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. 2023 Jul 5;39(7):btad424. doi: 10.1093/bioinformatics/btad424

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© The Author(s) 2023. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Performance comparison for different oligomeric states. (A and B) AlphaFold-Multimer performance using (A) min DockQ_i and MM-score per complex between homomers and heteromers. The white dot represents the median, while the thick grey bar in the centre represents the interquartile range. The ‘violin shape’ shows a kernel density estimation of the data. (C) Success rates (i.e. the fraction of acceptable models with min DockQ_i > 0.23) for AlphaFold-Multimer predictions. (D) Success rates on the common subset (n = 837) of the benchmark dataset using AlphaFold-Multimer, FoldDock, OmegaFold, and ESMFold. The common subset comprises 592 dimers, 103 trimers, 110 tetramers, 6 pentamers, and 26 hexamers.