Table 1.
Data collection and refinement statistics.
Data collection | |
---|---|
Microscope | Titan Krios |
Acceleration Voltage (kV) | 300 |
Detector | K3 |
Software | SerialEM 3.8 |
Magnification | 105,000x |
Pixel size at detector (Å/px) | 0.83 |
Defocus range (μm) | −1.20 to −2.40 |
Total dose (e−/ Å2) | 52 |
Exposure time (sec) | 4.50 |
Number of movie frames | 50 |
Reconstruction | |
Usable micrograph | 5901 |
Box size (pixel) | 180 |
Total extracted segments | 1,696,844 |
Number of segments after 2D | 125,446 |
Number of segments after 3D | 45,674 |
Symmetry imposed | C1 |
Helical rise (Å) | 4.75 |
Helical twist (°) | −1.00 |
Crossover length (Å) | t 855 |
Map sharpening B-factor (Å2) | −143.25 |
Map resolution (Å; FSC=0.143) | 3.88 |
Model composition | |
Non-hydrogen atoms | 4,096 |
Protein residues | 504 |
Number of chains | 4.00 |
Water | 0.00 |
Ligands (Acetylated) | 8.00 |
Model validation | |
Map CC (mask) | 0.74 |
MolProbity score | 2.14 |
Clash score | 25.23 |
R.M.S deviations bonds (Å) | 0.007 |
R.M.S deviations angle (°) | 1.291 |
Rotamer outliers (%) | 0.00 |
Ramachandran plot (favored/allowed/outliers) | (96.30/3.70/0.00) |
Cβ outliers | 0.00 |
CaBLAM outliers (%) | 2.56% |