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. Author manuscript; available in PMC: 2023 Dec 1.
Published in final edited form as: Mod Pathol. 2023 Feb 22;36(6):100144. doi: 10.1016/j.modpat.2023.100144

NR4A3 Expression is Consistently Absent in Acinic Cell Carcinomas of the Breast: A Potential Nosologic Shift

Edward T Richardson 1,2,3, Pier Selenica 4, Fresia Pareja 4, Paola Dal Cin 1,3, Etta Hanlon 4, Britta Weigelt 4, Jorge S Reis-Filho 4, Jason L Hornick 1,2,3, Vickie Y Jo 1,2,3, Stuart J Schnitt 1,2,3,*
PMCID: PMC10328721  NIHMSID: NIHMS1899769  PMID: 36828363

Abstract

Acinic cell carcinoma (AciCC) is a tumor that is recognized in both the breast and salivary glands. Recently, the recurrent genomic rearrangement, t(4;9)(q13;q31) was identified in salivary AciCC that results in constitutive upregulation of the nuclear transcription factor NR4A3, which can be detected by immunohistochemistry (IHC). Here we sought to evaluate NR4A3 expression in breast AciCC using IHC. Strong and diffuse nuclear staining was considered a positive result. Sixteen AciCC were studied including 8 pure AciCC and 8 AciCC admixed with other types (invasive carcinoma of no special type in 5 cases and metaplastic carcinoma in 3 cases). All 16 AciCC were negative for NR4A3 expression. Four cases with available material were evaluated for rearrangements of the NR4A3 gene by fluorescence in situ hybridization (FISH) and no rearrangements were observed. Whole-genome sequencing of one AciCC revealed a TP53 splice-site mutation, high levels of genomic instability, and genomic features of homologous recombination DNA repair defects; structural variant analysis of this case did not reveal the presence of a t(4;9) rearrangement. We conclude that 1) breast AciCC consistently lack NR4A3 rearrangement or overexpression, unlike the vast majority of salivary AciCC, and 2) consistent with prior results, breast AciCC is associated with genomic alterations more similar to those seen in triple-negative breast carcinomas (TNBC) than salivary gland AciCC. These results suggest that unlike other salivary gland-like tumors that occur in the breast, the molecular underpinnings of salivary gland and breast AciCC are different and that salivary gland and breast AciCC likely represent distinct entities.

Keywords: Breast, acinic cell carcinoma, NR4A3, molecular characterization, homologous recombination DNA repair

Introduction

Acinic cell carcinoma (AciCC) of the breast is a rare subtype of breast carcinoma first described in 1996 and characterized by morphologic similarities to AciCC of the salivary gland1. It is categorized as a special type of estrogen receptor (ER)/progesterone receptor (PR)/HER2-negative (triple-negative) breast carcinoma in the current World Health Organization (WHO) classification of tumors of the breast2.

Breast AciCC is characterized by an infiltrative growth pattern with glandular and solid components, eosinophilic luminal secretions in the glands, prominent eosinophilic cytoplasmic fine or coarse (“Paneth cell-like”) granules, and in most cases low-to-intermediate grade nuclear atypia3. AciCCs of the breast may show a microglandular pattern, making distinction from microglandular adenosis (MGA) challenging in some cases4. Other AciCCs are found in association with high-grade TNBC, and in cases with mixed histologic patterns of AciCC and other types of breast carcinoma, shared genomic alterations have been identified in each component, suggesting clonal relatedness and the possibility of high-grade transformation5. In its pure form AciCC generally has a favorable prognosis but a more aggressive clinical course has been reported in those associated with high-grade TNBC6.

We have previously demonstrated a similar spectrum of mutations in breast AciCC and other TNBCs, including frequent mutations in TP53 and PIK3CA, as well as additional mutations in known breast carcinoma-associated genes such as BRCA1, ERBB3, ERBB4, CTNNB1, INPP4B, and FGFR2, and complex patterns of chromosomal copy number gains and losses5,7,8.

In contrast, in AciCC of the salivary gland, mutations in TP53 and other oncogenes are rare9, and the most common recurrent genetic alteration is the t(4;9)(q13;q31) translocation involving NR4A3 and the secretory Ca-binding phosphoprotein gene cluster, leading to overexpression of NR4A3 in tumor cells10. Other rearrangements have been described in salivary gland AciCC, including HTN3::MSANTD3 and PRB3::ZNF217 fusion genes11,12. Salivary gland AciCC also characteristically expresses DOG-1, a calcium-activated chloride channel and marker of serous acinar differentiation13.

Nuclear expression of NR4A3 detected by immunohistochemistry (IHC) has been shown to be a highly sensitive and specific marker of AciCC in the salivary gland14,15. Nuclear NR4A3 protein expression is detected in AciCCs harboring the t(4;9) translocation involving NR4A3, and NR4A3 overexpression is found in tumors associated with the HTN3::MSANTD3 fusion, indicating that NR4A3 overexpression is a critical pathogenetic mechanism for salivary AciCC14. Overexpression of a related nuclear receptor, NR4A2, has been observed in rare salivary AciCC lacking NR4A3 overexpression, suggesting that this pathway and transcription factor family is important for development of this type of salivary gland carcinoma16. Given prior findings that raise questions about the relationship between breast and salivary gland AciCC, we sought to define the expression of NR4A3 protein and the presence of NR4A3 rearrangements in breast AciCC to further assess whether there these are truly related to salivary AciCC. We also sought to perform a novel characterization of breast AciCC by means of deep whole-genome sequencing.

Materials and Methods

Study Materials and Case Selection

AciCCs of the breast diagnosed by subspecialty breast pathologists between 2015 and 2021 using the WHO criteria2 were identified from the surgical pathology consultation archives of the authors’ institutions. Eighteen specimens from sixteen unique patients with AciCC of the breast were identified, including four cases which have been published previously5, and are further characterized in this study. Clinical characteristics for the patients were obtained from the original institutional and consultation pathology reports. Hematoxylin and eosin (H&E)-stained slides and immunostained slides of all cases were reviewed by two of the authors (E.T.R. and S.J.S.) to confirm the diagnosis of AciCC and document any additional pathologic findings prior to including the cases in this study. Freshly prepared whole tissue sections were obtained from the original archival formalin-fixed, paraffin-embedded (FFPE) tissue blocks wherever possible.

Immunohistochemical Analysis

Unstained slides were subjected to standard immunohistochemical techniques in the Immunohistochemistry Laboratory of Brigham and Women’s Hospital, as described in a previous study15. Briefly, 4-micron FFPE whole-tissue sections were subjected to antigen retrieval in pH 6.1 citrate buffer using a pressure cooker (Target Retrieval Solution, Dako, Carpinteria, CA, USA). The NR4A3 (NOR-1) mouse monoclonal primary antibody (clone H-7 at 1:50 dilution; Santa Cruz Biotechnology, Dallas, TX, USA) and DOG-1 mouse monoclonal primary antibody (clone K9 at 1:30 dilution; Leica Biosystems, Buffalo Grove, IL, USA) were applied followed by detection with the Novolink Polymer Detection System (Leica) for NR4A3 and EnVision+ (Dako) for DOG-1, according to the manufacturer’s instructions.

For AciCCs with mixed histologic patterns, areas of AciCC morphology were evaluated separately. Nuclear NR4A3 expression and membranous or cytoplasmic DOG-1 expression were considered positive. External positive control slides were tested and evaluated alongside the cases and showed appropriate immunoreactivity (the NR4A3 external positive control was an established case of AciCC of the salivary gland by morphologic and standard diagnostic IHC characterization, and the DOG-1 external positive control was a known gastrointestinal stromal tumor).

Fluorescence In Situ Hybridization Detection and Analysis

Interphase FISH was performed according to standard methods, as described in a previous study15. Briefly, FISH was attempted on at least one specimen from each unique patient with available material. A total of nine specimens were analyzed by FISH for NR4A3. Customized dual-color break-apart probes were developed for the 5’ and 3’ regions of NR4A3 at 9q22, with signal separation of >3 signal diameters considered as split signals and >4% split signals considered a positive result for rearrangement (this cut-off was determined by internal laboratory validation studies for the NR4A3 probe). At least 50 nuclei with hybridization signals were needed for an evaluable result. A known case of extracellular myxoid chondrosarcoma, which is characterized by NR4A3 rearrangement involving various fusion partners17,18, was used as a positive external control for FISH and demonstrated NR4A3 rearrangement in 92% of tumor cell nuclei.

Whole-genome sequencing analysis

DNA extracted from a breast AciCC and matched normal FFPE tissue (case 14, which had sufficient material available for sequencing of paired tumor and normal tissue) was subjected to whole-genome sequencing at Memorial Sloan Kettering Cancer Center’s (MSK’s) Integrated Genomics Operation using validated protocols19. Whole-genome sequencing data were processed using validated bioinformatics methods19. In brief, sequence reads were aligned to the reference human genome GRCh37 using the Burrows-Wheeler Aligner (BWA v0.7.15)20. Somatic single nucleotide variants (SNVs) were detected with MuTect (v1.0)21. Insertion and deletions (indels) were detected using Strelka (v2.0.15)22, VarScan2 (v2.3.7)23, Platypus (v0.8.1)24, Lancet (v1.0.0)25, and Scalpel (v0.5.3)26. SNVs with <10% mutant allele fraction were removed to limit FFPE-derived artefactual mutations. Structural variants were detected using Manta in paired tumor-normal mode27. Copy number alterations and loss of heterozygosity (LOH) were determined using FACETS28. Based on the copy-number alterations, large-scale state transitions were defined as previously described29,30. Somatic mutations in tumor suppressor genes that were deleterious/loss-of-function or targeting a mutational hotspot in oncogenes were considered pathogenic. Mutations targeting hotspot loci were annotated according to Chang et al31. Cancer cell fractions (CCFs) for each mutation were computed with ABSOLUTE32. Mutational signatures (COSMIC v3.1) were computed with Signal33. MSISensor34 was run to compute the level of microsatellite instability. HRDetect35 was run using mutations, copy number and structural variant calls derived from whole-genome sequencing.

Results

Clinical characteristics

A total of 18 specimens of AciCC of the breast were analyzed from 16 unique patients. For three patients, paired core needle biopsy and surgical resection specimens were evaluated. All patients were female. The median patient age at AciCC diagnosis was 46 years (range, 29–74 years) and the median tumor size was 2.2 cm (range, 0.6–10.5 cm; tumor size information available for 14 of 16 patients). Of the 16 patients included in this study, 11 had axillary lymph node sampling; one patient with a mixed AciCC and invasive carcinoma of no special type (NST) had metastatic carcinoma involving 10 of 17 lymph nodes (case 6), one patient with a pure AciCC had isolated tumor cells (ITC) in one lymph node (regarded as node-negative according to the American Joint Committee on Cancer36; case 10), and the remaining patients with lymph node sampling were node-negative (Table 1).

Table 1.

Clinicopathologic characteristics of patients with acinic cell carcinoma of the breast in this cohort.

Case Designation Age at Diagnosis Tumor size (cm) Axillary lymph node status Specimen Type Histomorphology IHC Results (for the AciCC component in cases with mixed histology)
(+), positive; (−), negative
FISH Results
1 48 9.5 Negative (0 of 1) Mastectomy Pure AciCC (+) S100, lysozyme, A1ACT
(−) CK5/6, p63, ER, NR4A3, DOG-1
Testing attempted; no results obtained
2 45 10.5 Negative (0 of 2) Excision; completion mastectomy Pure AciCC (+) S100, ER (20–30%, weak-to-moderate), lysozyme, A1ACT, A1AT
(−) PR, HER2, NR4A3, DOG-1
Negative for NR4A3 rearrangement; polysomy detected in 58% of nuclei
3 32 2.5 Negative (0 of 2) Mastectomy AciCC admixed with chondroid metaplastic carcinoma (+) S100, lysozyme, A1ACT
(−) ER, PR, HER2, NR4A3, DOG-1
Testing attempted; no results obtained
4 46 Unknown Unknown CNB AciCC admixed with microinvasive carcinoma NST (+) S100, EMA, PR (80%, moderate)
(−) ER, HER2, p63, NR4A3, DOG-1
Negative for NR4A3 rearrangement; polysomy detected in 56% of nuclei
5 58 0.6 Negative (0 of 2) Mastectomy Pure AciCC (+) GATA3, CK7, S100, lysozyme, A1AT
(−) ER, PR, HER2, synaptophysin, chromogranin, CK20, NR4A3, DOG-1
Negative for NR4A3 rearrangement
6* 36 5.0 Positive (10 of 17) Unknown AciCC admixed with invasive carcinoma NST (+) lysozyme
(−) ER, PR, HER2, NR4A3, DOG-1
Not tested
7* 55 1.9 Negative (0 of 8) Unknown AciCC admixed with invasive carcinoma NST (+) lysozyme
(−) ER, PR, HER2, NR4A3, DOG-1
Not tested
8* 34 3.6 Negative (0 of 3) Unknown AciCC admixed with invasive carcinoma NST (+) lysozyme
(−) ER, PR, HER2, NR4A3, DOG-1
Not tested
9* 70 Unknown Unknown Unknown AciCC admixed with chondroid metaplastic carcinoma (+) lysozyme
(−) ER, PR, HER2, NR4A3, DOG-1
Not tested
10 70 1.8 Negative (ITC in 1 of 4) Excision Pure AciCC (+) S100, lysozyme, SOX10
(−) ER, PR, HER2, NR4A3, DOG-1
Not tested
11 74 1.2 Unknown CNB Pure AciCC (+) PR (1%, weak), S100, lysozyme, SOX10 (−) ER, NR4A3, DOG-1 Testing attempted; no results obtained
12 29 1.5 Negative (0 of 3) CNB; excision AciCC admixed with invasive carcinoma NST; multiple residual foci of pure AciCC invasion after neoadjuvant chemotherapy (+) GATA3, GCDFP-15, S100, lysozyme, A1AT, PR (30%, moderate)
(−) ER, HER2, NR4A3, DOG-1
Testing attempted; no results obtained
13 43 Unknown Unknown CNB Pure AciCC (+) S100, EMA, lysozyme, A1AT
(−) ER, PR, HER2, NR4A3, DOG-1
Testing attempted; no results obtained
14 46 1.1 Negative (0 of 1) Mastectomy Dominant mass pure AciCC; separate focus of invasive carcinoma NST (0.55 cm) (+) PR (30%, weak), GATA3, SOX10, S100, lysozyme, A1AT, DOG-1 (focal)
(−) ER, HER2, BCL10, NR4A3
Negative for NR4A3 rearrangement; polysomy detected in 48% of nuclei
15 38 2.9 Negative (0 of 1) Mastectomy Pure AciCC (+) S100, EMA, GCDFP-15, SOX10, AR, lysozyme, A1AT, MUC4, DOG-1 (focal)
(−) ER, PR, HER2, synaptophysin, mammaglobin, pan-TRK, NR4A3
Not tested
16 52 6.3 Unknown Mastectomy AciCC admixed with spindle cell metaplastic carcinoma (+) pan-keratin MNF-116, AE1/AE3, Cam5.2, S100, lysozyme, A1AT, GCDFP-15
(−) ER, PR, HER2, CK5, 34βE12, p63, NR4A3, DOG-1
Not tested

Notes:

*

Cases 6, 7, 8, and 9 in this current study have been published in a previous study5 (corresponding to case designations 7, 9, 14, and 16 in that study), and are further characterized herein.

For cases 11 and 13, only a core needle biopsy (CNB) specimen was available for analysis, each of which showed pure AciCC morphology.

Abbreviations: AciCC, acinic cell carcinoma; A1ACT, alpha-1-antichymotrypsin; A1AT, alpha-1-antitrypsin; AR, androgen receptor; CK, cytokeratin; ER, estrogen receptor; EMA, epithelial membrane antigen; GCDFP-15, gross cystic disease fluid protein 15; PR, progesterone receptor.

Pathologic characteristics

All breast AciCCs displayed characteristic histopathologic features, including haphazardly distributed small glands and solid nests, eosinophilic luminal secretions in the glands, and cells with finely to coarsely granular eosinophilic cytoplasm (Figure 1). Mixed histologic patterns were present in 8 AciCCs (Table 1). Of these, 5 AciCCs were admixed with invasive carcinoma of NST and 3 AciCCs were admixed with metaplastic carcinoma (1 spindle cell, 2 chondroid). The tumors showed immunophenotypic features characteristic of breast AciCC, including expression of S100 protein and proteins such as lysozyme, alpha-1-antitrypsin, or alpha-1-antichymotrypsin, and lack of ER, PR, and HER2 expression (Table 1; some cases were evaluated with a subset of these markers). All AciCC of the breast were negative for NR4A3 expression (Figure 1). Expression of DOG-1, a marker of serous acinar differentiation that has been used to identify AciCC of the salivary gland13, was detected focally only in 2 of 16 breast AciCCs tested; the remaining 14 breast AciCCs lacked any expression of this marker (Figure 1 and Table 1).

Figure 1.

Figure 1.

Morphology of pure breast AciCC and immunohistochemistry results for NR4A3 and DOG-1. A-D. Pure breast AciCCs, showing a haphazard proliferation of small glands with eosinophilic luminal secretions and eosinophilic cytoplasmic granules, with variation in the prominence and proportion of the small glandular proliferation demonstrating the eosinophilic granules. E. Representative IHC for NR4A3 in breast AciCC, showing no nuclear staining. F. Representative IHC for DOG-1 in breast AciCC, showing no staining.

Analysis of NR4A3 rearrangements by FISH

To assess the presence of NR4A3 rearrangements, nine AciCCs were subjected to FISH analysis. Areas of AciCC were marked on H&E-stained sections for correlation with FISH slides to ensure evaluation was limited to the neoplastic cells and areas with acinic cell morphology. Analysis of the four breast AciCCs yielding optimal hybridization and interpretable results revealed no rearrangements (Table 1). The remaining five cases were not evaluable due to technical issues despite the optimal results in the external controls, and FISH was attempted twice for each case, with no detectable signals.

Whole-genome sequencing of a breast AciCC

To define the mutational signatures and their causative DNA repair defects and potential carcinogenic insults, we sought to subject breast AciCCs to whole-genome sequencing. Of the cases with matched normal tissue availability, only one had sufficient material and DNA of sufficient quantity and quality for sequencing of paired tumor and normal tissue (AciCC case 14). Whole-genome sequencing was subsequently performed on the matched tumor and normal tissue samples from AciCC case 14, which arose in a patient known to carry germline pathogenic variants affecting BRCA1 and MLH1 (Figure 2). Structural variant analysis did not reveal the presence of the HTN3::MSANTD3 fusion or the t(4,9)(q13;q31) rearrangement resulting in NR4A3 overexpression that are seen in salivary gland AciCC. A total of 4,549 somatic mutations were detected in AciCC case 14, including a clonal TP53 splice-site mutation coupled with copy number loss of the wild-type allele. Allelic-specific copy number analysis revealed LOH of the wild-type allele of BRCA1 and retention of the wild-type allele of MLH1, supportive of causative role for BRCA1 in the development of this carcinoma. Consistent with this notion, this breast AciCC displayed a low tumor mutation burden and a low MSISensor score (3.38), ruling out microsatellite instability. This case, however, displayed high levels of chromosomal instability, high fraction of the genome altered (67.6%), as well as genomic features of homologous recombination (HR) deficiency29,30, including a high large-scale transition score (LST) of 22, a dominant HR deficiency-related signature (Signature 3, 27% and Signature 8, 31%), and a high HRDetect score (0.99), consistent with a role of BRCA1 loss of function in the oncogenesis of this breast AciCC.

Figure 2.

Figure 2.

Genomic analysis of whole-genome sequencing of pure breast AciCC. A. Exonic mutations detected in whole-genome sequencing with pathogenic mutations (including germline BRCA1 and MLH1 variants) annotated in red. B. Copy number profile computed from FACETS showing genome-wide segmentation of log-ratios. Genomic information such as purity, ploidy, fraction of genome altered, HRDetect score, LST score, and MSIsensor score are shown to the right of the plot. C. A circos plot displaying (from outside to inside) inter-variant distance and substitution type of SNVs, deletions, insertions, copy number, and structural variants. D. Mutational signatures computed using Signal showing the proportion of mutations ascribed to each signature.

Discussion

This study demonstrates that AciCCs of the breast consistently lack detectable immunohistochemical expression of NR4A3 and that NR4A3 rearrangements are absent. These findings stand in sharp contrast to the frequent NR4A3 overexpression driven by translocation and enhancer hijacking seen in AciCC of the salivary gland10,14, results that have potentially important biologic and nosologic implications.

We have previously reported on the genetic differences between AciCC of the breast and of the salivary gland. We observed through targeted, whole-exome and RNA-sequencing that breast AciCCs harbor recurrent TP53 hotspot mutations (>80%), PIK3CA mutations (10%), and mutations in DNA repair genes, including pathogenic BRCA1 and MLH1 alterations, however no oncogenic in-frame fusion transcripts were identified5,7,8,37. In contrast, no TP53 and PIK3CA mutations were identified in salivary gland AciCC37. In both studies, the pattern and frequency of alterations in breast AciCC were similar to those seen in TNBC NST, and no specific pathognomonic genomic alterations were identified. The whole-genome sequencing analysis performed on breast AciCC case 14 in this current study further supports and expands on our earlier findings. This case harbored not only a TP53 splice site mutation and high levels of genomic instability, but also displayed genomic features of HR DNA repair deficiency, including high large-scale state transitions and HR deficiency-related mutational signatures, akin to a subset of common-type TNBCs. This patient was known to have germline BRCA1 and MLH1 pathogenic alterations; our whole-genome sequencing findings support the notion that this patient developed a BRCA1-related breast AciCC rather than a Lynch Syndrome cancer, given the presence of genomic features of HR deficiency, including a high HRDetect score, and LOH of the BRCA1 wild-type allele, while retaining the wild-type allele of MLH1.

Another study has previously reported a breast AciCC occurring in a patient with a germline BRCA1 mutation; this case demonstrated BRCA1 LOH and a somatic TP53 mutation as well38. The alterations seen in our AciCC case 14 lend further support to the notion that breast AciCC is characterized by TP53 alterations and associated genomic instability, similar to other TNBCs, and distinct from salivary gland AciCC. It should be noted however, that AciCC case 14 harbored both BRCA1 and MLH1 pathogenic germline mutations. While BRCA1 and MLH1 alterations have been reported in AciCCs previously, further studies are warranted to assess the prevalence and causative role of germline BRCA1 alterations in patients with breast AciCC. These results, in combination with the lack of NR4A3 rearrangements by FISH and absence of both NR4A3 and DOG-1 protein expression by IHC provide strong evidence that breast AciCC and salivary gland AciCC are distinct entities with different underlying molecular pathogenesis.

Breast AciCC should be contrasted with other salivary gland-like breast carcinomas which have the same translocations as their counterparts in the salivary gland and are associated with a relatively favorable prognosis, including adenoid cystic carcinoma (MYB::NFIB, MYBL1 rearrangements)3941, secretory carcinoma (ETV6::NTRK3)42, and mucoepidermoid carcinoma (CRTC1::MAML2)43. Notably, NR4A3 IHC is more sensitive than FISH (which is limited given the variable breakpoints on 9q31) as it detects overexpression in salivary AciCC regardless of underlying genetic alteration14.

Despite some overlapping morphologic features with salivary AciCC, breast AciCC also shares morphologic and molecular genetic features with MGA7,44,45, has similar driver mutations to TNBC NST and metaplastic carcinomas, and lacks NR4A3 and DOG-1 expression, whereas salivary gland AciCC is a translocation-associated carcinoma with a simple genome and consistently demonstrates NR4A3 overexpression, which has been associated with its tumorigenesis10. Our data and prior work7 have demonstrated relatively frequent co-occurrence of breast AciCC morphology with other histologic types of breast carcinoma, with similar molecular alterations in both compartments, suggesting these entities are clonally related to each other.

While this cohort of breast AciCC is the largest studied to date, it is still limited by its small sample size, and our negative results may be related to a sampling bias. Further studies are needed to ascertain whether a subset of breast AciCCs are associated with NR4A3 alterations or overexpression, as well as to define the molecular pathogenesis of this rare special type of breast carcinoma and any molecular correlates for high-grade transformation and metastasis.

Despite these limitations, our data demonstrate that breast AciCCs lack the cardinal molecular features of salivary AciCC, including NR4A3 rearrangements and protein overexpression, suggesting a distinct molecular pathogenesis. These data also contribute to growing evidence that AciCC of the breast exists on a morphologic spectrum with MGA and can co-occur with other types of TNBC; MGA and AciCC may represent a “low-grade triple-negative neoplasia” pathway with the potential for progression to high-grade TNBC7,44,45, with accompanying risk for metastasis and mortality.

In conclusion, available data suggest that a nosologic shift may be in order for tumors that fulfill the current WHO criteria for breast AciCC2. It is becoming evident from the growing body of literature that AciCC in the breast is distinct from and unrelated to AciCC in the salivary gland and is a unique tumor type amongst the breast tumors with recognized analogous salivary gland counterparts. This is not entirely surprising given that tumors designated as AciCC of the breast have several morphologic differences from salivary AciCC. How to best classify these breast carcinomas is uncertain; however, a change in diagnostic terminology should be considered to better reflect their histopathologic and molecular features and lack of relationship to salivary AciCC. Rosen has suggested that “so-called mammary acinic cell carcinoma is in fact invasive carcinoma with acinic cell differentiation arising in microglandular adenosis”46. Given the morphologic, immunophenotypic and genetic overlap between breast AciCC and MGA, the concept of including tumors currently categorized as AciCC within the spectrum of MGA/atypical MGA/carcinoma arising in MGA merits consideration.

Acknowledgements

The authors wish to thank Dr. Yunn-Yi Chen (UCSF, San Francisco, CA), Dr. Anita Bane (Cambridge Memorial Hospital, Cambridge, Ontario, Canada), Dr. Kim Ginevan (Mercy Hospital, Portland, ME), Dr. Kamyar Khazaeian (Southcoast Pathology Services, Fall River, MA), Dr. Robert Bradley (Methodist University Hospital, Memphis, TN), Dr. Bruce Kulander (Cellnetix, Seattle, WA), and Dr. Anne Flynn (Roper Hospital, Charleston, SC) for generously contributing their cases for this study. We appreciate the efforts of Mark Buchanan, BWH Histology Laboratory, Mei Zheng, BWH Immunohistochemistry Laboratory, and Melissa Gorman, BWH Cytogenetics Laboratory, for their technical contributions.

Funding

This work was funded by intradepartmental support to the authors. Research reported in this publication was funded in part by the NIH/NCI Cancer Center Core Grant No. P30-CA008748. B.W. is funded in part by Cycle for Survival and Breast Cancer Research Foundation grants, J.S.R.-F. in part by the Breast Cancer Research Foundation, a Susan G. Komen Leadership Grant, and F.P. in part by an NIH K12 CA184746 grant. F.P., B.W. and J.S.R.-F. are funded in part by the NIH/NCI P50 CA247749 01 grant.

Conflicts of Interest

Richardson: Institutional research support from AstraZeneca, outside the scope of this work.

Selenica: None

Pareja: None

Hanlon: None

Dal Cin: None

Weigelt: Ad hoc membership of the scientific advisory board of REPARE Therapeutics, outside the scope of this work.

Reis-Filho: Personal/consultancy fees from Goldman Sachs, Bain Capital, REPARE Therapeutics, Paige.AI and Personalis, membership of the scientific advisory boards of VolitionRx, REPARE Therapeutics, Paige.AI and Personalis, membership of the Board of Directors of Grupo Oncoclinicas, and ad hoc membership of the scientific advisory boards of Roche Tissue Diagnostics, Daiichi Sankyo, Merck, and AstraZeneca, outside the scope of this work.

Hornick: Consultant to Aadi Bioscience and TRACON Pharmaceuticals, outside the scope of this work.

Jo: Spouse is an employee of Merck and Company, outside the scope of this work.

Schnitt: Member of the scientific advisory boards of PathAI, Ibex Medical Analytics, and PreciseDx, outside the scope of this work.

Ethics Approval

This study was approved by the Institutional Review Board of Brigham and Women’s Hospital under waiver of consent (protocol number 2017P000536). This work was performed in accordance with the Declaration of Helsinki.

Data Availability Statement

The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.

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