The crystal structures of three xylitol derivatives prepared directly from commercially available xylitol by treatment with formalin and acid followed by subsequent derivatization of the primary hydroxyl group of the bis-methylene ketal with mesyl chloride, benzyl bromide or phenyl isocyanate are reported.
Keywords: xylitol; pentose; cis-1,3,5,7-tetraoxadecalin; cis-decalin conformation; crystal structure
Abstract
The structures of three racemic (tetrahydro-[1,3]dioxino[5,4-d][1,3]dioxin-4-yl)methanol derivatives are reported, namely, 4-[(methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine, C8H14O7S, 1, 4-[(benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine, C14H18O5, 2, and 4-[(anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine, C14H17NO6, 3. Mesylate ester 1 at 173 K has triclinic P
symmetry and both benzyl ether 2 at 173 K and phenyl urethane 3 have monoclinic P21/c symmetry. These structures are of interest because of the conformation of the cis-fused tetraoxadecalin ring system. This cis-bicyclo[4.4.0]decane ring system, i.e. cis-decalin, can undergo conformational equilibration. In the two most stable conformers, both six-membered rings adopt a chair conformation. However, there are significant consequences in these two stable conformers, with heteroatom substitution at the 1,3,5,7-ring positions as described. Only one conformation, denoted as ‘concave’ or ‘inside’, is found in these crystal structures. This is consistent with previously reported structures of the 1,1-geminal dihydroxy aldehyde and tosylate analogs.
1. Chemical context
Naturally occurring monosaccharides provide an abundant source of inexpensive, often chiral, starting materials for the syntheses of numerous sophisticated natural products, non-natural physiologically active compounds, and ligands for stereoselective catalysts (Ferrier, 2003 ▸). Over the past decade or so, a sharply increasing emphasis is seen on the use of these sugars and also on chemical transformations among the various diastereomeric and homologous series of monosaccharides. Despite this flurry of activity, monosaccharide derivatives still provide a rich source of challenging structural and conformational issues due to the anomeric and gauche interactions associated with the O atoms.
In this article, we describe the crystal structures of three cis-fused [4.4.0]bicyclo methylene acetals originally derived from the most inexpensive and readily available five-carbon meso polyalcohol, i.e. xylitol. The chemical structures of these compounds are shown in the scheme. The standard chemical numbering for the 1,3,5,7-tetraoxadecalin ring system is shown in Fig. 1 ▸. The atoms in all three crystal structures reported are labeled following this pattern. Compound 1 is a mesylate, with R = mesyl (Zarubinskii & Danilov, 1972 ▸), compound 2 is a benzyl ether, with R = benzyl (Che et al., 2017 ▸), and compound 3 is an N-phenylurethane, with R = –CO–NH–Ph. Since xylitol itself is achiral and we carried out no enantioselective reactions to prepare chiral derivatives, the structures we report are of racemates and hence centrosymmetric, although it is possible to obtain enantiomerically pure compounds from more complicated synthetic routes.
Figure 1.

The structures and atom numbering for compounds 1–3. For 1, R = SO2–CH3, for 2, R = CH2–Ph, and for 3, R = CO–NH–Ph.
2. Structural commentary
The defining characteristic of the cis-1,3,5,7-tetraoxa-[4.4.0]bicyclodecalin ring system is depicted in Figs. 2 ▸ and 3 ▸. Fig. 2 ▸ illustrates the two lowest-energy all-chair conformations of this skeleton. The O atoms in these conformers adopt a tetrahedral geometry and the axial lone pair of electrons on each of these O atoms within the decalin ring are depicted. This feature was noted previously (Lemieux & Howard, 1963 ▸; Burkert, 1980 ▸; Taskinen, 2009 ▸) and described in detail in a mini-review summarizing over two decades of chemical work largely from one laboratory (Fuchs, 2013 ▸). Trivial nomenclature has evolved to describe these two conformations as inside/concave or outside/convex. These descriptions derive from the orientation of the axial lone pairs on the ring O atoms relative to the overall shape of the decalin ring system. For the completely unsubstituted tetraoxydecalin, it is not immediately obvious which of these two conformers is more stable.
Figure 2.
Stable conformations of cis-1,3,5,7-tetraoxa-[4.4.0]bicyclodecalin.
Figure 3.

The half-cylinder molecular shape of cis-1,3,5,7-tetraoxa-[4.4.0]bicyclodecalin.
Compounds 1–3 also incorporate a derivatized hydroxymethyl substituent at position C4 that is trans to both bridgehead H atoms. Consequently, this substituent must be equatorial in the concave/inside conformer and axial in the convex/outside conformer. Conformational analysis suggests that the concave/inside conformer is favored, as seen in all these crystal structures. Fig. 3 ▸ highlights this overall geometry found in all three crystal structures. The overall shape of this molecule resembles a cylinder that has been cut in half. It is noteworthy that this molecular shape has been examined for its potential to chelate cations as a polydentate ligand (Ganguly & Fuchs, 2001 ▸) and also as a cryptand (Abramson et al., 2003 ▸).
Fig. 4 ▸ is an overlay of all three crystal structures obtained by minimizing the positional differences of the four ring O atoms in all three structures. No significant difference in the geometry of the tetraoxabicyclic ring in these three structures is discernible. It is noteworthy that a gauche conformation is found for the O3—C4—C9—O8 torsion angle, with values of 61.8 (2) and 81.6 (1)° in mesylate 1 and benzyl ether 2, respectively. However, a relatively antiperiplanar torsion angle of 175.9 (8)° exists in urethane 3. This is likely the consequence of stabilization by the single intermolecular hydrogen bond observed in the urethane structure (see below).
Figure 4.

Structural overlay of compounds 1–3.
Figs. 5 ▸–7 ▸ ▸ display the all-atom displacement ellipsoid plots of compounds 1–3.
Figure 5.

Displacement ellipsoid plot (50% probability) of compound 1.
Figure 6.

Displacement ellipsoid plot (50% probability) of compound 2.
Figure 7.

Displacement ellipsoid plot (50% probability) of compound 3.
3. Supramolecular features
An intramolecular N—H⋯O hydrogen bond is observed in phenyl urethane derivative 3 between the –NH substituent and the carbonyl O atom of the urethane functional group. This is described as D—H⋯A (N1—H1⋯·O9i), with N1—H1 = 0.863 (16) Å, H1⋯O9i = 1.969 (16) Å, N1⋯O9i = 2.8025 (13) Å and N1—H1⋯O9i = 161.9 (14)° [symmetry code: (i) x, y − 1, z]. This is shown in Fig. 8 ▸.
Figure 8.
Hydrogen bonding in compound 3.
No other hydrogen-bond interactions are possible in any of the structures, although there are short C—H⋯O interactions between the H2B atom on a methylene acetal and an adjacent acetal O5ii atom [symmetry code: (ii) x, −y +
, z +
] in urethane structure 3 that is characteristically seen in all of the structures. This is characterized in Table 1 ▸.
Table 1. Hydrogen-bond geometry (Å, °) for 3 .
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O9i | 0.863 (16) | 1.969 (16) | 2.8025 (13) | 161.9 (14) |
| C2—H2B⋯O5ii | 0.99 | 2.51 | 3.4515 (15) | 159 |
Symmetry codes: (i)
; (ii)
.
No π-stacking interactions of the aromatic rings are observed.
4. Database survey
A search of the Cambridge Structural Database (CSD, Version 5.43, update of November 2021; Groom et al., 2016 ▸) for similar structures returned two relevant entries: 2,4:3,5-di-O-methylene-1-p-toluenesulfonyl xylitol (CSD refcode HALSAO; Rodier et al., 1993 ▸) and dihydroxy-2,4:3,5-dimethylene-l-xylose (SIVHUA; Smith et al., 1991 ▸).
5. Synthesis and crystallization
Compounds 1 and 2 were prepared and crystallized by the following general procedure. To a solution of racemic 2,4:3,5-dimethylene xylitol (Hann et al., 1944 ▸) in pyridine, 1.1 molar equivalents of either mesyl chloride or benzyl bromide were added and stirred at room temperature until the diacetal dissolved (∼4 h). The resulting reaction mixtures were allowed to stand for 18 h at room temperature and then poured onto crushed ice. Solid crystalline material formed upon slow evaporation of the reaction mixture on sitting in a fume hood overnight. Recrystallization from ethanol produced diffraction-quality crystals. 1H and 13C NMR spectra of the crystalline samples indicated no discernible impurities and are provided in the supporting information.
Compound 1, 13C{1H} NMR (298 K, CDCl3, 100.5 MHz): δ 93.07, 92.85, 75.49, 70.13, 69.42, 69.32, 68.30, 37.36.
Compound 2, 13C{1H} NMR (298 K, CDCl3, 100.5 MHz): δ 137.94, 128.44, 127.85, 127.79, 93.21, 93.16, 77.24, 73.67, 70.63, 70.16, 69.52, 68.49.
For urethane derivative 3, a solution of racemic 2,4:3,5-dimethylene xylitol, 1.1 molar equivalents of phenyl isocyanate, and pyridine was heated to reflux for 2 h protected from atmospheric moisture by a drying tube. On cooling, the derivative precipitated from the solution and was collected by filtration. Recrystallization from acetone yielded diffraction-quality crystals. 1H and 13C NMR spectra of the crystalline samples indicated no discernible impurities and are provided in the supporting information.
Compound 3, 13C{1H} NMR (298 K, d 6-DMSO, 100.5 MHz): δ 153.76, 139.49, 129.21, 122.92, 118.64, 92.56, 92.17, 75.57, 69.98, 69.93, 69.12, 63.86.
6. Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms were added automatically using a riding model with U iso(H) = 1.2U eq(C). The H atom on N1 in urethane 3 was located in a difference Fourier map and refined freely.
Table 2. Experimental details.
Experiments were carried out at 173 K with Mo Kα radiation. Absorption was corrected for by multi-scan methods (SADABS; Krause et al., 2015 ▸).
| 1 | 2 | 3 | |
|---|---|---|---|
| Crystal data | |||
| Chemical formula | C8H14O7S | C14H18O5 | C14H17NO6 |
| M r | 254.25 | 266.28 | 295.28 |
| Crystal system, space group | Triclinic, P
|
Monoclinic, P21/c | Monoclinic, P21/c |
| a, b, c (Å) | 4.7401 (4), 7.3325 (6), 15.9604 (14) | 20.5429 (9), 4.4574 (2), 13.9148 (7) | 22.909 (2), 4.8973 (5), 12.2331 (14) |
| α, β, γ (°) | 90.019 (3), 93.610 (3), 106.439 (3) | 90, 96.651 (2), 90 | 90, 104.529 (4), 90 |
| V (Å3) | 530.90 (8) | 1265.57 (10) | 1328.6 (2) |
| Z | 2 | 4 | 4 |
| μ (mm−1) | 0.32 | 0.11 | 0.12 |
| Crystal size (mm) | 0.15 × 0.13 × 0.09 | 0.20 × 0.10 × 0.08 | 0.20 × 0.15 × 0.12 |
| Data collection | |||
| Diffractometer | Bruker D8 Quest | Bruker D8 Quest | Bruker D8 Venture Duo |
| T min, T max | 0.665, 0.748 | 0.712, 0.746 | 0.568, 0.746 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 15993, 4823, 2290 | 32635, 3878, 2759 | 23485, 3040, 2803 |
| R int | 0.084 | 0.062 | 0.069 |
| (sin θ/λ)max (Å−1) | 0.929 | 0.716 | 0.650 |
| Refinement | |||
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.070, 0.147, 1.01 | 0.051, 0.123, 1.04 | 0.044, 0.107, 1.06 |
| No. of reflections | 4823 | 3878 | 3040 |
| No. of parameters | 146 | 172 | 193 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.41, −0.66 | 0.31, −0.21 | 0.34, −0.29 |
Supplementary Material
Crystal structure: contains datablock(s) 1, 2, 3, global. DOI: 10.1107/S2056989023006497/pk2693sup1.cif
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989023006497/pk26931sup2.hkl
Supporting information file. DOI: 10.1107/S2056989023006497/pk26931sup5.cml
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989023006497/pk26932sup3.hkl
Supporting information file. DOI: 10.1107/S2056989023006497/pk26932sup6.cml
Structure factors: contains datablock(s) 3. DOI: 10.1107/S2056989023006497/pk26933sup4.hkl
Supporting information file. DOI: 10.1107/S2056989023006497/pk26933sup7.cml
NMR 1H and 13C-NMR spectra of compounds 1-3. DOI: 10.1107/S2056989023006497/pk2693sup8.pdf
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
4-[(Methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (1) . Crystal data
| C8H14O7S | Z = 2 |
| Mr = 254.25 | F(000) = 268 |
| Triclinic, P1 | Dx = 1.590 Mg m−3 |
| a = 4.7401 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 7.3325 (6) Å | Cell parameters from 1351 reflections |
| c = 15.9604 (14) Å | θ = 8.9–35.3° |
| α = 90.019 (3)° | µ = 0.32 mm−1 |
| β = 93.610 (3)° | T = 173 K |
| γ = 106.439 (3)° | Cube, colorless |
| V = 530.90 (8) Å3 | 0.15 × 0.13 × 0.09 mm |
4-[(Methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (1) . Data collection
| Bruker D8 Quest diffractometer | 2290 reflections with I > 2σ(I) |
| Kappa Diffractometer scans | Rint = 0.084 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 41.3°, θmin = 2.6° |
| Tmin = 0.665, Tmax = 0.748 | h = −8→7 |
| 15993 measured reflections | k = −11→11 |
| 4823 independent reflections | l = −25→21 |
4-[(Methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (1) . Refinement
| Refinement on F2 | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.070 | H-atom parameters constrained |
| wR(F2) = 0.147 | w = 1/[σ2(Fo2) + (0.0418P)2 + 0.2188P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.01 | (Δ/σ)max < 0.001 |
| 4823 reflections | Δρmax = 0.41 e Å−3 |
| 146 parameters | Δρmin = −0.65 e Å−3 |
4-[(Methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (1) . Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
4-[(Methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (1) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.60628 (13) | 0.80009 (9) | 0.58781 (4) | 0.02721 (16) | |
| O1 | 0.6927 (3) | 0.4016 (2) | 0.93342 (9) | 0.0266 (4) | |
| O3 | 0.6751 (3) | 0.6081 (2) | 0.82311 (9) | 0.0260 (4) | |
| O5 | 0.4827 (3) | 0.2098 (2) | 0.76954 (9) | 0.0243 (3) | |
| O7 | 0.4434 (3) | 0.0034 (2) | 0.88198 (10) | 0.0289 (4) | |
| O8 | 0.7865 (3) | 0.7367 (2) | 0.66251 (9) | 0.0261 (4) | |
| O9 | 0.3104 (4) | 0.6800 (3) | 0.58398 (11) | 0.0398 (5) | |
| O10 | 0.6589 (4) | 0.9992 (2) | 0.60079 (10) | 0.0373 (4) | |
| C2 | 0.7642 (6) | 0.5925 (3) | 0.90849 (14) | 0.0309 (5) | |
| H2A | 0.979758 | 0.650217 | 0.917189 | 0.037* | |
| H2B | 0.666347 | 0.663938 | 0.943971 | 0.037* | |
| C4 | 0.8303 (5) | 0.5179 (3) | 0.77023 (13) | 0.0227 (4) | |
| H4 | 1.045638 | 0.585886 | 0.776752 | 0.027* | |
| C4A | 0.7829 (5) | 0.3113 (3) | 0.79322 (13) | 0.0216 (4) | |
| H4A | 0.917530 | 0.256771 | 0.761967 | 0.026* | |
| C6 | 0.4217 (6) | 0.0183 (3) | 0.79414 (14) | 0.0304 (5) | |
| H6A | 0.220286 | −0.052390 | 0.772201 | 0.036* | |
| H6B | 0.562188 | −0.040402 | 0.769413 | 0.036* | |
| C8 | 0.7415 (5) | 0.0902 (3) | 0.91348 (14) | 0.0275 (5) | |
| H8A | 0.871338 | 0.019144 | 0.891627 | 0.033* | |
| H8B | 0.754402 | 0.083849 | 0.975507 | 0.033* | |
| C8A | 0.8461 (5) | 0.2954 (3) | 0.88766 (13) | 0.0228 (4) | |
| H8AA | 1.062871 | 0.346026 | 0.901998 | 0.027* | |
| C9 | 0.7183 (5) | 0.5344 (3) | 0.68109 (13) | 0.0240 (5) | |
| H9A | 0.815314 | 0.469652 | 0.642238 | 0.029* | |
| H9B | 0.502868 | 0.474287 | 0.674387 | 0.029* | |
| C10 | 0.7686 (5) | 0.7580 (3) | 0.49760 (14) | 0.0280 (5) | |
| H10A | 0.666135 | 0.795460 | 0.448192 | 0.042* | |
| H10B | 0.754631 | 0.622437 | 0.493002 | 0.042* | |
| H10C | 0.976420 | 0.832549 | 0.500840 | 0.042* |
4-[(Methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (1) . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0286 (3) | 0.0314 (3) | 0.0257 (3) | 0.0142 (2) | 0.0054 (2) | 0.0082 (2) |
| O1 | 0.0368 (9) | 0.0221 (8) | 0.0199 (8) | 0.0062 (7) | 0.0049 (7) | 0.0028 (6) |
| O3 | 0.0357 (9) | 0.0248 (8) | 0.0203 (8) | 0.0130 (7) | 0.0034 (6) | 0.0021 (6) |
| O5 | 0.0261 (8) | 0.0208 (8) | 0.0242 (8) | 0.0038 (6) | 0.0000 (6) | −0.0001 (6) |
| O7 | 0.0339 (9) | 0.0239 (9) | 0.0257 (8) | 0.0023 (7) | 0.0056 (7) | 0.0034 (6) |
| O8 | 0.0320 (9) | 0.0231 (8) | 0.0226 (8) | 0.0067 (7) | 0.0026 (6) | 0.0073 (6) |
| O9 | 0.0237 (9) | 0.0517 (12) | 0.0463 (11) | 0.0140 (8) | 0.0052 (8) | 0.0153 (9) |
| O10 | 0.0571 (12) | 0.0318 (10) | 0.0316 (10) | 0.0246 (9) | 0.0116 (8) | 0.0086 (7) |
| C2 | 0.0457 (15) | 0.0230 (12) | 0.0222 (11) | 0.0073 (10) | 0.0006 (10) | 0.0011 (9) |
| C4 | 0.0237 (11) | 0.0212 (11) | 0.0228 (11) | 0.0056 (8) | 0.0026 (8) | 0.0038 (8) |
| C4A | 0.0222 (11) | 0.0229 (11) | 0.0214 (11) | 0.0087 (8) | 0.0046 (8) | 0.0035 (8) |
| C6 | 0.0416 (14) | 0.0206 (12) | 0.0262 (12) | 0.0042 (10) | 0.0021 (10) | 0.0012 (9) |
| C8 | 0.0339 (13) | 0.0262 (12) | 0.0236 (11) | 0.0100 (10) | 0.0039 (9) | 0.0068 (9) |
| C8A | 0.0233 (11) | 0.0221 (11) | 0.0223 (11) | 0.0051 (9) | 0.0015 (8) | 0.0047 (8) |
| C9 | 0.0303 (12) | 0.0194 (11) | 0.0218 (11) | 0.0060 (9) | 0.0021 (9) | 0.0042 (8) |
| C10 | 0.0310 (13) | 0.0306 (13) | 0.0240 (12) | 0.0111 (10) | 0.0026 (9) | 0.0043 (9) |
4-[(Methylsulfonyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (1) . Geometric parameters (Å, º)
| S1—O10 | 1.4228 (18) | C4—C4A | 1.516 (3) |
| S1—O9 | 1.4270 (18) | C4—H4 | 1.0000 |
| S1—O8 | 1.5698 (15) | C4A—C8A | 1.529 (3) |
| S1—C10 | 1.742 (2) | C4A—H4A | 1.0000 |
| O1—C2 | 1.408 (3) | C6—H6A | 0.9900 |
| O1—C8A | 1.434 (3) | C6—H6B | 0.9900 |
| O3—C2 | 1.415 (3) | C8—C8A | 1.511 (3) |
| O3—C4 | 1.430 (3) | C8—H8A | 0.9900 |
| O5—C6 | 1.412 (3) | C8—H8B | 0.9900 |
| O5—C4A | 1.433 (3) | C8A—H8AA | 1.0000 |
| O7—C6 | 1.406 (3) | C9—H9A | 0.9900 |
| O7—C8 | 1.434 (3) | C9—H9B | 0.9900 |
| O8—C9 | 1.461 (2) | C10—H10A | 0.9800 |
| C2—H2A | 0.9900 | C10—H10B | 0.9800 |
| C2—H2B | 0.9900 | C10—H10C | 0.9800 |
| C4—C9 | 1.504 (3) | ||
| O10—S1—O9 | 119.11 (11) | O7—C6—H6A | 109.3 |
| O10—S1—O8 | 104.77 (10) | O5—C6—H6A | 109.3 |
| O9—S1—O8 | 108.86 (9) | O7—C6—H6B | 109.3 |
| O10—S1—C10 | 109.80 (11) | O5—C6—H6B | 109.3 |
| O9—S1—C10 | 108.16 (12) | H6A—C6—H6B | 108.0 |
| O8—S1—C10 | 105.28 (10) | O7—C8—C8A | 111.14 (18) |
| C2—O1—C8A | 111.28 (17) | O7—C8—H8A | 109.4 |
| C2—O3—C4 | 110.29 (17) | C8A—C8—H8A | 109.4 |
| C6—O5—C4A | 110.55 (17) | O7—C8—H8B | 109.4 |
| C6—O7—C8 | 109.65 (17) | C8A—C8—H8B | 109.4 |
| C9—O8—S1 | 118.45 (13) | H8A—C8—H8B | 108.0 |
| O1—C2—O3 | 111.64 (18) | O1—C8A—C8 | 107.96 (18) |
| O1—C2—H2A | 109.3 | O1—C8A—C4A | 110.20 (17) |
| O3—C2—H2A | 109.3 | C8—C8A—C4A | 110.23 (18) |
| O1—C2—H2B | 109.3 | O1—C8A—H8AA | 109.5 |
| O3—C2—H2B | 109.3 | C8—C8A—H8AA | 109.5 |
| H2A—C2—H2B | 108.0 | C4A—C8A—H8AA | 109.5 |
| O3—C4—C9 | 107.43 (17) | O8—C9—C4 | 107.50 (17) |
| O3—C4—C4A | 110.85 (17) | O8—C9—H9A | 110.2 |
| C9—C4—C4A | 110.92 (18) | C4—C9—H9A | 110.2 |
| O3—C4—H4 | 109.2 | O8—C9—H9B | 110.2 |
| C9—C4—H4 | 109.2 | C4—C9—H9B | 110.2 |
| C4A—C4—H4 | 109.2 | H9A—C9—H9B | 108.5 |
| O5—C4A—C4 | 108.19 (17) | S1—C10—H10A | 109.5 |
| O5—C4A—C8A | 110.03 (17) | S1—C10—H10B | 109.5 |
| C4—C4A—C8A | 110.15 (18) | H10A—C10—H10B | 109.5 |
| O5—C4A—H4A | 109.5 | S1—C10—H10C | 109.5 |
| C4—C4A—H4A | 109.5 | H10A—C10—H10C | 109.5 |
| C8A—C4A—H4A | 109.5 | H10B—C10—H10C | 109.5 |
| O7—C6—O5 | 111.57 (18) | ||
| O10—S1—O8—C9 | 163.58 (16) | C4A—O5—C6—O7 | 64.7 (2) |
| O9—S1—O8—C9 | 35.15 (18) | C6—O7—C8—C8A | 56.9 (2) |
| C10—S1—O8—C9 | −80.62 (17) | C2—O1—C8A—C8 | −176.03 (18) |
| C8A—O1—C2—O3 | 63.0 (2) | C2—O1—C8A—C4A | −55.6 (2) |
| C4—O3—C2—O1 | −63.2 (2) | O7—C8—C8A—O1 | 70.2 (2) |
| C2—O3—C4—C9 | 178.21 (17) | O7—C8—C8A—C4A | −50.2 (2) |
| C2—O3—C4—C4A | 56.9 (2) | O5—C4A—C8A—O1 | −69.6 (2) |
| C6—O5—C4A—C4 | −176.51 (17) | C4—C4A—C8A—O1 | 49.6 (2) |
| C6—O5—C4A—C8A | −56.1 (2) | O5—C4A—C8A—C8 | 49.5 (2) |
| O3—C4—C4A—O5 | 69.7 (2) | C4—C4A—C8A—C8 | 168.64 (18) |
| C9—C4—C4A—O5 | −49.6 (2) | S1—O8—C9—C4 | −159.17 (14) |
| O3—C4—C4A—C8A | −50.7 (2) | O3—C4—C9—O8 | 61.8 (2) |
| C9—C4—C4A—C8A | −169.91 (18) | C4A—C4—C9—O8 | −176.93 (17) |
| C8—O7—C6—O5 | −64.3 (2) |
4-[(Benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (2) . Crystal data
| C14H18O5 | F(000) = 568 |
| Mr = 266.28 | Dx = 1.398 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 20.5429 (9) Å | Cell parameters from 665 reflections |
| b = 4.4574 (2) Å | θ = 7.0–30.6° |
| c = 13.9148 (7) Å | µ = 0.11 mm−1 |
| β = 96.651 (2)° | T = 173 K |
| V = 1265.57 (10) Å3 | Block, colorless |
| Z = 4 | 0.20 × 0.10 × 0.08 mm |
4-[(Benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (2) . Data collection
| Bruker D8 Quest diffractometer | 2759 reflections with I > 2σ(I) |
| Kappa Diffractometer scans | Rint = 0.062 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 30.6°, θmin = 2.0° |
| Tmin = 0.712, Tmax = 0.746 | h = −29→28 |
| 32635 measured reflections | k = −6→6 |
| 3878 independent reflections | l = −19→19 |
4-[(Benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (2) . Refinement
| Refinement on F2 | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.051 | H-atom parameters constrained |
| wR(F2) = 0.123 | w = 1/[σ2(Fo2) + (0.0472P)2 + 0.495P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max < 0.001 |
| 3878 reflections | Δρmax = 0.31 e Å−3 |
| 172 parameters | Δρmin = −0.21 e Å−3 |
4-[(Benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (2) . Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
4-[(Benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (2) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O3 | 0.14034 (5) | 0.5880 (2) | 0.31935 (7) | 0.0230 (2) | |
| O5 | 0.18458 (5) | 0.5729 (2) | 0.12265 (7) | 0.0205 (2) | |
| O7 | 0.09777 (5) | 0.5175 (2) | 0.00055 (7) | 0.0244 (2) | |
| O8 | 0.27719 (5) | 0.4412 (3) | 0.40210 (7) | 0.0277 (2) | |
| O1 | 0.05578 (5) | 0.4848 (2) | 0.19753 (7) | 0.0223 (2) | |
| C2 | 0.07448 (7) | 0.4955 (4) | 0.29813 (10) | 0.0250 (3) | |
| H2A | 0.068982 | 0.294409 | 0.326277 | 0.030* | |
| H2B | 0.045623 | 0.637039 | 0.328068 | 0.030* | |
| C13 | 0.37677 (9) | 0.4540 (4) | 0.69810 (12) | 0.0369 (4) | |
| H13 | 0.360471 | 0.499754 | 0.757563 | 0.044* | |
| C4 | 0.18415 (7) | 0.3773 (3) | 0.28339 (10) | 0.0202 (3) | |
| H4 | 0.181883 | 0.184159 | 0.319425 | 0.024* | |
| C14 | 0.43189 (9) | 0.2806 (4) | 0.69818 (12) | 0.0362 (4) | |
| H14 | 0.453646 | 0.206011 | 0.757327 | 0.043* | |
| C15 | 0.45538 (10) | 0.2158 (5) | 0.61234 (14) | 0.0488 (5) | |
| H15 | 0.493685 | 0.096685 | 0.611887 | 0.059* | |
| C16 | 0.42333 (9) | 0.3238 (5) | 0.52620 (13) | 0.0405 (4) | |
| H16 | 0.439881 | 0.276927 | 0.467000 | 0.049* | |
| C4A | 0.16574 (7) | 0.3179 (3) | 0.17607 (10) | 0.0191 (3) | |
| H4A | 0.190262 | 0.137749 | 0.157023 | 0.023* | |
| C6 | 0.16623 (7) | 0.5295 (3) | 0.02246 (10) | 0.0247 (3) | |
| H6A | 0.183747 | 0.696081 | −0.013987 | 0.030* | |
| H6B | 0.185645 | 0.340146 | 0.001883 | 0.030* | |
| C8 | 0.07206 (7) | 0.2614 (3) | 0.04578 (10) | 0.0238 (3) | |
| H8A | 0.087998 | 0.076190 | 0.016981 | 0.029* | |
| H8B | 0.023629 | 0.263209 | 0.033288 | 0.029* | |
| C9 | 0.25236 (7) | 0.5044 (3) | 0.30451 (10) | 0.0239 (3) | |
| H9A | 0.281348 | 0.414262 | 0.260268 | 0.029* | |
| H9B | 0.251289 | 0.724063 | 0.293854 | 0.029* | |
| C12 | 0.34453 (8) | 0.5633 (4) | 0.61206 (12) | 0.0355 (4) | |
| H12 | 0.306381 | 0.683312 | 0.612870 | 0.043* | |
| C8A | 0.09237 (7) | 0.2591 (3) | 0.15380 (10) | 0.0204 (3) | |
| H8AA | 0.081985 | 0.058431 | 0.180316 | 0.024* | |
| C10 | 0.33439 (8) | 0.6145 (4) | 0.43094 (12) | 0.0334 (4) | |
| H10A | 0.322121 | 0.827277 | 0.438450 | 0.040* | |
| H10B | 0.364623 | 0.603076 | 0.380580 | 0.040* | |
| C11 | 0.36794 (7) | 0.4977 (3) | 0.52499 (11) | 0.0263 (3) |
4-[(Benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (2) . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O3 | 0.0214 (5) | 0.0255 (5) | 0.0220 (5) | 0.0013 (4) | 0.0020 (4) | −0.0051 (4) |
| O5 | 0.0249 (5) | 0.0202 (5) | 0.0162 (4) | −0.0022 (4) | 0.0016 (4) | 0.0004 (4) |
| O7 | 0.0285 (5) | 0.0231 (5) | 0.0204 (5) | −0.0008 (4) | −0.0027 (4) | 0.0034 (4) |
| O8 | 0.0248 (5) | 0.0345 (6) | 0.0219 (5) | −0.0064 (4) | −0.0057 (4) | 0.0041 (4) |
| O1 | 0.0213 (5) | 0.0238 (5) | 0.0216 (5) | 0.0014 (4) | 0.0010 (4) | 0.0002 (4) |
| C2 | 0.0207 (7) | 0.0325 (8) | 0.0221 (7) | 0.0003 (6) | 0.0038 (5) | 0.0011 (6) |
| C13 | 0.0387 (10) | 0.0449 (10) | 0.0272 (8) | −0.0007 (8) | 0.0036 (7) | −0.0043 (7) |
| C4 | 0.0226 (7) | 0.0190 (6) | 0.0186 (6) | 0.0027 (5) | 0.0005 (5) | 0.0001 (5) |
| C14 | 0.0366 (9) | 0.0401 (10) | 0.0289 (8) | −0.0014 (7) | −0.0090 (7) | 0.0027 (7) |
| C15 | 0.0406 (11) | 0.0617 (13) | 0.0427 (11) | 0.0242 (10) | −0.0014 (8) | −0.0011 (9) |
| C16 | 0.0391 (10) | 0.0533 (11) | 0.0292 (9) | 0.0116 (8) | 0.0045 (7) | −0.0039 (8) |
| C4A | 0.0234 (7) | 0.0148 (6) | 0.0187 (6) | 0.0024 (5) | 0.0007 (5) | 0.0008 (5) |
| C6 | 0.0291 (8) | 0.0281 (7) | 0.0171 (6) | 0.0003 (6) | 0.0032 (5) | 0.0005 (6) |
| C8 | 0.0281 (7) | 0.0188 (6) | 0.0231 (7) | −0.0016 (6) | −0.0037 (6) | −0.0013 (5) |
| C9 | 0.0233 (7) | 0.0283 (7) | 0.0194 (6) | 0.0009 (6) | −0.0005 (5) | 0.0019 (6) |
| C12 | 0.0265 (8) | 0.0430 (10) | 0.0365 (9) | 0.0068 (7) | 0.0020 (7) | −0.0028 (8) |
| C8A | 0.0252 (7) | 0.0149 (6) | 0.0203 (6) | −0.0014 (5) | −0.0010 (5) | 0.0012 (5) |
| C10 | 0.0286 (8) | 0.0382 (9) | 0.0310 (8) | −0.0100 (7) | −0.0071 (6) | 0.0060 (7) |
| C11 | 0.0217 (7) | 0.0294 (8) | 0.0265 (7) | −0.0058 (6) | −0.0031 (6) | −0.0012 (6) |
4-[(Benzyloxy)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (2) . Geometric parameters (Å, º)
| O3—C2 | 1.4125 (17) | C15—C16 | 1.385 (3) |
| O3—C4 | 1.4307 (17) | C15—H15 | 0.9500 |
| O5—C6 | 1.4146 (16) | C16—C11 | 1.375 (2) |
| O5—C4A | 1.4354 (16) | C16—H16 | 0.9500 |
| O7—C6 | 1.4051 (18) | C4A—C8A | 1.526 (2) |
| O7—C8 | 1.4336 (17) | C4A—H4A | 1.0000 |
| O8—C9 | 1.4223 (16) | C6—H6A | 0.9900 |
| O8—C10 | 1.4247 (18) | C6—H6B | 0.9900 |
| O1—C2 | 1.4089 (17) | C8—C8A | 1.5127 (19) |
| O1—C8A | 1.4329 (17) | C8—H8A | 0.9900 |
| C2—H2A | 0.9900 | C8—H8B | 0.9900 |
| C2—H2B | 0.9900 | C9—H9A | 0.9900 |
| C13—C14 | 1.371 (3) | C9—H9B | 0.9900 |
| C13—C12 | 1.388 (2) | C12—C11 | 1.385 (2) |
| C13—H13 | 0.9500 | C12—H12 | 0.9500 |
| C4—C9 | 1.509 (2) | C8A—H8AA | 1.0000 |
| C4—C4A | 1.5206 (19) | C10—C11 | 1.500 (2) |
| C4—H4 | 1.0000 | C10—H10A | 0.9900 |
| C14—C15 | 1.370 (3) | C10—H10B | 0.9900 |
| C14—H14 | 0.9500 | ||
| C2—O3—C4 | 111.19 (11) | O7—C6—H6A | 109.3 |
| C6—O5—C4A | 110.19 (10) | O5—C6—H6A | 109.3 |
| C6—O7—C8 | 110.21 (11) | O7—C6—H6B | 109.3 |
| C9—O8—C10 | 110.75 (11) | O5—C6—H6B | 109.3 |
| C2—O1—C8A | 110.46 (11) | H6A—C6—H6B | 108.0 |
| O1—C2—O3 | 111.22 (11) | O7—C8—C8A | 111.62 (11) |
| O1—C2—H2A | 109.4 | O7—C8—H8A | 109.3 |
| O3—C2—H2A | 109.4 | C8A—C8—H8A | 109.3 |
| O1—C2—H2B | 109.4 | O7—C8—H8B | 109.3 |
| O3—C2—H2B | 109.4 | C8A—C8—H8B | 109.3 |
| H2A—C2—H2B | 108.0 | H8A—C8—H8B | 108.0 |
| C14—C13—C12 | 120.68 (16) | O8—C9—C4 | 109.50 (11) |
| C14—C13—H13 | 119.7 | O8—C9—H9A | 109.8 |
| C12—C13—H13 | 119.7 | C4—C9—H9A | 109.8 |
| O3—C4—C9 | 107.03 (11) | O8—C9—H9B | 109.8 |
| O3—C4—C4A | 111.27 (11) | C4—C9—H9B | 109.8 |
| C9—C4—C4A | 112.12 (12) | H9A—C9—H9B | 108.2 |
| O3—C4—H4 | 108.8 | C11—C12—C13 | 120.07 (16) |
| C9—C4—H4 | 108.8 | C11—C12—H12 | 120.0 |
| C4A—C4—H4 | 108.8 | C13—C12—H12 | 120.0 |
| C15—C14—C13 | 119.51 (16) | O1—C8A—C8 | 108.61 (11) |
| C15—C14—H14 | 120.2 | O1—C8A—C4A | 110.34 (11) |
| C13—C14—H14 | 120.2 | C8—C8A—C4A | 110.66 (12) |
| C14—C15—C16 | 120.08 (17) | O1—C8A—H8AA | 109.1 |
| C14—C15—H15 | 120.0 | C8—C8A—H8AA | 109.1 |
| C16—C15—H15 | 120.0 | C4A—C8A—H8AA | 109.1 |
| C11—C16—C15 | 121.06 (16) | O8—C10—C11 | 109.77 (13) |
| C11—C16—H16 | 119.5 | O8—C10—H10A | 109.7 |
| C15—C16—H16 | 119.5 | C11—C10—H10A | 109.7 |
| O5—C4A—C4 | 108.63 (11) | O8—C10—H10B | 109.7 |
| O5—C4A—C8A | 110.50 (11) | C11—C10—H10B | 109.7 |
| C4—C4A—C8A | 110.90 (11) | H10A—C10—H10B | 108.2 |
| O5—C4A—H4A | 108.9 | C16—C11—C12 | 118.60 (15) |
| C4—C4A—H4A | 108.9 | C16—C11—C10 | 120.14 (15) |
| C8A—C4A—H4A | 108.9 | C12—C11—C10 | 121.26 (15) |
| O7—C6—O5 | 111.39 (11) | ||
| C8A—O1—C2—O3 | 64.95 (15) | C4A—C4—C9—O8 | −156.09 (11) |
| C4—O3—C2—O1 | −63.31 (15) | C14—C13—C12—C11 | 0.0 (3) |
| C2—O3—C4—C9 | 176.82 (11) | C2—O1—C8A—C8 | −178.47 (11) |
| C2—O3—C4—C4A | 54.02 (14) | C2—O1—C8A—C4A | −57.01 (14) |
| C12—C13—C14—C15 | 0.2 (3) | O7—C8—C8A—O1 | 73.36 (15) |
| C13—C14—C15—C16 | −0.3 (3) | O7—C8—C8A—C4A | −47.90 (15) |
| C14—C15—C16—C11 | 0.3 (3) | O5—C4A—C8A—O1 | −71.99 (13) |
| C6—O5—C4A—C4 | −178.11 (11) | C4—C4A—C8A—O1 | 48.53 (14) |
| C6—O5—C4A—C8A | −56.24 (14) | O5—C4A—C8A—C8 | 48.25 (14) |
| O3—C4—C4A—O5 | 74.48 (14) | C4—C4A—C8A—C8 | 168.77 (11) |
| C9—C4—C4A—O5 | −45.35 (15) | C9—O8—C10—C11 | −167.65 (13) |
| O3—C4—C4A—C8A | −47.14 (15) | C15—C16—C11—C12 | −0.1 (3) |
| C9—C4—C4A—C8A | −166.97 (11) | C15—C16—C11—C10 | 179.44 (19) |
| C8—O7—C6—O5 | −64.20 (15) | C13—C12—C11—C16 | −0.1 (3) |
| C4A—O5—C6—O7 | 65.18 (14) | C13—C12—C11—C10 | −179.57 (16) |
| C6—O7—C8—C8A | 55.30 (15) | O8—C10—C11—C16 | 102.95 (19) |
| C10—O8—C9—C4 | −166.65 (13) | O8—C10—C11—C12 | −77.6 (2) |
| O3—C4—C9—O8 | 81.64 (14) |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Crystal data
| C14H17NO6 | F(000) = 624 |
| Mr = 295.28 | Dx = 1.476 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 22.909 (2) Å | Cell parameters from 2795 reflections |
| b = 4.8973 (5) Å | θ = 7.0–41.7° |
| c = 12.2331 (14) Å | µ = 0.12 mm−1 |
| β = 104.529 (4)° | T = 173 K |
| V = 1328.6 (2) Å3 | Block, colorless |
| Z = 4 | 0.20 × 0.15 × 0.12 mm |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Data collection
| Bruker D8 Venture Duo diffractometer | 2803 reflections with I > 2σ(I) |
| Kappa Diffractometer scans | Rint = 0.069 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 27.5°, θmin = 2.8° |
| Tmin = 0.568, Tmax = 0.746 | h = −29→29 |
| 23485 measured reflections | k = −6→6 |
| 3040 independent reflections | l = −15→15 |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Refinement
| Refinement on F2 | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.107 | w = 1/[σ2(Fo2) + (0.0495P)2 + 0.442P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.06 | (Δ/σ)max = 0.001 |
| 3040 reflections | Δρmax = 0.34 e Å−3 |
| 193 parameters | Δρmin = −0.29 e Å−3 |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.60997 (4) | 0.50342 (19) | 0.58605 (7) | 0.0310 (2) | |
| O3 | 0.70830 (4) | 0.62699 (19) | 0.58784 (7) | 0.0302 (2) | |
| O5 | 0.63244 (4) | 0.55251 (17) | 0.35740 (7) | 0.0258 (2) | |
| O7 | 0.53139 (4) | 0.48658 (19) | 0.35638 (8) | 0.0324 (2) | |
| O8 | 0.77058 (3) | 0.32337 (15) | 0.37519 (7) | 0.02338 (19) | |
| O9 | 0.82960 (4) | 0.63477 (16) | 0.31909 (8) | 0.0330 (2) | |
| N1 | 0.82836 (4) | 0.19036 (18) | 0.26368 (8) | 0.0225 (2) | |
| H1 | 0.8209 (7) | 0.027 (3) | 0.2824 (13) | 0.027* | |
| C2 | 0.66883 (6) | 0.5438 (3) | 0.65284 (10) | 0.0347 (3) | |
| H2A | 0.683838 | 0.371609 | 0.692421 | 0.042* | |
| H2B | 0.668196 | 0.684296 | 0.710706 | 0.042* | |
| C4 | 0.71453 (5) | 0.4155 (2) | 0.51082 (9) | 0.0230 (2) | |
| H4 | 0.733167 | 0.251744 | 0.554844 | 0.028* | |
| C4A | 0.65326 (5) | 0.3365 (2) | 0.43578 (9) | 0.0215 (2) | |
| H4A | 0.657592 | 0.166324 | 0.393308 | 0.026* | |
| C6 | 0.57349 (5) | 0.4990 (3) | 0.29052 (10) | 0.0320 (3) | |
| H6A | 0.561531 | 0.644689 | 0.233139 | 0.038* | |
| H6B | 0.573382 | 0.323456 | 0.250366 | 0.038* | |
| C8 | 0.54503 (5) | 0.2626 (3) | 0.43325 (11) | 0.0318 (3) | |
| H8A | 0.540811 | 0.089413 | 0.390230 | 0.038* | |
| H8B | 0.515926 | 0.259346 | 0.480937 | 0.038* | |
| C9 | 0.75822 (5) | 0.5321 (2) | 0.44922 (10) | 0.0242 (2) | |
| H9A | 0.740477 | 0.694399 | 0.404957 | 0.029* | |
| H9B | 0.795986 | 0.587944 | 0.503863 | 0.029* | |
| C8A | 0.60852 (5) | 0.2844 (2) | 0.50798 (10) | 0.0262 (2) | |
| H8AA | 0.619336 | 0.109986 | 0.550758 | 0.031* | |
| C10 | 0.81139 (5) | 0.4021 (2) | 0.31843 (9) | 0.0208 (2) | |
| C11 | 0.87120 (5) | 0.2165 (2) | 0.19801 (9) | 0.0210 (2) | |
| C12 | 0.86405 (5) | 0.4148 (2) | 0.11452 (10) | 0.0265 (2) | |
| H12 | 0.831260 | 0.539301 | 0.102868 | 0.032* | |
| C13 | 0.90499 (6) | 0.4305 (3) | 0.04823 (10) | 0.0310 (3) | |
| H13 | 0.900295 | 0.566736 | −0.008600 | 0.037* | |
| C14 | 0.95263 (6) | 0.2486 (3) | 0.06448 (11) | 0.0333 (3) | |
| H14 | 0.980372 | 0.258761 | 0.018488 | 0.040* | |
| C15 | 0.95972 (6) | 0.0516 (3) | 0.14805 (12) | 0.0323 (3) | |
| H15 | 0.992606 | −0.072340 | 0.159664 | 0.039* | |
| C16 | 0.91903 (5) | 0.0342 (2) | 0.21495 (10) | 0.0256 (2) | |
| H16 | 0.923900 | −0.101674 | 0.271959 | 0.031* |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0299 (4) | 0.0412 (5) | 0.0242 (4) | 0.0067 (4) | 0.0111 (3) | −0.0022 (3) |
| O3 | 0.0292 (4) | 0.0361 (5) | 0.0248 (4) | 0.0022 (3) | 0.0056 (3) | −0.0100 (3) |
| O5 | 0.0216 (4) | 0.0324 (4) | 0.0222 (4) | 0.0004 (3) | 0.0032 (3) | 0.0065 (3) |
| O7 | 0.0209 (4) | 0.0425 (5) | 0.0336 (5) | 0.0030 (3) | 0.0064 (3) | 0.0023 (4) |
| O8 | 0.0225 (4) | 0.0208 (4) | 0.0287 (4) | −0.0030 (3) | 0.0100 (3) | −0.0040 (3) |
| O9 | 0.0438 (5) | 0.0157 (4) | 0.0454 (5) | −0.0033 (3) | 0.0221 (4) | −0.0004 (3) |
| N1 | 0.0248 (4) | 0.0156 (4) | 0.0291 (5) | −0.0020 (3) | 0.0107 (4) | 0.0010 (3) |
| C2 | 0.0344 (7) | 0.0503 (8) | 0.0194 (5) | 0.0081 (6) | 0.0068 (5) | −0.0035 (5) |
| C4 | 0.0227 (5) | 0.0246 (5) | 0.0211 (5) | 0.0042 (4) | 0.0043 (4) | −0.0016 (4) |
| C4A | 0.0220 (5) | 0.0225 (5) | 0.0206 (5) | 0.0023 (4) | 0.0066 (4) | 0.0006 (4) |
| C6 | 0.0220 (6) | 0.0482 (7) | 0.0241 (6) | 0.0007 (5) | 0.0025 (4) | 0.0031 (5) |
| C8 | 0.0256 (6) | 0.0345 (6) | 0.0381 (6) | −0.0027 (5) | 0.0135 (5) | −0.0003 (5) |
| C9 | 0.0217 (5) | 0.0224 (5) | 0.0284 (5) | 0.0003 (4) | 0.0064 (4) | −0.0052 (4) |
| C8A | 0.0280 (6) | 0.0273 (5) | 0.0258 (5) | 0.0031 (4) | 0.0115 (4) | 0.0037 (4) |
| C10 | 0.0196 (5) | 0.0179 (5) | 0.0240 (5) | 0.0004 (4) | 0.0040 (4) | 0.0025 (4) |
| C11 | 0.0220 (5) | 0.0188 (5) | 0.0222 (5) | −0.0040 (4) | 0.0057 (4) | −0.0025 (4) |
| C12 | 0.0291 (6) | 0.0230 (5) | 0.0263 (5) | −0.0026 (4) | 0.0046 (4) | 0.0020 (4) |
| C13 | 0.0417 (7) | 0.0277 (6) | 0.0242 (5) | −0.0089 (5) | 0.0093 (5) | 0.0015 (4) |
| C14 | 0.0406 (7) | 0.0318 (6) | 0.0336 (6) | −0.0095 (5) | 0.0204 (5) | −0.0064 (5) |
| C15 | 0.0316 (6) | 0.0275 (6) | 0.0418 (7) | 0.0002 (5) | 0.0165 (5) | −0.0037 (5) |
| C16 | 0.0279 (6) | 0.0209 (5) | 0.0288 (6) | −0.0005 (4) | 0.0086 (4) | 0.0006 (4) |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Geometric parameters (Å, º)
| O1—C2 | 1.4042 (16) | C4A—H4A | 1.0000 |
| O1—C8A | 1.4309 (14) | C6—H6A | 0.9900 |
| O3—C2 | 1.4059 (16) | C6—H6B | 0.9900 |
| O3—C4 | 1.4313 (13) | C8—C8A | 1.5152 (17) |
| O5—C6 | 1.4168 (14) | C8—H8A | 0.9900 |
| O5—C4A | 1.4272 (13) | C8—H8B | 0.9900 |
| O7—C6 | 1.4046 (15) | C9—H9A | 0.9900 |
| O7—C8 | 1.4275 (16) | C9—H9B | 0.9900 |
| O8—C10 | 1.3530 (13) | C8A—H8AA | 1.0000 |
| O8—C9 | 1.4400 (13) | C11—C16 | 1.3881 (16) |
| O9—C10 | 1.2129 (13) | C11—C12 | 1.3891 (15) |
| N1—C10 | 1.3436 (14) | C12—C13 | 1.3873 (17) |
| N1—C11 | 1.4215 (14) | C12—H12 | 0.9500 |
| N1—H1 | 0.863 (16) | C13—C14 | 1.384 (2) |
| C2—H2A | 0.9900 | C13—H13 | 0.9500 |
| C2—H2B | 0.9900 | C14—C15 | 1.3852 (18) |
| C4—C9 | 1.5079 (15) | C14—H14 | 0.9500 |
| C4—C4A | 1.5219 (15) | C15—C16 | 1.3888 (16) |
| C4—H4 | 1.0000 | C15—H15 | 0.9500 |
| C4A—C8A | 1.5330 (15) | C16—H16 | 0.9500 |
| C2—O1—C8A | 110.61 (9) | C8A—C8—H8B | 109.4 |
| C2—O3—C4 | 110.31 (9) | H8A—C8—H8B | 108.0 |
| C6—O5—C4A | 111.13 (9) | O8—C9—C4 | 107.79 (9) |
| C6—O7—C8 | 110.06 (9) | O8—C9—H9A | 110.1 |
| C10—O8—C9 | 113.00 (8) | C4—C9—H9A | 110.1 |
| C10—N1—C11 | 122.64 (9) | O8—C9—H9B | 110.1 |
| C10—N1—H1 | 118.9 (10) | C4—C9—H9B | 110.1 |
| C11—N1—H1 | 116.4 (10) | H9A—C9—H9B | 108.5 |
| O1—C2—O3 | 111.82 (9) | O1—C8A—C8 | 108.28 (9) |
| O1—C2—H2A | 109.3 | O1—C8A—C4A | 110.67 (9) |
| O3—C2—H2A | 109.3 | C8—C8A—C4A | 110.10 (9) |
| O1—C2—H2B | 109.3 | O1—C8A—H8AA | 109.3 |
| O3—C2—H2B | 109.3 | C8—C8A—H8AA | 109.3 |
| H2A—C2—H2B | 107.9 | C4A—C8A—H8AA | 109.3 |
| O3—C4—C9 | 104.08 (9) | O9—C10—N1 | 125.90 (10) |
| O3—C4—C4A | 110.60 (8) | O9—C10—O8 | 123.03 (10) |
| C9—C4—C4A | 114.97 (9) | N1—C10—O8 | 111.08 (9) |
| O3—C4—H4 | 109.0 | C16—C11—C12 | 120.17 (10) |
| C9—C4—H4 | 109.0 | C16—C11—N1 | 119.26 (10) |
| C4A—C4—H4 | 109.0 | C12—C11—N1 | 120.52 (10) |
| O5—C4A—C4 | 108.61 (9) | C13—C12—C11 | 119.75 (11) |
| O5—C4A—C8A | 110.56 (8) | C13—C12—H12 | 120.1 |
| C4—C4A—C8A | 110.09 (9) | C11—C12—H12 | 120.1 |
| O5—C4A—H4A | 109.2 | C14—C13—C12 | 120.31 (11) |
| C4—C4A—H4A | 109.2 | C14—C13—H13 | 119.8 |
| C8A—C4A—H4A | 109.2 | C12—C13—H13 | 119.8 |
| O7—C6—O5 | 111.66 (9) | C13—C14—C15 | 119.77 (11) |
| O7—C6—H6A | 109.3 | C13—C14—H14 | 120.1 |
| O5—C6—H6A | 109.3 | C15—C14—H14 | 120.1 |
| O7—C6—H6B | 109.3 | C14—C15—C16 | 120.39 (11) |
| O5—C6—H6B | 109.3 | C14—C15—H15 | 119.8 |
| H6A—C6—H6B | 108.0 | C16—C15—H15 | 119.8 |
| O7—C8—C8A | 111.20 (10) | C11—C16—C15 | 119.60 (11) |
| O7—C8—H8A | 109.4 | C11—C16—H16 | 120.2 |
| C8A—C8—H8A | 109.4 | C15—C16—H16 | 120.2 |
| O7—C8—H8B | 109.4 | ||
| C8A—O1—C2—O3 | 64.04 (13) | O7—C8—C8A—C4A | −49.89 (13) |
| C4—O3—C2—O1 | −64.56 (13) | O5—C4A—C8A—O1 | −71.14 (11) |
| C2—O3—C4—C9 | −179.25 (9) | C4—C4A—C8A—O1 | 48.87 (12) |
| C2—O3—C4—C4A | 56.74 (11) | O5—C4A—C8A—C8 | 48.53 (12) |
| C6—O5—C4A—C4 | −175.73 (9) | C4—C4A—C8A—C8 | 168.54 (9) |
| C6—O5—C4A—C8A | −54.84 (11) | C11—N1—C10—O9 | 0.04 (18) |
| O3—C4—C4A—O5 | 71.73 (11) | C11—N1—C10—O8 | −179.59 (9) |
| C9—C4—C4A—O5 | −45.78 (12) | C9—O8—C10—O9 | −8.87 (15) |
| O3—C4—C4A—C8A | −49.46 (12) | C9—O8—C10—N1 | 170.76 (9) |
| C9—C4—C4A—C8A | −166.96 (9) | C10—N1—C11—C16 | 130.24 (11) |
| C8—O7—C6—O5 | −63.89 (13) | C10—N1—C11—C12 | −52.41 (15) |
| C4A—O5—C6—O7 | 63.36 (13) | C16—C11—C12—C13 | −0.13 (16) |
| C6—O7—C8—C8A | 57.21 (13) | N1—C11—C12—C13 | −177.46 (10) |
| C10—O8—C9—C4 | −177.55 (8) | C11—C12—C13—C14 | 0.38 (17) |
| O3—C4—C9—O8 | 175.86 (8) | C12—C13—C14—C15 | −0.58 (19) |
| C4A—C4—C9—O8 | −63.01 (12) | C13—C14—C15—C16 | 0.53 (19) |
| C2—O1—C8A—C8 | −176.28 (10) | C12—C11—C16—C15 | 0.09 (17) |
| C2—O1—C8A—C4A | −55.53 (12) | N1—C11—C16—C15 | 177.45 (10) |
| O7—C8—C8A—O1 | 71.22 (12) | C14—C15—C16—C11 | −0.29 (18) |
4-[(Anilinocarbonyl)methyl]-2,4,4a,6,8,8a-hexahydro-[1,3]dioxino[5,4-d][1,3]dioxine (3) . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O9i | 0.863 (16) | 1.969 (16) | 2.8025 (13) | 161.9 (14) |
| C2—H2B···O5ii | 0.99 | 2.51 | 3.4515 (15) | 159 |
Symmetry codes: (i) x, y−1, z; (ii) x, −y+3/2, z+1/2.
Funding Statement
The Salomon Research Fund administered by Brown University is thanked for supporting this research. The authors acknowledge support for the purchase of the X-ray diffraction equipment via grant No. 2117549 from the US National Science Foundation (NSF).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) 1, 2, 3, global. DOI: 10.1107/S2056989023006497/pk2693sup1.cif
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989023006497/pk26931sup2.hkl
Supporting information file. DOI: 10.1107/S2056989023006497/pk26931sup5.cml
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989023006497/pk26932sup3.hkl
Supporting information file. DOI: 10.1107/S2056989023006497/pk26932sup6.cml
Structure factors: contains datablock(s) 3. DOI: 10.1107/S2056989023006497/pk26933sup4.hkl
Supporting information file. DOI: 10.1107/S2056989023006497/pk26933sup7.cml
NMR 1H and 13C-NMR spectra of compounds 1-3. DOI: 10.1107/S2056989023006497/pk2693sup8.pdf
Additional supporting information: crystallographic information; 3D view; checkCIF report


