Biological samples |
|
Sinhala |
Field Collection from Śrī Laṅkā |
See Figures 2 and 3 for population names |
Śrī Laṅkā Tamils (STS) |
Field Collection from Śrī Laṅkā |
See Figures 2 and 3 for population names |
Śrī Laṅkā Tamils (UK) |
1000 genomes (http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/) |
See Figures 2 and 3 for population names |
World population data |
Pathak et al.42
|
See Figures 2 and 3 for population names |
|
Chemicals, peptides, and recombinant proteins |
|
Agarose |
MERCK |
Cat# A9539 |
Tris EDTA Buffer, Molecular Biology Grade |
Fisher Scientific |
Cat# AAJ75893AP |
|
Critical commercial assays |
|
DNA extraction Kit |
Qiagen |
Cat# 51104 |
MinElute PCR Purification Kit |
Qiagen |
Cat# 28006 |
Illumina-Infinium Global Screening Array |
1.0 (GSA-24v1-0) |
Cat# 20031669 |
|
Deposited data |
|
The Genotype data of Sinhala |
This study |
https://doi.org/10.6084/m9.figshare.23975601 |
The Genotype data of Śrī Laṅkā Tamil |
This study |
https://doi.org/10.6084/m9.figshare.23975601 |
|
Software and algorithms |
|
PLINK v1.9 |
Chang et al.44
|
https://www.cog-genomics.org/plink/1.9/ |
EIGENSOFT v6.1.4 |
Patterson et al.45
|
https://github.com/DReichLab/EIG |
ADMIXTURE |
Alexander et al.46
|
https://dalexander.github.io/admixture/ |
ADMIXTOOL |
Patterson et al.47
|
https://github.com/DReichLab/AdmixTools |
BEAGLE 5.4 |
Browning et al.48
|
http://www.gnu.org/licenses/ |
fineStructure |
Lawson et al.49
|
https://people.maths.bris.ac.uk/∼madjl/finestructure/fs-2.1.3.tar.gz |
MEGA-X |
Kumar et al.50
|
https://www.megasoftware.net/show_eua |
ChromoPainter |
Lawson et al.49
|
https://people.maths.bris.ac.uk/∼madjl/finestructure/fs-2.1.3.tar.gz |
ALDER |
Loh et al.51
|
http://cb.csail.mit.edu/cb/alder/alder_v1.03.tar.gz |
runs of homozygosity (RoH) |
Chang et al.44
|
https://www.cog-genomics.org/plink/1.9/ |
merged IBD |
Browning & Browning52
|
http://www.gnu.org/licenses/ |
Refined IBD |
Browning & Browning52
|
http://www.gnu.org/licenses |
mt-DNA nomenclature |
Van Oven & Kayser53
|
Phylotree.org |