Abstract
Cerebral white matter hyperintensities are an important contributor to ageing brain pathology. Progression in white matter hyperintensity volume is associated with cognitive decline and gait impairment. Understanding the factors associated with white matter hyperintensity progression provides insight into pathogenesis and may identify novel treatment targets to improve cognitive health. We postulated that the immune system interaction with cerebral vessels and tissue may be associated with disease progression, and thus evaluated the relationship of blood leucocyte gene expression to progression of cerebral white matter hyperintensities.
A brain MRI was obtained at baseline in 166 patients assessed for a cognitive complaint, and then repeated at regular intervals over a median of 5.9 years (interquartile range 3.5–8.2 years). White matter hyperintensity volumes were measured by semi-automated segmentation and percentage change in white matter hyperintensity per year calculated. A venous blood sample obtained at baseline was used to measure whole-genome expression by RNA sequencing. The relationship between change in white matter hyperintensity volumes over time and baseline leucocyte gene expression was analysed.
The mean age was 77.8 (SD 7.5) years and 60.2% of participants were female. The median white matter hyperintensity volume was 13.4 ml (SD 17.4 ml). The mean change in white matter hyperintensity volume was 12% per year. Patients were divided in quartiles by percentage change in white matter hyperintensity volume, which was: −3.5% per year in quartile 1, 7.4% per year in quartile 2, 11.7% in quartile 3 and 33.6% per year in quartile 4. There were 148 genes associated with changing white matter hyperintensity volumes over time (P < 0.05 r > |0.2|). Genes and pathways identified have roles in endothelial dysfunction, extracellular matrix remodelling, altered remyelination, inflammation and response to ischaemia. ADAM8, CFD, EPHB4, FPR2, Wnt-B-catenin, focal adhesion kinase and SIGLEC1 were among the identified genes.
The progression of white matter hyperintensity volumes over time is associated with genes involved in endothelial dysfunction, extracellular matrix remodelling, altered remyelination, inflammation and response to ischaemia. Further studies are needed to evaluate the role of peripheral inflammation in relation to rate of white matter hyperintensity progression and the contribution to cognitive decline.
Keywords: white matter hyperintensity, leucocyte, gene expression, mRNA, cognitive decline
Jickling et al. identify differences in leucocyte gene expression associated with the rate of white matter hyperintensity progression over an average of 5.9 years. The genes and pathways identified are involved in endothelial dysfunction, extracellular matrix remodelling, remyelination, inflammation and response to ischaemia.
Introduction
Cerebral white matter hyperintensities (WMH) are believed to be a manifestation of cerebral small vessel disease. They increase with advancing age and are associated with cognitive decline, dementia and stroke.1–3 With vascular dementia as an important cause of cognitive decline, improved understanding of the factors that promote progression of WMH could lead to novel strategies to reduce age-related brain injury and improve cognitive health. In this study, we evaluated the relationship of leucocyte gene expression in blood at baseline to progression of cerebral WMH volumes over time.
The pathogenesis of WMH remains unknown. However, chronic cerebral hypoperfusion,4–6 inflammation, endothelial dysfunction, altered blood–brain barrier permeability6–9 and degeneration of myelin sheaths with axonal loss may all contribute.10 Progression of WMH is associated with age, hypertension and initial severity of WMH.11,12 No specific therapies exist to slow the progression WMH. While antiplatelet therapies are commonly prescribed for persons with WMH, in the absence of clinical stroke the practice is not supported by either American Heart Association or European Stroke Organisation guidelines given a lack of clear benefit and concern over increased risk of intracerebral haemorrhage.13,14 Blood pressure control has slowed the development of WMH in some studies.15–18 In the SPRINT-MIND trial targeting a systolic blood pressure ≤120 mmHg in patients with hypertension slowed accumulation of WMH (0.16 ml/year reduction) and lowered risk of cognitive decline.16,19 Control of other risk factors such as diabetes and hyperlipidaemia have not been clearly demonstrated to prevent or slow WMH. Improved understanding of the factors that promote progression of WMH over time is needed to develop therapies to slow its development and improve cognitive function.
Small vessel endothelial injury elicits a response from the immune system. This response can be identified by changes in gene expression in circulating leucocytes. We previously found changes in RNA expression in cells of whole blood in patients with lacunar small vessel stroke as well as patients with WMH.20–23 Furthermore, inflammation and associated oxidative stress may contribute to WMH through effects on the blood–brain barrier and myelin. In this study, we sought to evaluate the relationship of leucocyte gene expression to changes in WMH volumes over time. We propose that patients who are going to have the greatest progression in cerebral WMH volumes on MRI may have specific differences in leucocyte gene expression, reflecting early or ongoing small vessel injury. These features may reveal novel targets to treat and slow the development of cerebral WMH and thus improve cognitive health.
Materials and methods
Patients
Patients were recruited prospectively from the University of California, Davis. Brain MRIs were acquired at baseline and at regular intervals over the course of patient follow-up. Patients were followed for a mean of 5.9 years (range 2–12.1 years) from initial enrolment into the study. A standardized protocol was used to record patient characteristics at baseline, study follow-up appointments, demographics, cognitive testing, blood draws and brain MRIs.
MRI protocol
Participants underwent serial MRI scans that were conducted and analysed using a standardized automated segmentation protocol that is independent of demographic, clinical and blood sample information. This WHM segmentation method has high inter-rater reliability (ICC > 0.94, P-values < 0.001), and agreement between test and retest sessions (ICC > 0.98, P < 0.001) and very consistent across different scanners (ICC > 0.98, P < 0.001).24 The algorithm used to assess WMH is based on a Bayesian approach to segmentation of high-resolution 3D T1 and FLAIR sequences. In brief, non-brain structures are excluded from the 3D T1 images befire measurement using an automated atlas-based method. The FLAIR image is transformed to a 3D T1 image using the FLIRT method from the FSL toolbox, with error estimation based on correlation ratio. Inhomogeneity correction of the 3D T1 is performed using interleaved bias estimation and B-spline deformation with a template.25 This multiple iteration method updates a B-spline intensity deformation between an unbiased template image and the subject image, with an estimation of a bias field based on the current templatetoimage alignment. The bias field is modelled using a spatially smooth thin-plate spline interpolation based on ratios of local image patch intensity means between the deformed template and subject images. FLAIR inhomogeneity corrections after coregistration of the FLAIR to the 3D T1 image is based on a previously published local histogram normalization method.26 Prior to WMH calculation, each 3D T1 image is non-linearly aligned to a common template atlas and each of the accompanying images are transformed onto the same atlas using the same transformation parameters. Estimation of WMH is then performed using a modified Bayesian probability structure based on a previously published method of histogram fitting.27 Prior probability maps for WMH were created from >700 individuals with semi-automatic detection of WMH followed by manual editing. Likelihood estimates of the native image are calculated through histogram segmentation and thresholding. All segmentation is initially performed in standard space resulting in probability likelihood values of WMH at each voxel in the white matter. These probabilities are then thresholded at 3.5 standard deviations above the mean to create a binary WMH mask. Segmentation is based on a modified Bayesian approach that combines image likelihood estimates, spatial priors and tissue class constraints. The segmented WMH masks are then transformed back to the native space for tissue volume calculation.
White matter hyperintensity progression rate
The rate of change in WMH volume per year was determined. For each patient, WMH volume was measured and compared to subsequent MRI. Every patient had an MRI at time of enrolment, and this was then repeated 1–5 times over the course of study. The mean number of MRIs obtained per patient was 3 (range 2–6) over a mean of 5.9 years (range 2–12.1 years). A linear model of WMH volume change per year was determined for each patient. In cases where the blood draw was not acquired at the time of the MRI, the rate of WMH change over time was used to estimate the WMH at the time of blood draw. Because larger volumes of WMH tend to have larger increases in WMH volume over time, the rate of progression was assessed as a proportion of baseline WMH (percentage change in WMH).
Leucocyte gene expression
Blood samples were collected into PAXgene tubes at baseline at or near the time of initial MRI of the brain. Samples were stored at −80°C until the time of RNA isolation. All samples were isolated at the same time to reduce variance related to batch effect using a QIAgen PAXgene kit for total RNA. RNA quality was assessed by Agilent Bioanalyzer and quantity by Nanodrop and Qubit. Samples required a RIN >7.0 and a A260/280 > 1.8 to proceed. RNA expression was measured by 3′ focused RNA sequencing. mRNA libraries were prepared using the Lexogen QuantSeq FWD 3′ mRNA-Seq Library Prep Kit. Multiplexed samples were sequenced as 100 bp single end reads to a depth of 11.0 ± 0.4 million reads with an Illumina HiSeq 4000 Sequencer.
Statistics and data analysis
Patient characteristics between quartiles were compared by chi-square, Mann–Whitney or ANOVA as appropriate. Distribution was assessed by Kolmogorov–Smirnoff. Analysis was performed using Partek Flow, Partek Genomics Suite (St. Louis, MO, USA) and Stata V16.1 (College Station, TX, USA). RNA-sequenced demultiplexed fastq files were processed using the Lexogen QuantSeq pipeline in Partek Flow. In brief, raw reads were trimmed for adapters and quality thresholds, then aligned to the human genome (hg38) using STAR 2.5.3a. Reads at the gene level were quantified and annotated with GENCODE 25. A low variance filter of 10% was applied. The relationship of gene expression to percentage change in WMH was analysed by analysis of covariance, adjusted for age and sex. Patients were divided into quartiles of percentage change in WMH as the data were not normally distributed. Genes associated with percentage change in WMH were identified on the basis of r > |0.2| and corrected P < 0.05. Functional analysis of genes associated with WMH progression was performed using Ingenuity Pathway Analysis (Qiagen, LLC.) and literature review.
Data availability
The data that support the findings of this study are available from the authors upon reasonable request.
Results
The demographics of the 166 patients studied are shown in Table 1. The mean age was 77.8 years (SD 7.5), and 60.2% were female. Vascular risk factors were common, with 75% having hypertension, 77.2% hyperlipidaemia, 33.7% diabetes and 8.3% smokers. Patients were followed over a mean of 5.9 years (interquartile range 2.2–9.5 years).
Table 1.
Quartile 1 (n = 42) | Quartile 2 (n = 41) | Quartile 3 (n = 41) | Quartile 4 (n = 42) | Total (n = 166) | P-value | |
---|---|---|---|---|---|---|
Age years (SD) | 76.9 (7.3) | 79.8 (5.9) | 76.7 (6.6) | 77.7 (9.7) | 77.8 (7.5) | 0.38 |
Female, n (%) | 25 (59.5%) | 28 (68.3%) | 25 (61.0%) | 22 (52.4%) | 100 (60.2%) | 0.53 |
Percentage change in WMH volume per year mean (SD) | −4.2% (4.9%) | 7.4% (1.3%) | 11.7% (1.3%) | 33.6% (28.2%) | 12.1% (19.8%) | 0.001 |
WMH baseline ml (SD) | 4.7 (5.2) | 19.8 (19.6) | 10.5 (8.6) | 18.6 (24.2) | 13.4 (17.4) | 0.0001 |
Systolic BP mmHg (SD) | 134.6 (13.2) | 143.6 (16.9) | 144.2 (20.2) | 144.1 (21.1) | 141.6 (18.4) | 0.043 |
Diastolic BP mmHg (SD) | 68.6 (10.0) | 76.4 (11.2) | 74.1 (12.2) | 74.9 (12.2) | 73.5 (11.7) | 0.013 |
Hypertension n (%) | 10 (45.5%) | 19 (73.1%) | 20 (76.9%) | 26 (89.7%) | 75 (72.8%) | 0.005 |
Diabetes n (%) | 14(33.3%) | 14 (35.8%) | 15 (38.5%) | 11 (27.5%) | 54 (33.7%) | 0.85 |
Hyperlipidaemia n (%) | 28 (70.0%) | 26 (63.4%) | 34 (81.0%) | 28 (66.6%) | 116 (77.2%) | 0.63 |
Caucasian n (%) | 25 (59.5%) | 21 (51.2%) | 27 (65.9%) | 20 (47.6%) | 93 (56.0%) | 0.33 |
African-American n (%) | 4 (9.5%) | 10 (24.4%) | 6 (14.6%) | 6 (14.3%) | 26 (15.7%) | 0.30 |
Latino/Hispanic n (%) | 5 (11.9%) | 10 (24.4%) | 8 (19.5%) | 12 (28.6%) | 35 (21.1%) | 0.28 |
Asian n (%) | 8 (19.0%) | 0 (0%) | 0 (0%) | 2 (4.8%) | 10 (6.0%) | 0.20 |
The median baseline WMH volume was 13.4 cm3 (SD 17.4 cm3). Between baseline and final MRI (mean 5.9 years) there was variability in progression of WMH volume. The mean percentage change in WMH volume was 12% per year. The cohort was divided into quartiles of percentage change in WMH volume (Table 1). In quartile 1 the mean percentage change in WMH volume was −3.5% per year, in quartile 2 it was 7.4% per year, in quartile 3 it was 11.7% per year and in quartile 4 it was 33.6% per year (Fig. 1). Patients in quartile 1 with little change or regression in WMH had less hypertension, and less baseline WMH. Patients in quartiles 2–4 where WMH increased over time were of similar age, sex and vascular risk factor status. Quartile 1 and 4 subjects were termed ‘slow progressors’ and ‘fast progressors’, respectively.
Genes associated with percentage change in WMH volume over time were identified by analysis of covariance comparing fast progressors to slow progressors adjusted for age and sex. There were 148 genes associated with change of WMH volumes over time (P < 0.05, r > |0.2|) (Supplementary Table 1). The differences in gene expression between patients with fast and slow change in WMH are shown in a hierarchical cluster plot and principal components analysis in Fig. 2. Among the genes identified were several that may have potential as therapeutic targets including ADAM metallopeptidase domain 8 (ADAM8), complement factor D (CFD), ephrin type-B receptor 4 (EPHB4), formyl peptide receptor 2 (FPR2), Wnt-B-catenin, focal adhesion kinase (FAK) and sialoadhesin (SIGLEC1) (Fig. 3).
Functional analysis of genes associated with WMH progression was performed to identify pathways over-represented greater than expected by chance. Identified pathways are summarized in Table 2. Among the top canonical pathways identified were endothelial dysfunction, extracellular matrix remodelling, altered remyelination, inflammation and response to ischaemia/hypoxia.
Table 2.
Genes | P-value | |
---|---|---|
Canonical pathways | ||
Rho signalling | ACTA1, ANLN, CDH7, GNB2, MYL12B, PIP4K2C, PTK2, RHOB | 0.0010 |
Integrin signalling | ACTA1, CAPN5, MYL12B, PTK2, RHOB, TSPAN2 | 0.0020 |
Ephrin B signalling | EPHB4, GNB2, PTK2, SDCBP | 0.0100 |
CXCR4 signalling | GNB2, MYL12B, PTK2, RHOB | 0.0195 |
Interferon signalling | IFNGR2, MX1 | 0.0204 |
FAK signalling | ACTA1, CAPN5, PTK2 | 0.0263 |
Thrombin signalling | GNB2, MYL12B, PTK2, RHOB | 0.0398 |
Functional pathways | ||
Degranulation of phagocytes | ADAM8, CD9, CFD, CYSTM1, DUSP1, DYNC1LI1, FPR2, GOLGA7, JUNB, PGM2, QPCT, S100P, SDCBP | 0.0002 |
Chemotaxis of macrophages | FPR2, MTUS1, PTK2, RHOB | 0.0072 |
Cell movement of phagocytes | ADAM8, CD9, CFD, DUSP1, FPR2, MTUS1, PROK2, PTK2, QPCT, RHOB, SCN9A, WLS | 0.0101 |
Infiltration by neutrophils | ADAM8, CFD, DUSP1, FPR2, WLS | 0.0177 |
Acute inflammation of tissue | FPR2, TRADD | 0.0239 |
Complement activation | CFD | 0.0303 |
Discussion
With an ageing population, strategies to improve cognitive health are of great importance. Cerebral WMH contribute to cognitive decline, thus understanding the factors associated with WMH progression may identify novel strategies to slow their development and improve cognition. We identified differences in leucocyte gene expression associated with the progression of cerebral WMH over the course of a mean of 5.9 years. Genes and pathways identified have roles in endothelial dysfunction, extracellular matrix remodelling, altered remyelination, inflammation and response to ischaemia. Differences in these genes and associated pathways provide insight to the progression of WMH and may have potential as novel targets to slow accumulation of WMH.
WMH on brain MRI are believed to be a manifestation of cerebral small vessel disease. The diseased cerebral small vessels and injured white matter interact with circulating leucocytes. Indeed, the involvement of immune cells is observed in pathological studies of WMH.5,28,29 Leucocyte interactions with diseased cerebral small vessels and WMH alter gene expression. Among the genes we identified were several that may have potential as therapeutic targets to slow the progression of WMH including extracellular matrix (ADAM8, EPHB4, Wnt-B-catenin) myelination [CFD, methionine sulphoxide reductase B1 (MSRB1)] and inflammation (SIGLEC1, FPR2 and FAK).
Extracellular matrix/cerebrovascular matrisome
Perturbation of the cerebrovascular extracellular matrix (ECM) and matrisome plays a role in pathogenesis of WMH.30–34 Genetic variants in the ECM associated with WMH include the glycoprotein NID2,35,36 basement membrane collagen COL4A1/2,37 VCAN (versican) involved in cell adhesion and ECM assembly38 and fibulin 3 (EFEMP1), a glycoprotein in the basement membrane.39 Consistent with these results, we identified several genes (ADAM8, EPHB4, WNT) that have effects on the ECM that may contribute to WMH progression. ADAM8 is a disintegrin matrix metalloproteinase that disrupts the extracellular matrix by cleaving chondroitin sulphate proteoglycan and promoting barrier disruption.40 ADAM8 also cleaves several leucocyte adhesion molecules (L-selectin, P-selectin glycoprotein ligand-1 and vascular cell adhesion molecule 1) to alter the ECM and dynamics of leucocyte adhesion to cerebral endothelium in a manner that may promote WMH.41 EPHB4 is an endothelial cell receptor for ephrin-B2, which acts through Rho-Src signalling to affect integrins and vascular barrier integrity.42–46 Both EPHB4 and Rho signalling were associated with progression of WMH. Wnt/β-catenin pathway is essential for blood–brain barrier maintenance and plays an important role in endothelial response to hypertension.47,48 Therapies to prevent disruption of the matrisome may have potential to slow the progression of WMH. Targeting ADAM8 with batimatstat (BB94), EPHB8 with tesevatinib or use of Wnt with inhibitors49 may warrant further study as treatments to slow the progression of WMH.
Myelination
An impairment in myelination and oligodendrocyte function may also contribute to the progression of WMH. Indeed, early dysfunction of the endothelium can impair oligodendrocyte function and promote white matter disease.50 GPR126 is gene variant associated with WMH and lacunar stroke that may contribute to small vessel disease by inhibiting myelin repair.32 Two genes we identified that may contribute to demyelination are CFD and MSRB1. CFD is a trypsin peptidase involved in the alternative complement pathway, which has roles in demyelination and synaptic pruning of the ageing brain.51,52 MSRB1 has antioxidant effects, reducing methionine sulphoxides produced from reactive oxygen species. An impairment in MSRB1 could enhance oxidative and inflammatory injury of oligodendrocytes and promote WMH.53,54 Preventing myelin injury by targeting complement activity with therapies such as eculizumab and ACH-4471, or enhancing antioxidant defence by activating MSRB1 with agents such as fusaricidin55 may be strategies worth evaluating to slow progression of WMH.
Inflammation
Inflammation has also been implicated in the pathogenesis of small vessel disease and may contribute to the progression of WMH.32,56 Inflammatory markers are present in regions of WMH in both animal models57 and human neuropathological studies.58,59 Inflammatory markers in plasma are increased in SVD, and related to WMH progression.41,60 HLA variants are associated with mean diffusivity and fractional anisotropy.33 Neuroinflammation measured by PET imaging is increased in patients with WMH, as is an increase in blood–brain barrier permeability and microglial activation.57,61 We found SIGLEC1, FPR2 and FAK to be associated with progression of WMH. SIGLEC1 (CD169) is a leucocyte adhesion molecule that binds sialic acids to promote inflammation. In multiple sclerosis, SIGLEC1 contributes to inflammatory injury and demyelination.62 FPR2 is a leucocyte receptor with both pro-inflammatory and anti-inflammatory activities.63,64 A shift towards pro-inflammatory effects may occur that may promote WMH progression. FAK is a focal adhesion kinase that enhances leucocyte attachment to endothelium and promotes inflammation.65,66 Targeting inflammation may be a strategy to slow progression of WMH. Indeed, minocycline has been found to reduce white matter damage in an animal model.57 Whether WMH progression can be slowed by targeting SIGLEC1,67 FPR2 (e.g. barbadin)68 or FAK (e.g. defactinib, PF-573 228) will be of interest to study.
We evaluated the progression of WMH over time due to a stronger relationship to cognitive decline. It is important to note that, while related, WMH progression is distinct from total WMH volume. While larger WMH volume is associated with progression of WMH over time, there are patients with small volume WMH who experience fast progression, and likewise patients with a large volume of WMH with slow progression. Genes associated with WMH volume progression in the present study differed from genes differentially expressed in blood of patients with large volume WMH compared to low volume WMH.23 Ephrin signalling was common to both studies. Thus, the immune response that may promote WMH progression has differences from the immune response related to different WMH volumes. This is supported by previous reports noting the clinical factors associated with WMH volume differ from those associated with progression of WMH. While age and hypertension are among the most consistent factors associated with WMH volume, for WMH progression the baseline WMH volume is the most consistent associated factor. We observed a similar relationship in our cohort, with baseline WMH progression being associated with baseline WMH progression more so than age or hypertension. Furthermore, the identified genes were more strongly associated with WMH progression than baseline WMH volume.
Strengths of this study include follow-up of patients over a course of 5.9 years, baseline blood draw in RNA-stabilizing PAXgene tubes and standardized imaging and rating of WMH by MRI-segmentation. However, there are limitations. This was a single cohort study and, thus, further evaluation in larger cohorts is required to confirm identified findings. Whole blood was analysed, which limits our ability to specifically assess individual leucocyte subsets and their contribution to WMH. The progression of WMH over time was assumed to be linear. While this is consistent with previous studies of WMH progression, there may be periods when WMH progresses faster than others that were not captured in the current study. Similarly, we were not able to assess the effect of genetic variation or other environmental factors. While the relationship of WMH progression to cognitive decline has been reported in previous studies, we did not specifically examine the relationship of WMH progression and gene expression changes to cognitive decline in this study. Further evaluation regarding the relationship of identified genes and pathways to cognitive decline will be of interest.
In conclusion, we identified differences in leucocyte gene expression associated with a percentage change in WMH over a course of 5.9 years. Aspects of leucocyte activation and endothelial dysfunction associated with WMH progression were identified. With further study, the impact of these targets on the blood–brain barrier, extracellular matrix, endothelium and myelination may help better understand how WMH develop in humans and potentially guide novel therapeutic strategies.
Supplementary Material
Abbreviations
- FAK =
focal adhesion kinase
- WMH =
white matter hyperintensity(ies)
Contributor Information
Glen C Jickling, Department of Neurology, University of California Davis School of Medicine, Sacramento, CA, USA; Department of Medicine, Division of Neurology, University of Alberta, Edmonton, Alberta, Canada.
Bradley P Ander, Department of Neurology, University of California Davis School of Medicine, Sacramento, CA, USA.
Xinhua Zhan, Department of Neurology, University of California Davis School of Medicine, Sacramento, CA, USA.
Boryana Stamova, Department of Neurology, University of California Davis School of Medicine, Sacramento, CA, USA.
Heather Hull, Department of Neurology, University of California Davis School of Medicine, Sacramento, CA, USA.
Charles DeCarli, Department of Neurology, University of California Davis School of Medicine, Sacramento, CA, USA.
Frank R Sharp, Department of Neurology, University of California Davis School of Medicine, Sacramento, CA, USA.
Funding
This research was supported by the grants AG042292 (F.R.S., C.D., B.S.S., B.P.A., G.C.J.) AG010129 (C.D.) from the National Institute on Aging. G.C.J. receives research funding from CIHR, Heart and Stroke Foundation of Canada, University Hospital Foundation and Canada Research Chair.
Competing interests
The authors report no competing interests.
Supplementary material
Supplementary material is available at Brain online.
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Data Availability Statement
The data that support the findings of this study are available from the authors upon reasonable request.