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. 2023 Aug 25;9(9):e19486. doi: 10.1016/j.heliyon.2023.e19486

Table 1.

All the primers and plasmids used in this study are listed in table.

Strain Relevant genotype Source
C. freundii ESBL Clinical isolate Hospital
ΔAmpR C. freundii AmpR mutant This study
E. coli DH5α Transformation TransGen
E. coli BL21 Protein expression TransGen
Plasmids
pKD4 Template for FLP recognition target site, Kanr, Ampr [26]
pKD46 Temperature-sensitive, λ Red recombinase plasmid, Kanr, Ampr [26]
pCP20 Temperature-sensitive, FLP recombinase plasmid, Ampr, Cmr [26]
pET28a (+)
Recombinant protein expression in E. coli BL21, Kanr
Novagen
Primer name
Oligonucleotide (5-3)
Application
AmpR- forward-1 AGGCTTAATGATGACGCGTAGCTATATCCCTCTGTAGGCTGGAGCTGCTTC AmpR mutant
AmpR-reversed-2 GTTAATTATCAGGCCCGCCATTGGCGGGCCTTTTCATATGAATATCCTCCTTAG AmpR mutant
AmpR-forward-3 ATGACGCGTAGCTATATCCCTCTTAAC PCR
AmpR-reversed-4 GTGCAGCACCCCGGTCAACCAACGGGA PCR
AmpR-forward-rt1 GTGACGCATTCTGCCATCAGCCAGC RT-qPCR
AmpR-reversed-rt2 TTCCTGGGTCTGTTTAGTGGCAA RT-qPCR
AmpC-forward-7 TGATTTCATGATGAAAAAATCGATATGC PCR
AmpC-reversed-8 CAGTTATTGCAGTTTTTCAAGAATGCGC PCR
AmpC-forward-rt3 GAGCAGGCTATTCCGGGCATGGCCG RT-qPCR
AmpC-reversed-rt4 ATAGCGTCGCCGCCCAACACGCCGT RT-qPCR