which the furan rings make dihedral angles of 76.14 (5) and 33.81 (5)°. In the crystal, C–H⋯O, C—H⋯F, C—H⋯π and C—F⋯π interactions link the molecules into the chains along the b-axis direction, forming sheets parallel to the (001) plane. These sheets are also connected by van der Waals interaction.
Keywords: crystal structure, twelve-membered heterocycles, furan, alkylation, piperidon, Hirshfeld surface analysis, Mannich reaction
Abstract
The title compound, C20H21F3N2O4, features a main twelve-membered difuryl ring with which the furan rings make dihedral angles of 76.14 (5) and 33.81 (5)°. The dihedral angle between the furan rings is 42.55 (7)°. The six-membered nitrogen heterocycle has a twist-boat conformation. In the crystal, pairs of molecules are connected by intermolecular C—H⋯O interactions, generating an R 2 2(14) ring motif. These pairs of molecules form zigzag chains along the a-axis direction by means of C—H⋯F interactions. Furthermore, C—H⋯π and C–F⋯π interactions link the molecules into chains along the b-axis direction, forming sheets parallel to the (001) plane. These sheets are also connected by van der Waals interactions.
1. Chemical context
Twelve-membered aza- and oxa-macrocycles possess a wide range of useful biological activities and exhibit a tendency to bind metal cations with their macrocyclic cavities (Simonov et al., 1993 ▸). For example, well-known naturally occurring macrocycles such as enniatins demonstrate a high cytotoxic activity (Levy et al., 1995 ▸; Ivanova et al., 2006 ▸) and azatri(tetra)pyrrolic macrocycles can be used as ion-pair receptors (Yadigarov et al., 2009 ▸). Chiral macrocycles with multiple non-covalent bonding sites show chiral recognition to different anions (Ema et al., 2014 ▸; Khalilov et al., 2021 ▸; Maharramov et al., 2010 ▸). S,N-Containing macrobicyclic azacryptands (Khabibullina et al., 2018 ▸; Naghiyev et al., 2020 ▸; Safavora et al., 2019 ▸) including dipyrrolylmethane subunits in their structures exhibit a high affinity to anions, especially the fluoride ion (Guchhait, et al., 2011 ▸; Shikhaliyev et al., 2018 ▸, 2019 ▸) and can be used as chemical delivery systems.
On the other hand, the Mannich reaction is an extensively used method for the construction of various types of polycyclic systems (Rivera et al., 2015 ▸; Ma et al., 2021 ▸; Mahmoudi et al., 2016 ▸), including those containing pyrroles (Jana et al., 2019). In order to create a short pathway to macrocycles possessing two different donating atoms in a twelve-membered ring, we used an acid-catalysed Mannich type reaction between 2,6-difuryl-substituted piperidone and N-substituted 1,5,3-dioxazepane (Fig. 1 ▸). The main goal of this study was to obtain the first representative of a twelve-membered difuryl containing rings and to establish its stereochemistry and non-covalent bond donor or acceptor ability (Gurbanov et al., 2020a
▸,b
▸; Mahmudov et al., 2021 ▸, 2022 ▸). The rings formed in this transformation can serve as precursors for studying the IMDAV (intramolecular Diels–Alder reaction of vinylarenes; Krishna, et al., 2022 ▸) and IMDAF (intramolecular Diels–Alder reaction of furans; Kvyatkovskaya et al., 2021a
▸,b
▸; Borisova, et al., 2018 ▸) reactions.
Figure 1.
The synthetic route.
2. Structural commentary
As shown in Fig. 2 ▸, the title compound has a main twelve-membered difuryl-containing ring (O18 /C2/C1/N17/C13/C12/O19/C9/C8/N7/C6/C5) to which the furan rings (O18/C2–C5 and O19/C9–C12) subtend dihedral angles of 76.14 (5) and 33.81 (5)°, respectively. The dihedral angle subtended by the furan ring is 42.55 (7)°. The six-membered nitrogen heterocycle (N17/C1/C13–C16) adopts a twist-boat conformation with puckering parameters (Cremer & Pople, 1975 ▸) Q T = 0.6999 (12) Å, θ = 90.12 (10)° and φ = 228.08 (10)°.
Figure 2.
Molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level.
3. Supramolecular features and Hirshfeld surface analysis
In the crystal, pairs of molecules are connected by intermolecular C—H⋯O interactions, forming an
(14) ring motif (Bernstein et al., 1995 ▸). These pairs of molecules form zigzag chains along the a-axis direction by C—H⋯F interactions (Table 1 ▸, Fig. 3 ▸). Furthermore, C—H⋯π and C—F⋯π interactions [C18—F1⋯Cg1i, C18⋯Cg1i = 3.9574 (14) Å, F1⋯Cg1i = 3.5265 (9) Å, C18—F1⋯Cg1i = 98.83 (6)° and C18—F3⋯Cg1i, C18⋯Cg1i = 3.9574 (14) Å, F1⋯Cg1i = 3.5496 (11) Å, C18—F1⋯Cg1i = 97.90 (7)° where Cg1 is the centroid of the O18/C2–C5 ring; symmetry code: (i)
+ x, y,
− z] link the molecules into chains along the b-axis direction, forming sheets parallel to the (001) plane (Table 1 ▸, Fig. 4 ▸). These sheets are also connected by van der Waals interactions.
Table 1. Hydrogen-bond geometry (Å, °).
Cg2 is the centroid of the O19/C9–C12 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C3—H3⋯O15i | 0.95 | 2.51 | 3.3809 (15) | 152 |
| C20—H20B⋯F3ii | 0.98 | 2.54 | 3.4700 (16) | 160 |
| C21—H21B⋯Cg2iii | 0.98 | 2.88 | 3.7561 (13) | 150 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Figure 3.
View down the b-axis showing the C—H⋯O and C—H⋯F hydrogen bonds (dashed lines).
Figure 4.
A general view in the unit cell of the C—H⋯π and C—F⋯π interactions (dashed lines). Symmetry codes: (iii) −x +
, y −
, z; (iv)
+ x, y,
− z.
Crystal Explorer17.5 (Turner et al., 2017 ▸) was used to perform a Hirshfeld surface analysis and to create the corresponding two-dimensional fingerprint plots, with the three-dimensional d norm surfaces plotted at a standard resolution of −0.1525 (red) to 1.7277 (blue) a.u (Fig. 5 ▸). The bright-red patches near atoms O15 and H20B on the Hirshfeld surface represent weak C—H⋯O and C—H⋯F interactions (Tables 1 ▸ and 2 ▸).
Figure 5.
(a) Front and (b) back views of the three-dimensional Hirshfeld surfaces of the title molecule.
Table 2. Summary of short interatomic contacts (Å) in the title compound.
| N7⋯H4 | 2.71 |
+ x, y,
− z
|
| F2⋯H19C | 2.65 | 1 − x, −
+ y,
− z
|
| H20B⋯F3 | 2.54 | 1 − x, 1 − y, 1 − z |
| H21A⋯H19A | 2.46 |
− x, 1 − y, −
+ z
|
| H20A⋯H16 | 2.48 | -x, 1 − y, 1 − z |
| H20C⋯H21B | 2.50 |
− x,
+ y, z
|
| H20A⋯H11 | 2.53 | −
+ x,
− y, 1 − z
|
The fingerprint plots (Fig. 6 ▸) show that H⋯H (44.9%), F⋯H/H⋯F (23.0%), O⋯H/H⋯O (16.7%) and C⋯H/H⋯C (8.5%) interactions contribute the most to surface contacts. The crystal packing is additionally influenced by F⋯C/C⋯F (3.0%), N⋯H/H⋯N (1.4%), F⋯O/O⋯F (0.9%), C⋯O/O⋯C (0.9%), O⋯O (0.5%) and C⋯C (0.1%) interactions. The Hirshfeld surface study confirms the significance of H-atom interactions in the packing formation. The large number of H⋯H, F⋯H/H⋯F, O⋯H/H⋯O and C⋯H/H⋯C interactions indicate that van der Waals interactions and hydrogen bonding are important in the crystal packing (Hathwar et al., 2015 ▸).
Figure 6.
Two-dimensional fingerprint plots for title molecules showing (a) all interactions, and delineated into (b) H⋯H, (c) F⋯H/H⋯F, (d) O⋯H/H⋯O and (e) C⋯H/H⋯C interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface.
4. Database survey
1,8,12,19,24,26-Hexaazapentacyclo[17.3.1.13,6.18,12.114,17]hexacosa-3,5,14,16-tetraene ethyl acetate solvate dihydrate (CSD refcode NOYCOW; Jana et al., 2019 ▸) is the most similar compound to the title found in a search of the Cambridge Structural Database (CSD, Version 5.42, update of September 2021; Groom et al., 2016 ▸). It crystallizes in the monoclinic space group I2/a (15) with Z = 8. The two pyrrolic NH atoms are oriented in the same direction. It exhibits a different conformation from the title compound: the furan rings in the title compound are almost normal to the mean plane of the main twelve-membered difuryl-containing ring and their oxygen atoms are oriented to the opposite sides whereas in NOYCOW, they are also almost normal, but are on the same side.
5. Synthesis and crystallization
A mixture of N-trifluoro-acylated piperodone (2.6 mmol), 3-methyl-1,5,3-dioxazepane (2.7 mmol) and Me3SiCl (1.1 mL, 8.6 mmol) in dry dichloromethane (CH2Cl2) (5 mL) was left for 5 days under an argon atmosphere without stirring. The reaction mixture was then poured into water (30 mL) and basified with solid K2CO3 until the pH was 9–10. The organic products were extracted with CH2Cl2 (2 × 20 mL) and dried over anhydrous Na2SO4. After evaporation of the solvent, the crude residue was purified by column chromatography on silica gel (ethyl acetate/hexane, from 1:20 to 1:4) and then the resulting solid fractions were recrystallized from a chloroform/hexane mixture to give the macrocycle as a white solid. Single crystals were obtained by slow crystallization from a hexane/chloroform mixture.
Yield 20% (0.21 g), m.p. 420–422 K. 1H NMR (700 MHz, CDCl3) δ (J, Hz): 6.24 (br.s, 2H), 6.19 (br.s, 1H), 6.02 (d, J = 2.9 Hz, 1H), 5.28 (s, 1H), 5.11 (d, J = 9.5 Hz, 1H), 3.86 (d, J = 15.5 Hz, 1H), 3.76 (d, J = 15.3 Hz, 1H), 3.71 (s, 2H), 3.55–3.49 (m, 1H), 3.20 (q, J = 7.2 Hz, 1H), 2.35 (s, 3H), 1.36 (d, J = 7.2 Hz, 3H), 1.08 (d, J = 6.4 Hz, 3H); 13C{1H} NMR (176 MHz, CDCl3) δ 208.8, 156.5 (q, J = 36.5 Hz), 154.7, 152.3, 149.9, 148.6, 116.3 (q, J = 289.0 Hz), 111.4, 109.9, 109.8, 109.6, 57.2, 56.9, 53.3, 49.6, 44.7, 42.8, 42.0, 15.7, 12.9; HRMS (ESI) m/z: [M + H]+ 411.; Analysis calculated for C20H21F3N2O4 %: C 58.53, H 5.16, N 6.83. Found: C 58.54, H 5.17, N 6.83.
6. Refinement
Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. Carbon-bound H atoms were placed in calculated positions [C—H = 0.95–1.00 Å; U iso(H) = 1.2 or 1.5U eq(C)] and were included in the refinement in the riding-model approximation. Owing to poor agreement between observed and calculated intensities, twenty three outliers (0 0 6, 4 0 12, 5 1 6, 3 6 3, 4 8 5, 4 5 5, 12 11 0, 0 6 3, 4 7 5, 1 0 8, 1 1 2, 0 4 9, 6 5 2, 4 8 0, 3 6 7, 7 1 1, 4 1 9, 5 0 6, 0 0 2, 2 1 7, 4 2 8, 4 4 5, 2 5 5) were omitted during the final refinement cycle.
Table 3. Experimental details.
| Crystal data | |
| Chemical formula | C20H21F3N2O4 |
| M r | 410.39 |
| Crystal system, space group | Orthorhombic, P b c a |
| Temperature (K) | 100 |
| a, b, c (Å) | 11.1351 (1), 17.0545 (2), 19.9131 (3) |
| V (Å3) | 3781.57 (8) |
| Z | 8 |
| Radiation type | Cu Kα |
| μ (mm−1) | 1.03 |
| Crystal size (mm) | 0.25 × 0.20 × 0.20 |
| Data collection | |
| Diffractometer | XtaLAB Synergy, Dualflex, HyPix |
| Absorption correction | Multi-scan (CrysAlis PRO; Rigaku OD, 2021 ▸) |
| T min, T max | 0.761, 0.801 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 24690, 4040, 3752 |
| R int | 0.031 |
| (sin θ/λ)max (Å−1) | 0.637 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.037, 0.102, 1.03 |
| No. of reflections | 4040 |
| No. of parameters | 265 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.32, −0.21 |
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989023001986/tx2063sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989023001986/tx2063Isup2.hkl
CCDC reference: 2245808
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors’ contributions are as follows. Conceptualization, MA, AAE and AB; synthesis, AAE, MSG and BGMR; X-ray analysis, SÖY and MA; writing (review and editing of the manuscript) SÖY, MA and AB; funding acquisition, AAE and MSG; supervision, MA, AAE and AB.
supplementary crystallographic information
Crystal data
| C20H21F3N2O4 | Dx = 1.442 Mg m−3 |
| Mr = 410.39 | Cu Kα radiation, λ = 1.54184 Å |
| Orthorhombic, Pbca | Cell parameters from 15774 reflections |
| a = 11.1351 (1) Å | θ = 2.2–78.7° |
| b = 17.0545 (2) Å | µ = 1.03 mm−1 |
| c = 19.9131 (3) Å | T = 100 K |
| V = 3781.57 (8) Å3 | Prism, colourless |
| Z = 8 | 0.25 × 0.20 × 0.20 mm |
| F(000) = 1712 |
Data collection
| XtaLAB Synergy, Dualflex, HyPix diffractometer | 3752 reflections with I > 2σ(I) |
| Radiation source: micro-focus sealed X-ray tube | Rint = 0.031 |
| φ and ω scans | θmax = 79.3°, θmin = 5.2° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2021) | h = −12→14 |
| Tmin = 0.761, Tmax = 0.801 | k = −20→21 |
| 24690 measured reflections | l = −25→25 |
| 4040 independent reflections |
Refinement
| Refinement on F2 | Primary atom site location: difference Fourier map |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.102 | H-atom parameters constrained |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.0586P)2 + 1.2514P] where P = (Fo2 + 2Fc2)/3 |
| 4040 reflections | (Δ/σ)max = 0.001 |
| 265 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
Special details
| Experimental. CrysAlisPro 1.171.41.117a (Rigaku OD, 2021) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| F1 | 0.46254 (7) | 0.40849 (4) | 0.69241 (4) | 0.03490 (19) | |
| F2 | 0.47797 (8) | 0.35558 (4) | 0.59393 (4) | 0.0394 (2) | |
| F3 | 0.62779 (7) | 0.41697 (5) | 0.63772 (5) | 0.0411 (2) | |
| C1 | 0.25270 (10) | 0.46229 (6) | 0.61741 (6) | 0.0228 (2) | |
| H1 | 0.2891 | 0.4136 | 0.6366 | 0.027* | |
| C2 | 0.18508 (10) | 0.50270 (6) | 0.67299 (6) | 0.0234 (2) | |
| C3 | 0.06815 (11) | 0.52036 (7) | 0.68327 (6) | 0.0269 (2) | |
| H3 | 0.0021 | 0.5056 | 0.6559 | 0.032* | |
| C4 | 0.06377 (11) | 0.56583 (7) | 0.74372 (6) | 0.0287 (3) | |
| H4 | −0.0059 | 0.5875 | 0.7641 | 0.034* | |
| C5 | 0.17741 (11) | 0.57194 (7) | 0.76607 (6) | 0.0264 (2) | |
| C6 | 0.23342 (11) | 0.61600 (7) | 0.82269 (6) | 0.0291 (3) | |
| H6A | 0.1701 | 0.6439 | 0.8481 | 0.035* | |
| H6B | 0.2730 | 0.5786 | 0.8536 | 0.035* | |
| N7 | 0.32220 (10) | 0.67275 (6) | 0.79832 (5) | 0.0295 (2) | |
| C8 | 0.27337 (13) | 0.73574 (7) | 0.75550 (7) | 0.0337 (3) | |
| H8A | 0.2940 | 0.7876 | 0.7747 | 0.040* | |
| H8B | 0.1848 | 0.7315 | 0.7532 | 0.040* | |
| C9 | 0.32582 (12) | 0.72806 (7) | 0.68700 (6) | 0.0299 (3) | |
| C10 | 0.42408 (12) | 0.75661 (7) | 0.65530 (7) | 0.0318 (3) | |
| H10 | 0.4722 | 0.7997 | 0.6692 | 0.038* | |
| C11 | 0.44143 (11) | 0.70908 (7) | 0.59651 (6) | 0.0286 (3) | |
| H11 | 0.5035 | 0.7143 | 0.5641 | 0.034* | |
| C12 | 0.35196 (10) | 0.65556 (7) | 0.59651 (6) | 0.0246 (2) | |
| C13 | 0.32223 (10) | 0.58544 (6) | 0.55457 (6) | 0.0230 (2) | |
| H13 | 0.3733 | 0.5873 | 0.5133 | 0.028* | |
| C14 | 0.18934 (10) | 0.58564 (6) | 0.53217 (6) | 0.0247 (2) | |
| H14 | 0.1393 | 0.5980 | 0.5725 | 0.030* | |
| C15 | 0.15409 (10) | 0.50470 (7) | 0.50819 (6) | 0.0243 (2) | |
| O15 | 0.11156 (8) | 0.49283 (5) | 0.45311 (4) | 0.0309 (2) | |
| C16 | 0.17334 (10) | 0.43780 (7) | 0.55769 (6) | 0.0250 (2) | |
| H16 | 0.0930 | 0.4225 | 0.5759 | 0.030* | |
| N17 | 0.35219 (9) | 0.51181 (5) | 0.59182 (5) | 0.0220 (2) | |
| C17 | 0.47033 (10) | 0.49467 (7) | 0.59476 (6) | 0.0244 (2) | |
| O17 | 0.54942 (7) | 0.53360 (5) | 0.56885 (4) | 0.0294 (2) | |
| O18 | 0.25418 (7) | 0.53151 (5) | 0.72431 (4) | 0.02384 (18) | |
| C18 | 0.50906 (11) | 0.41827 (7) | 0.63123 (7) | 0.0303 (3) | |
| O19 | 0.27850 (8) | 0.66728 (5) | 0.65050 (4) | 0.02727 (19) | |
| C19 | 0.39990 (13) | 0.70224 (8) | 0.85115 (7) | 0.0353 (3) | |
| H19A | 0.4331 | 0.6581 | 0.8766 | 0.053* | |
| H19B | 0.3534 | 0.7360 | 0.8813 | 0.053* | |
| H19C | 0.4656 | 0.7325 | 0.8312 | 0.053* | |
| C20 | 0.16602 (12) | 0.64922 (7) | 0.48000 (7) | 0.0320 (3) | |
| H20A | 0.0798 | 0.6519 | 0.4704 | 0.048* | |
| H20B | 0.2098 | 0.6368 | 0.4387 | 0.048* | |
| H20C | 0.1934 | 0.6999 | 0.4974 | 0.048* | |
| C21 | 0.22552 (12) | 0.36654 (7) | 0.52092 (6) | 0.0311 (3) | |
| H21A | 0.1701 | 0.3501 | 0.4854 | 0.047* | |
| H21B | 0.2367 | 0.3234 | 0.5528 | 0.047* | |
| H21C | 0.3031 | 0.3806 | 0.5011 | 0.047* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| F1 | 0.0367 (4) | 0.0339 (4) | 0.0340 (4) | 0.0041 (3) | −0.0030 (3) | 0.0081 (3) |
| F2 | 0.0474 (5) | 0.0240 (4) | 0.0468 (5) | 0.0084 (3) | −0.0041 (4) | −0.0032 (3) |
| F3 | 0.0281 (4) | 0.0407 (4) | 0.0544 (5) | 0.0110 (3) | −0.0028 (3) | 0.0045 (4) |
| C1 | 0.0233 (5) | 0.0194 (5) | 0.0258 (5) | −0.0018 (4) | 0.0010 (4) | 0.0013 (4) |
| C2 | 0.0253 (5) | 0.0218 (5) | 0.0231 (5) | −0.0035 (4) | −0.0007 (4) | 0.0007 (4) |
| C3 | 0.0231 (5) | 0.0307 (6) | 0.0270 (6) | −0.0025 (4) | −0.0004 (4) | 0.0010 (5) |
| C4 | 0.0246 (6) | 0.0337 (6) | 0.0279 (6) | 0.0002 (5) | 0.0034 (4) | −0.0007 (5) |
| C5 | 0.0270 (6) | 0.0270 (6) | 0.0253 (6) | −0.0001 (4) | 0.0031 (4) | −0.0018 (4) |
| C6 | 0.0297 (6) | 0.0311 (6) | 0.0266 (6) | −0.0015 (5) | 0.0011 (5) | −0.0028 (5) |
| N7 | 0.0329 (5) | 0.0269 (5) | 0.0288 (5) | −0.0024 (4) | −0.0017 (4) | −0.0021 (4) |
| C8 | 0.0418 (7) | 0.0249 (6) | 0.0345 (7) | 0.0014 (5) | −0.0018 (5) | −0.0041 (5) |
| C9 | 0.0377 (7) | 0.0207 (5) | 0.0313 (6) | −0.0007 (5) | −0.0051 (5) | −0.0011 (4) |
| C10 | 0.0389 (7) | 0.0211 (5) | 0.0353 (7) | −0.0056 (5) | −0.0071 (5) | 0.0025 (5) |
| C11 | 0.0300 (6) | 0.0228 (5) | 0.0330 (6) | −0.0038 (4) | −0.0018 (5) | 0.0053 (5) |
| C12 | 0.0266 (5) | 0.0205 (5) | 0.0268 (5) | 0.0005 (4) | −0.0016 (4) | 0.0033 (4) |
| C13 | 0.0233 (5) | 0.0200 (5) | 0.0256 (5) | −0.0008 (4) | 0.0005 (4) | 0.0030 (4) |
| C14 | 0.0245 (5) | 0.0228 (5) | 0.0268 (6) | 0.0003 (4) | −0.0011 (4) | 0.0016 (4) |
| C15 | 0.0198 (5) | 0.0262 (5) | 0.0269 (6) | −0.0006 (4) | 0.0016 (4) | −0.0010 (4) |
| O15 | 0.0305 (4) | 0.0344 (5) | 0.0278 (4) | −0.0005 (4) | −0.0040 (4) | −0.0028 (3) |
| C16 | 0.0263 (5) | 0.0222 (5) | 0.0265 (6) | −0.0048 (4) | 0.0011 (4) | −0.0007 (4) |
| N17 | 0.0222 (5) | 0.0185 (4) | 0.0255 (5) | 0.0001 (3) | 0.0014 (4) | 0.0017 (3) |
| C17 | 0.0236 (5) | 0.0239 (5) | 0.0258 (6) | 0.0011 (4) | 0.0004 (4) | −0.0019 (4) |
| O17 | 0.0234 (4) | 0.0325 (4) | 0.0322 (5) | −0.0013 (3) | 0.0020 (3) | 0.0012 (3) |
| O18 | 0.0223 (4) | 0.0246 (4) | 0.0246 (4) | −0.0010 (3) | 0.0001 (3) | −0.0021 (3) |
| C18 | 0.0290 (6) | 0.0270 (6) | 0.0349 (6) | 0.0049 (5) | −0.0005 (5) | 0.0008 (5) |
| O19 | 0.0299 (4) | 0.0235 (4) | 0.0284 (4) | −0.0026 (3) | 0.0005 (3) | −0.0017 (3) |
| C19 | 0.0393 (7) | 0.0340 (6) | 0.0326 (7) | −0.0059 (5) | −0.0025 (5) | −0.0057 (5) |
| C20 | 0.0332 (6) | 0.0273 (6) | 0.0355 (6) | 0.0005 (5) | −0.0059 (5) | 0.0059 (5) |
| C21 | 0.0407 (7) | 0.0219 (5) | 0.0307 (6) | −0.0039 (5) | 0.0015 (5) | −0.0030 (5) |
Geometric parameters (Å, º)
| F1—C18 | 1.3344 (15) | C11—C12 | 1.3511 (16) |
| F2—C18 | 1.3470 (15) | C11—H11 | 0.9500 |
| F3—C18 | 1.3286 (15) | C12—O19 | 1.3655 (14) |
| C1—N17 | 1.4833 (14) | C12—C13 | 1.4958 (15) |
| C1—C2 | 1.5056 (16) | C13—N17 | 1.4961 (13) |
| C1—C16 | 1.5393 (16) | C13—C14 | 1.5455 (16) |
| C1—H1 | 1.0000 | C13—H13 | 1.0000 |
| C2—C3 | 1.3521 (17) | C14—C15 | 1.5125 (16) |
| C2—O18 | 1.3702 (14) | C14—C20 | 1.5239 (16) |
| C3—C4 | 1.4328 (17) | C14—H14 | 1.0000 |
| C3—H3 | 0.9500 | C15—O15 | 1.2117 (15) |
| C4—C5 | 1.3454 (17) | C15—C16 | 1.5230 (16) |
| C4—H4 | 0.9500 | C16—C21 | 1.5333 (16) |
| C5—O18 | 1.3776 (14) | C16—H16 | 1.0000 |
| C5—C6 | 1.4916 (16) | N17—C17 | 1.3489 (15) |
| C6—N7 | 1.4661 (16) | C17—O17 | 1.2176 (15) |
| C6—H6A | 0.9900 | C17—C18 | 1.5527 (16) |
| C6—H6B | 0.9900 | C19—H19A | 0.9800 |
| N7—C19 | 1.4520 (16) | C19—H19B | 0.9800 |
| N7—C8 | 1.4755 (17) | C19—H19C | 0.9800 |
| C8—C9 | 1.4895 (19) | C20—H20A | 0.9800 |
| C8—H8A | 0.9900 | C20—H20B | 0.9800 |
| C8—H8B | 0.9900 | C20—H20C | 0.9800 |
| C9—C10 | 1.3537 (19) | C21—H21A | 0.9800 |
| C9—O19 | 1.3713 (14) | C21—H21B | 0.9800 |
| C10—C11 | 1.4370 (18) | C21—H21C | 0.9800 |
| C10—H10 | 0.9500 | ||
| N17—C1—C2 | 111.43 (9) | N17—C13—H13 | 107.9 |
| N17—C1—C16 | 108.54 (9) | C14—C13—H13 | 107.9 |
| C2—C1—C16 | 113.89 (9) | C15—C14—C20 | 112.95 (10) |
| N17—C1—H1 | 107.6 | C15—C14—C13 | 109.73 (9) |
| C2—C1—H1 | 107.6 | C20—C14—C13 | 111.19 (10) |
| C16—C1—H1 | 107.6 | C15—C14—H14 | 107.6 |
| C3—C2—O18 | 110.37 (10) | C20—C14—H14 | 107.6 |
| C3—C2—C1 | 134.01 (11) | C13—C14—H14 | 107.6 |
| O18—C2—C1 | 115.57 (10) | O15—C15—C14 | 122.66 (11) |
| C2—C3—C4 | 106.29 (10) | O15—C15—C16 | 121.05 (10) |
| C2—C3—H3 | 126.9 | C14—C15—C16 | 116.28 (10) |
| C4—C3—H3 | 126.9 | C15—C16—C21 | 109.76 (10) |
| C5—C4—C3 | 106.73 (11) | C15—C16—C1 | 112.18 (9) |
| C5—C4—H4 | 126.6 | C21—C16—C1 | 111.50 (10) |
| C3—C4—H4 | 126.6 | C15—C16—H16 | 107.7 |
| C4—C5—O18 | 110.19 (10) | C21—C16—H16 | 107.7 |
| C4—C5—C6 | 133.02 (11) | C1—C16—H16 | 107.7 |
| O18—C5—C6 | 116.68 (10) | C17—N17—C1 | 126.16 (9) |
| N7—C6—C5 | 111.36 (10) | C17—N17—C13 | 114.89 (9) |
| N7—C6—H6A | 109.4 | C1—N17—C13 | 118.79 (9) |
| C5—C6—H6A | 109.4 | O17—C17—N17 | 124.67 (11) |
| N7—C6—H6B | 109.4 | O17—C17—C18 | 117.06 (11) |
| C5—C6—H6B | 109.4 | N17—C17—C18 | 118.23 (10) |
| H6A—C6—H6B | 108.0 | C2—O18—C5 | 106.33 (9) |
| C19—N7—C6 | 113.00 (10) | F3—C18—F1 | 107.18 (11) |
| C19—N7—C8 | 112.71 (10) | F3—C18—F2 | 107.23 (10) |
| C6—N7—C8 | 115.05 (10) | F1—C18—F2 | 107.72 (10) |
| N7—C8—C9 | 108.70 (10) | F3—C18—C17 | 109.62 (10) |
| N7—C8—H8A | 109.9 | F1—C18—C17 | 115.10 (10) |
| C9—C8—H8A | 109.9 | F2—C18—C17 | 109.68 (10) |
| N7—C8—H8B | 109.9 | C12—O19—C9 | 107.32 (9) |
| C9—C8—H8B | 109.9 | N7—C19—H19A | 109.5 |
| H8A—C8—H8B | 108.3 | N7—C19—H19B | 109.5 |
| C10—C9—O19 | 109.59 (11) | H19A—C19—H19B | 109.5 |
| C10—C9—C8 | 135.42 (12) | N7—C19—H19C | 109.5 |
| O19—C9—C8 | 113.66 (11) | H19A—C19—H19C | 109.5 |
| C9—C10—C11 | 106.59 (11) | H19B—C19—H19C | 109.5 |
| C9—C10—H10 | 126.7 | C14—C20—H20A | 109.5 |
| C11—C10—H10 | 126.7 | C14—C20—H20B | 109.5 |
| C12—C11—C10 | 106.38 (11) | H20A—C20—H20B | 109.5 |
| C12—C11—H11 | 126.8 | C14—C20—H20C | 109.5 |
| C10—C11—H11 | 126.8 | H20A—C20—H20C | 109.5 |
| C11—C12—O19 | 110.05 (10) | H20B—C20—H20C | 109.5 |
| C11—C12—C13 | 134.69 (11) | C16—C21—H21A | 109.5 |
| O19—C12—C13 | 115.09 (10) | C16—C21—H21B | 109.5 |
| C12—C13—N17 | 110.17 (9) | H21A—C21—H21B | 109.5 |
| C12—C13—C14 | 111.80 (9) | C16—C21—H21C | 109.5 |
| N17—C13—C14 | 111.01 (9) | H21A—C21—H21C | 109.5 |
| C12—C13—H13 | 107.9 | H21B—C21—H21C | 109.5 |
| N17—C1—C2—C3 | 125.68 (14) | O15—C15—C16—C21 | 42.86 (15) |
| C16—C1—C2—C3 | 2.49 (18) | C14—C15—C16—C21 | −137.91 (10) |
| N17—C1—C2—O18 | −51.30 (13) | O15—C15—C16—C1 | 167.40 (11) |
| C16—C1—C2—O18 | −174.48 (9) | C14—C15—C16—C1 | −13.37 (14) |
| O18—C2—C3—C4 | 2.27 (13) | N17—C1—C16—C15 | −40.88 (12) |
| C1—C2—C3—C4 | −174.82 (12) | C2—C1—C16—C15 | 83.87 (12) |
| C2—C3—C4—C5 | −0.54 (14) | N17—C1—C16—C21 | 82.69 (11) |
| C3—C4—C5—O18 | −1.37 (14) | C2—C1—C16—C21 | −152.56 (10) |
| C3—C4—C5—C6 | 174.71 (13) | C2—C1—N17—C17 | 116.85 (12) |
| C4—C5—C6—N7 | −118.73 (15) | C16—C1—N17—C17 | −116.96 (12) |
| O18—C5—C6—N7 | 57.15 (14) | C2—C1—N17—C13 | −67.88 (12) |
| C5—C6—N7—C19 | −165.25 (11) | C16—C1—N17—C13 | 58.31 (12) |
| C5—C6—N7—C8 | 63.35 (13) | C12—C13—N17—C17 | −75.59 (12) |
| C19—N7—C8—C9 | 112.65 (12) | C14—C13—N17—C17 | 160.03 (10) |
| C6—N7—C8—C9 | −115.81 (12) | C12—C13—N17—C1 | 108.62 (11) |
| N7—C8—C9—C10 | −90.45 (17) | C14—C13—N17—C1 | −15.77 (13) |
| N7—C8—C9—O19 | 74.55 (13) | C1—N17—C17—O17 | 174.16 (11) |
| O19—C9—C10—C11 | −1.95 (14) | C13—N17—C17—O17 | −1.27 (17) |
| C8—C9—C10—C11 | 163.48 (14) | C1—N17—C17—C18 | −3.30 (17) |
| C9—C10—C11—C12 | 0.47 (14) | C13—N17—C17—C18 | −178.73 (10) |
| C10—C11—C12—O19 | 1.19 (13) | C3—C2—O18—C5 | −3.10 (12) |
| C10—C11—C12—C13 | −173.65 (12) | C1—C2—O18—C5 | 174.59 (9) |
| C11—C12—C13—N17 | 103.88 (15) | C4—C5—O18—C2 | 2.73 (13) |
| O19—C12—C13—N17 | −70.77 (12) | C6—C5—O18—C2 | −174.06 (10) |
| C11—C12—C13—C14 | −132.19 (14) | O17—C17—C18—F3 | 11.43 (15) |
| O19—C12—C13—C14 | 53.16 (13) | N17—C17—C18—F3 | −170.92 (10) |
| C12—C13—C14—C15 | −163.52 (9) | O17—C17—C18—F1 | 132.31 (12) |
| N17—C13—C14—C15 | −40.06 (12) | N17—C17—C18—F1 | −50.03 (15) |
| C12—C13—C14—C20 | 70.80 (12) | O17—C17—C18—F2 | −106.05 (12) |
| N17—C13—C14—C20 | −165.74 (10) | N17—C17—C18—F2 | 71.60 (14) |
| C20—C14—C15—O15 | −0.18 (16) | C11—C12—O19—C9 | −2.39 (13) |
| C13—C14—C15—O15 | −124.85 (12) | C13—C12—O19—C9 | 173.57 (9) |
| C20—C14—C15—C16 | −179.39 (10) | C10—C9—O19—C12 | 2.69 (13) |
| C13—C14—C15—C16 | 55.94 (13) | C8—C9—O19—C12 | −166.19 (10) |
Hydrogen-bond geometry (Å, º)
Cg2 is the centroid of the O19/C9–C12 ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| C1—H1···F1 | 1.00 | 2.23 | 2.9210 (14) | 125 |
| C1—H1···F2 | 1.00 | 2.47 | 3.1341 (14) | 123 |
| C3—H3···O15i | 0.95 | 2.51 | 3.3809 (15) | 152 |
| C14—H14···O19 | 1.00 | 2.49 | 2.9114 (14) | 105 |
| C20—H20B···F3ii | 0.98 | 2.54 | 3.4700 (16) | 160 |
| C21—H21B···Cg2iii | 0.98 | 2.88 | 3.7561 (13) | 150 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, −y+1, −z+1; (iii) −x+1/2, y−1/2, z.
References
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
- Borisova, K. K., Nikitina, E. V., Novikov, R. A., Khrustalev, V. N., Dorovatovskii, P. V., Zubavichus, Y. V., Kuznetsov, M. L., Zaytsev, V. P., Varlamov, A. V. & Zubkov, F. I. (2018). Chem. Commun. 54, 2850–2853. [DOI] [PubMed]
- Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358.
- Ema, T., Okuda, K., Watanabe, S., Yamasaki, T., Minami, T., Esipenko, N. A. & Anzenbacher, P. (2014). Org. Lett. 16, 1302–1305. [DOI] [PubMed]
- Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
- Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. [DOI] [PMC free article] [PubMed]
- Guchhait, T. & Mani, G. (2011). J. Org. Chem. 76, 10114–10121. [DOI] [PubMed]
- Gurbanov, A. V., Kuznetsov, M. L., Demukhamedova, S. D., Alieva, I. N., Godjaev, N. M., Zubkov, F. I., Mahmudov, K. T. & Pombeiro, A. J. L. (2020a). CrystEngComm, 22, 628–633.
- Gurbanov, A. V., Kuznetsov, M. L., Mahmudov, K. T., Pombeiro, A. J. L. & Resnati, G. (2020b). Chem. Eur. J. 26, 14833–14837. [DOI] [PubMed]
- Hathwar, V. R., Sist, M., Jørgensen, M. R. V., Mamakhel, A. H., Wang, X., Hoffmann, C. M., Sugimoto, K., Overgaard, J. & Iversen, B. B. (2015). IUCrJ, 2, 563–574. [DOI] [PMC free article] [PubMed]
- Ivanova, L., Skjerve, E., Eriksen, G. S. & Uhlig, S. (2006). Toxicon, 47, 868–876. [DOI] [PubMed]
- Jana, D., Guchhait, T., Subramaniyan, V., Kumar, A. & Mani, G. (2019). Tetrahedron Lett. 60, 151247–151250.
- Khabibullina, G. R., Fedotova, E. S., Tyumkina, T. V., Abdullin, M. F., Ibragimov, A. G. & Dzhemilev, U. M. (2018). Chem. Heterocycl. C. 54, 744–750.
- Khalilov, A. N., Tüzün, B., Taslimi, P., Tas, A., Tuncbilek, Z. & Cakmak, N. K. (2021). J. Mol. Liq. 344, 117761.
- Krishna, G., Grudinin, D. G., Nikitina, E. V. & Zubkov, F. I. (2022). Synthesis, 54, 797–863.
- Kvyatkovskaya, E. A., Borisova, K. K., Epifanova, P. P., Senin, A. A., Khrustalev, V. N., Grigoriev, M. S., Bunev, A. S., Gasanov, R. E., Polyanskii, K. B. & Zubkov, F. I. (2021a). New J. Chem. 45, 19497–19505.
- Kvyatkovskaya, E. A., Epifanova, P. P., Nikitina, E. V., Senin, A. A., Khrustalev, V. N., Polyanskii, K. B. & Zubkov, F. I. (2021b). New J. Chem. 45, 3400–3407.
- Levy, D., Bluzat, A., Seigneuret, M. & Rigaud, J.-L. (1995). Biochem. Pharmacol. 50, 2105–2107. [DOI] [PubMed]
- Ma, Z., Mahmudov, K. T., Aliyeva, V. A., Gurbanov, A. V., Guedes da Silva, M. F. C. & Pombeiro, A. J. L. (2021). Coord. Chem. Rev. 437, 213859.
- Maharramov, A. M., Aliyeva, R. A., Aliyev, I. A., Pashaev, F. G., Gasanov, A. G., Azimova, S. I., Askerov, R. K., Kurbanov, A. V. & Mahmudov, K. T. (2010). Dyes Pigments, 85, 1–6.
- Mahmoudi, G., Bauzá, A., Gurbanov, A. V., Zubkov, F. I., Maniukiewicz, W., Rodríguez-Diéguez, A., López-Torres, E. & Frontera, A. (2016). CrystEngComm, 18, 9056–9066.
- Mahmudov, K. T., Gurbanov, A. V., Aliyeva, V. A., Guedes da Silva, M. F. C., Resnati, G. & Pombeiro, A. J. L. (2022). Coord. Chem. Rev. 464, 214556.
- Mahmudov, K. T., Huseynov, F. E., Aliyeva, V. A., Guedes da Silva, M. F. C. & Pombeiro, A. J. L. (2021). Chem. Eur. J. 27, 14370–14389. [DOI] [PubMed]
- Naghiyev, F. N., Cisterna, J., Khalilov, A. N., Maharramov, A. M., Askerov, R. K., Asadov, K. A., Mamedov, I. G., Salmanli, K. S., Cárdenas, A. & Brito, I. (2020). Molecules, 25, 2235–2248. [DOI] [PMC free article] [PubMed]
- Rigaku OD (2021). CrysAlis PRO. Rigaku Oxford Diffraction, Yarnton, England.
- Rivera, A., Nerio, L. S. & Quevedo, R. (2015). Tetrahedron Lett. 56, 6059–6062.
- Safavora, A. S., Brito, I., Cisterna, J., Cárdenas, A., Huseynov, E. Z., Khalilov, A. N., Naghiyev, F. N., Askerov, R. K. & Maharramov, A. M. Z. (2019). Kristallogr. New Cryst. Struct. 234, 1183–1185.
- Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
- Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
- Shikhaliyev, N. Q., Ahmadova, N. E., Gurbanov, A. V., Maharramov, A. M., Mammadova, G. Z., Nenajdenko, V. G., Zubkov, F. I., Mahmudov, K. T. & Pombeiro, A. J. L. (2018). Dyes Pigments, 150, 377–381.
- Shikhaliyev, N. Q., Kuznetsov, M. L., Maharramov, A. M., Gurbanov, A. V., Ahmadova, N. E., Nenajdenko, V. G., Mahmudov, K. T. & Pombeiro, A. J. L. (2019). CrystEngComm, 21, 5032–5038.
- Simonov, Y. A., Dvorkin, A. A., Fonari, M. S., Malinowski, T. I., Luboch, E., Cygan, A., Biernat, J. F., Ganin, E. V. & Popkov, Y. A. (1993). J. Inclusion Phenom. Mol. Recognit. Chem. 15, 79–89.
- Spek, A. L. (2020). Acta Cryst. E76, 1–11. [DOI] [PMC free article] [PubMed]
- Turner, M. J., McKinnon, J. J., Wolff, S. K., Grimwood, D. J., Spackman, P. R., Jayatilaka, D. & Spackman, M. A. (2017). CrystalExplorer17.5. University of Western Australia.http://hirshfeldsuface.net
- Yadigarov, R. R., Khalilov, A. N., Mamedov, I. G., Nagiev, F. N., Magerramov, A. M. & Allakhverdiev, M. A. (2009). Russ. J. Org. Chem. 45, 1856–1858.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989023001986/tx2063sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989023001986/tx2063Isup2.hkl
CCDC reference: 2245808
Additional supporting information: crystallographic information; 3D view; checkCIF report






