Abstract
The newly identified bacterium Dysosmobacter welbionis J115T improves host metabolism in high-fat diet (HFD)-fed mice. To investigate mechanisms, we used targeted lipidomics to identify and quantify bioactive lipids produced by the bacterium in the culture medium, the colon, the brown adipose tissue (BAT), and the blood of mice. In vitro, we compared the bioactive lipids produced by D. welbionis J115T versus the probiotic strain Escherichia coli Nissle 1917. D. welbionis J115T administration reduced body weight, fat mass gain, and improved glucose tolerance and insulin resistance in HFD-fed mice. In vitro, 19 bioactive lipids were highly produced by D. welbionis J115T as compared to Escherichia coli Nissle 1917. In the plasma, 13 lipids were significantly changed by the bacteria. C18-3OH was highly present at the level of the bacteria, but decreased by HFD treatment in the plasma and normalized in D. welbionis J115T–treated mice. The metabolic effects were associated with a lower whitening of the BAT. In the BAT, HFD decreased the 15-deoxy-Δ12,14-prostaglandin J2, a peroxisome proliferator–activated receptor (PPAR-γ) agonist increased by 700% in treated mice as compared to HFD-fed mice. Several genes controlled by PPAR-γ were upregulated in the BAT. In the colon, HFD-fed mice had a 60% decrease of resolvin D5, whereas D. welbionis J115T–treated mice exhibited a 660% increase as compared to HFD-fed mice. In a preliminary experiment, we found that D. welbionis J115T improves colitis. In conclusion, D. welbionis J115T influences host metabolism together with several bioactive lipids known as PPAR-γ agonists.
Supplementary key words: Dysosmobacter welbionis J115T, obesity, bioactive lipids, brown adipose tissue, colon, dietary fat, glucose, insulin resistance, inflammation, lipidomics
The obesity epidemic continues to increase globally. In this context, unraveling novel mechanisms and biological systems involved in obesity etiology is highly pertinent. Among the potential targets, the gut microbiota is viewed as an important factor impacting host physiology (1). Numerous observational studies are showing different associations between gut microbiota composition and/or functionality and host diseases (2). However, demonstrating causation for specific taxa remains difficult (3). Over the last decade, potential next generation beneficial bacteria have been identified. Among those, the symbiont Akkermansia muciniphila has been extensively studied in preclinical research and identified as a potential new target to tackle metabolic disorders and related diseases (4). Among the mechanisms, it has been shown that A. muciniphila produces short-chain fatty acids, such as propionate and thereby contributes to host health (5). Besides the well-described effects of short-chain fatty acids on host health, recent evidence suggests that other mechanisms might be involved in the effects of some probiotic bacteria. For instance, it has also been shown that this bacterium produces different types of proteins (e.g., P9 and Amuc_1100) that are acting on immune receptors and partially explaining the beneficial effects (6, 7) (for review (4)). Recently, two independent studies have shown that specific bioactive lipids might also be involved. In fact, the administration of A. muciniphila in both mice and humans increases colonic tissue or blood levels of 1-palmitoyl-glycerol and 2-palmitoyl-glycerol, two endocannabinoid-related lipids that are endogenous activators of peroxisome proliferator–activated receptor alpha (PPAR-α) (8, 9). Another study shows that a phosphatidylethanolamine with two branched chains (a15:0-i15:0 PE) isolated from the membrane of A. muciniphila had immunogenic activity by acting through toll-like receptor TLR2-TLR1 heterodimer (10).
Escherichia coli Nissle 1917 (EcN) is another beneficial bacterium that can be used as treatment for inflammatory bowel diseases (11). Recently, we contributed to the discovery of a novel anti-inflammatory mechanism of EcN (11). By using large-scale lipidomic, we found that a bacterial long-chain fatty acid hydroxylated on the third carbon, C18-3OH, could reduce colitis in mice by activating PPAR-γ into the intestinal epithelial cells (11).
We have recently isolated and described a novel bacterium, named Dysosmobacter welbionis J115T (12). This bacterium is prevalent and abundant in the general healthy population and found to be lower in type 2 diabetic subjects and to correlate negatively with BMI, fasting glucose and glycated hemoglobin (13). In mice, we found that supplementation with D. welbionis J115T reduces diet-induced obesity, glucose intolerance, and brown adipose tissue (BAT) inflammation in association with an increased mitochondria amount and nonshivering thermogenesis (13). Although D. welbionis J115T has been identified as a butyrate producer, we were unable to find a higher butyrate content in feces or in the blood of treated mice. Therefore, as for other bacteria such as A. muciniphila or EcN, we investigated whether D. welbionis J115T could produce specific bioactive lipids in the culture medium. These results were compared with lipids produced by EcN as this known probiotic has been studied for its production of bioactive lipids. We also studied whether the beneficial effects observed were linked with changes in the abundance of different bioactive lipids within the BAT, the colon, and the blood of high-fat diet (HFD)-fed mice treated with D. welbionis J115T.
Material and Methods
Culture and preparation of Dysosmobacter welbionis for mice experiments
D. welbionis J115T was cultured anaerobically in a modified yeast casitone fatty acid medium supplemented with 10 g/l inositol. Cultures were centrifuged at 5000 g during 15 min, and the supernatant was removed. Cells were then resuspended in anaerobic PBS-carbonate buffer supplemented with 15% (vol/vol) trehalose then immediately frozen in anaerobic vials and stored at −80°C. The number of total and cultivable bacteria administered to the mice was calculated by plating the bacterial culture before preparation and the bacterial suspension after preparation for mice administration.
Mice experiment
HFD experiment
Sets of 7-week-old C57BL/6J male mice (Janvier Laboratories, Le Genest-Saint-Isle, France) were housed in pairs in specific opportunistic and pathogen-free conditions and in a controlled environment (room temperature of 22 ± 2°C, 12 h daylight cycle) with free access to sterile food (irradiated) and sterile water. Upon arrival, all mice underwent a 1-week acclimatization period, during which they were fed a control diet (AIN93Mi, Research Diet, New Brunswick, NJ). During the experiments, food and water intake were recorded once a week. Body composition was assessed by using a 7.5 MHz time domain–NMR (LF50 minispec, Bruker, Rheinstetten, Germany).
The purpose of this mice experiment was to confirm the previously described impact of a daily administration of frozen D. welbionis J115T on diet-induced obesity. A set of 30 mice was divided in three groups of 10 mice. The mice were fed a control diet (AIN93Mi; Research diet, New Brunswick, NJ) or a HFD (60% fat and 20% carbohydrates (kcal/100g), D12492, Research diet, New Brunswick, NJ). One group of HFD-fed mice was treated with an oral administration of Dysosmobacter welbionis J115T by oral gavage at the dose 1.0 109 cfu /0.2 ml per day and per mice (HFD + J115), and control groups were treated with an oral gavage of an equivalent volume of PBS-carbonate buffer supplemented with 15% (weight/vol) trehalose (HFD). Treatment continued for 10 weeks. Mice were euthanized after a 6-h fasting period.
All mouse experiments were approved by the board of the Ethical Committee for Animal Care of the Health Sector of the Université Catholique de Louvain (UCLouvain) headed by Prof. J-P Dehoux, under number 2017/UCL/MD/005, and were performed in accordance with the guidelines of the Local Ethics Committee and in accordance with the Belgian Law of 29 May 2013, regarding the protection of laboratory animals (agreement number LA1230314).
Dextran sulfate sodium experiment
Male C57BL/6 mice (8 weeks of age) were obtained from Janvier Labs (Le Genest-Saint-Isle, France), housed in standard filter-top cages, and provided food and drinking water ad libitum. Animals were kept in a controlled environment (room temperature of 22 ± 2°C, 12 h daylight cycle) with free access to sterile food (irradiated) and sterile water. Starting at day 0, mice were treated with an oral administration of Dysosmobacter welbionis J115T by oral gavage at the dose 1.0 109 cfu /0.2 ml per day and per mice (DSS + J115) and control groups were treated with an oral gavage of an equivalent volume of PBS-carbonate buffer supplemented with 15% (weight/vol) trehalose (Vehicle). To induce colitis, 5% DSS was added to the drinking water over a 5-day period starting at day 7, and this solution was replaced with normal drinking water for an additional 2 days (14). Mice (n = 9 per group) were euthanized on day 14 under isoflurane anesthesia.
Oral glucose tolerance test
One week before the end of experiment, the mice were fasted for 6 h before being given an oral gavage glucose load (2 g glucose per kg body weight). Blood glucose was measured 30 min before (time point −30), just prior the oral glucose load (time point 0) and then after 15, 30, 60, 90, and 120 min. Blood glucose was determined with a glucose meter (Accu Check, Roche, Switzerland) on blood samples collected from the tip of the tail vein. Plasma insulin concentration was determined using an ELISA kit (Mercodia, Uppsala, Sweden) according to the manufacturer's instructions.
Tissue sampling
The animals were anesthetized with isoflurane (Forene®, Abbott, Queenborough, Kent, England), and blood was collected from the portal and cava veins. Then mice were immediately euthanized by cervical dislocation. Tissue samples (liver, BAT, subcutaneous adipose tissue (AT), mesenteric AT, jejunum, ileum and proximal colon, muscles, and brain) were dissected, immersed in liquid nitrogen, and stored at −80°C for further analysis. A part of the ATs and intestines was fixed in 4% paraformaldehyde in PBS for histological analysis.
For the DSS experiment, tissues were removed at the time of death and snap frozen in liquid nitrogen for myeloperoxidase (MPO) activity and ELISA. Before freezing, colons were examined for gross macroscopic appearance, and their weight and length were recorded.
Histological analyses
BAT depots were fixed in 4% paraformaldehyde for 24 h at room temperature. Samples were then dehydrated by immersion in ethanol 100% for 24 h and processed for paraffin embedding. Paraffin sections of 5 μm were stained with haematoxylin and eosin. Whole tissue sections were digitalized using a Pannoramic ScanII slide scanner (3DHISTECH) with a 20× Plan-Apochromat objective and visualized with Cytomine web platform. White area in BAT corresponds to the lipid droplets and was quantified from five fields per sample using Fiji software.
Lipid analysis
Total FA profiling
Bacterial pellets were extracted in 2.5 ml of methanol (MeOH), 2% acetic acid, 2 ml of water, and 2.5 ml of CH2Cl2. Samples were centrifuged 6 min at 2500 rpm, and the bottom phase was put into new tubes for hydrolyzation. The lipid extract was hydrolyzed in KOH (0.5 M in methanol) at 55°C for 30 min and transmethylated in 1 ml of BF3-methanol and 1 ml of heptane at 80°C for 1 h. After the addition of 1 ml H2O to the crude, FAs methyl esters extract was extracted with 2 ml of heptane, dried, and dissolved in 20 μl of EtOAc. One microliter of FAs methyl esters extract was analyzed by GC on a Clarus 600 PerkinElmer system using a FameWax RESTEK fused silica capillary column (30 m × 0.32 mm, 0.25 μm film thickness). Oven temperature was programmed from 110°C to 220°C at a rate of 2°C/min and the carrier gas was hydrogen (0.5 bar). The injector and the detector temperatures were at 225°C and 245°C, respectively. All of the quantitative calculations were based on the chromatographic peak area relative to the internal standards (ISs).
Free fatty acid metabolites profiling
Bioactive lipids were quantified from bacteria, mouse colons, bloods, and BAT by MS after lipid extraction as previously described (15). After the addition of 500 μl of PBS, and 5 μl deuterated IS mixture (5-HETEd8, LxA4d4, and LtB4d4), the colons were crushed in lysing MatrixA tubes in a precellys (Bertin Technologies). After two crush cycles (6.5 ms−1, 30 s), 10 μl of suspensions were withdrawn for protein quantification and 0.3 ml of cold MeOH were added. The samples were centrifuged at 1016 g for 15 min (4°C), and the resulting supernatants were submitted to solid-phase extraction of lipids using hydrophilic-lipophilic-balanced plate (OASIS® hydrophilic-lipophilic-balanced 30 mg, 96-well plate, Waters, Saint-Quentin-en-Yvelines, France). Briefly, plates were conditioned with 500 μl MeOH and 500 μl H2O/MeOH (90:10, v/v). Samples were loaded at a flow rate of about one drop per 2 s and, after complete loading, columns were washed with 500 μl H2O/MeOH (90:10, v/v). The phase was thereafter dried under aspiration, and lipids were eluted with 750 μl MeOH. Solvent was evaporated under N2, and samples were resuspended with 140 μl MeOH and transferred into a vial (Macherey-Nagel, Hoerdt, France). Finally, the 140 μl of methanol were evaporated and our sample resuspended with 10 μl of methanol for LC-MS analysis. 6-keto-prostaglandin F1 alpha, thromboxane B2, prostaglandin E2, 8-iso prostaglandin A2, prostaglandin E3, 15-deoxy-Δ12,14-prostaglandin J2 (15d-PGJ2), prostaglandin D2 (PGD2), lipoxin A4 (LxA4), lipoxin B4, resolvin E1, resolvin D1, resolvin D2, resolvin D3, resolvin D5 (RvD5), 7-Maresin 1, leukotriene B4 (LtB4), leukotriene B5 (LtB5), protectin Dx, 18-HEPE, 5,6-diHETE, 9-HODE, 13-HODE, 15-HETE, 12-HETE, 8-HETE, 5-HETE, 17-hydroxydocosahexaenoic acid (17-HDoHE), 14-HDoHE, 14,15-epoxyeicosatrienoic acid (14,15-EET), 11,12-EET, 8,9-EET, 5,6-EET, 5-oxoeicosatetraenoic acid, prostaglandin F2α, 11β-prostaglandin F2α, 13-Oxo-9Z,11E-octadecadienoic acid (13-oxoODE), 9-oxoODE, 10-HODE, 9,10-dihydroxy-12-octadecenoic acid (9,10-DiHOME), 12,13-DiHOME, 9-hydroxy-10,12,15-octadecatrienoic acid, 13-hydroxy-9,11,15-octadecatrienoic acid, 9,10,13-trihydroxy-11-octadecenoic acid and 9,12,13-trihydroxy-11E-octadecenoic acid, 3-hydroxyoctanoic acid (C8-3OH), 3-hydroxydecanoic acid (C10-3OH), 3-hydroxydodecanoic acid (C12-3OH), 3-hydroxytetradecanoic acid (C14-3OH), 3-hydroxyhexadecanoic acid (C16-3OH), 3-hydroxyoctadecanoic acid (C18-3OH), 2-hydroxyhexadecanoic acid (C16-2OH), 2-hydroxyoctadecanoic acid (C18-2OH), C12-asparagine-γ-aminobutyric acid , C12-asparagine, C14-asparagine-γ-aminobutyric acid, C14-asparagine, and C14-asparagine-valine were quantified in bacteria, mouse colons, bloods, and BAT. To simultaneously separate the 57 lipids of interest and three deuterated ISs (5-HETEd8, LxA4d4, and LtB4d4), LC-MS/MS analysis was performed on an ultrahigh-performance liquid chromatography system (UHPLC; Agilent LC1290 Infinity) coupled to an Agilent 6460 triple quadrupole MS (Agilent Technologies) equipped with electrospray ionization operating in negative mode. Reverse-phase UHPLC was performed using a Zorbax SB-C18 column (Agilent Technologies) with a gradient elution. The mobile phases consisted of water, acetonitrile (ACN), and formic acid (FA) [75:25:0.1 (v/v/v)] (solution A) and ACN and FA [100:0.1 (v/v)] (solution B). The linear gradient was as follows: 0% solution B at 0 min, 85% solution B at 8.5 min, 100% solution B at 9.5 min, 100% solution B at 10.5 min, and 0% solution B at 12 min. The flow rate was 0.4 ml/min. The autosampler was set at 5°C, and the injection volume was 5 μl. Data were acquired in multiple reaction monitoring mode with optimized conditions (supplemental Table S1). Peak detection, integration, and quantitative analysis were performed with MassHunter Quantitative analysis software (Agilent Technologies). Blank samples were evaluated, and their injection showed no interference (no peak detected), during the analysis. For each standard, calibration curves were built using 10 solutions at concentrations ranging from 0.95 to 500 ng/ml.
PUFA “epoxy” metabolites profiling
Metabolites were quantified from bacteria, mouse colons, and BAT by MS after lipid extraction as described above except that 30% of MeOH instead of 10% was used for sample preparation, plate conditioning, and washing. 9,10-epoxyoctadecenoic acid (9,10-EpOME), 12,13-EpOME, 5,6-EET, 8,9-EET, 11,12-EET, 14,15-EET, 5,6-dihydroxy-8,11,14-eicosatrienoic acid, 8,9-dihydroxy-5,11,14-eicosatrienoic acid, 11,12-dihydroxy-5,8,14-eicosatrienoic acid, 14,15-dihydroxy-5,8,11-eicosatrienoic acid, 7,8-epoxydocosapentaenoic acid (7,8-EpDPE), 10,11-EpDPE, 13,14-EpDPE, 16,17-EpDPE, 19,20-EpDPE, 7,8-dihydroxydocosapentaenoic acid (7,8-DiHDPE), 10,11-DiHDPE, 13,14-DiHDPE, 16,17-DiHDPE, 19,20-DiHPE, 8,9-epoxyeicosatetraenoic acid (8,9-EpETE), 11,12-EpETE, 14,15-EpETE, 17,18-EpETE, 8,9-DiHETE, 11,12-dihydroxyeicosatetraenoic acid, 14,15-dihydroxyeicosatetraenoic acid, and 17,18-dihydroxyeicosatetraenoic acid were quantified in bacteria, mouse colons, and BAT. To simultaneously separate 28 lipids of interest and three deuterated ISs (5-HETEd8, LxA4d4, and LtB4d4), LC-MS/MS analysis was performed on an UHPLC (Agilent LC1290 Infinity) coupled to an Agilent 6460 triple quadrupole MS (Agilent Technologies) equipped with electrospray ionization operating in negative mode. Reversed-phase UHPLC was performed using a Zorbax SB-C18 column (Agilent Technologies) with a gradient elution. The mobile phases consisted of water, ACN, and FA [75:25:0.1 (v/v/v)] (solution A) and ACN and FA [100:0.1 (v/v)] (solution B). The linear gradient was as follows: 30% solution B at 0 min, 73.5% solution B at 13 min, 100% solution B at 13.10 min, 100% solution B at 16 min, 30% solution B at 16.1. min, and 30% of solution B at 18 min. The flow rate was 0.4 ml/min. The autosampler was set at 5°C, and the injection volume was 5 μl. Data were acquired in multiple reaction monitoring mode with optimized conditions (supplemental Table S2). Peak detection, integration, and quantitative analysis were performed with MassHunter Quantitative analysis software (Agilent Technologies). Blank samples were evaluated, and their injection showed no interference (no peak detected), during the analysis.
Gene expression analysis by real-time qPCR analysis and RNAseq analysis
Total RNA was prepared from tissues using TriPure reagent (Roche). Quantification and integrity analysis of total RNA was performed by running 1 μl of each sample on an Agilent 2100 Bioanalyzer (Agilent RNA 6000 Nano Kit, Agilent).
For qPCR analysis, cDNA was prepared by reverse transcription of 1 μg total RNA using a Reverse Transcription System kit (Promega, Leiden, The Netherlands). Real-time PCRs were performed with the StepOnePlus real-time PCR system and software (Applied Biosystems, Den IJssel, The Netherlands) using Mesa Fast qPCR SYBR Green mix (Eurogentec, Seraing, Belgium) for detection according to the manufacturer’s instructions. RPL19 was chosen as housekeeping gene. All samples were run in duplicate in a single 96-well reaction plate, and data were analyzed according to the 2-ΔΔCt method. The identity and purity of the amplified product were checked through analysis of the melting curve carried out at the end of amplification. Primer sequences for the targeted mouse genes are available in supplemental Table S3.
MPO activity
The tissue-associated MPO assay was performed to quantify the degree of neutrophil infiltration as previously described (16). Briefly, tissue was placed in hexadecyltrimethylammonium bromide buffer (0.5% hexadecyltrimethylammonium bromide in 50 mM potassium phosphate buffer, pH 6) on ice and homogenized. The homogenate was centrifuged at 18,000 g for 20 min at 4°C. Seven microliters of supernatant, in duplicate, were then added to 96-well plates together with 200 μl of a solution of o-dianisidine (0.167 mg/ml) and hydrogen peroxide (500 ppm) in potassium phosphate buffer (50 mM, pH 6). Total protein concentration was determined using the detergent compatible protein assay (Bio-Rad, Nazareth, Belgium). MPO activity in the supernatant was measured at 460 nm and normalized for protein concentration. Results are expressed as percentage of vehicle.
Cytokine quantification by ELISA
Levels of interleukin-6 (IL-6) in the colon were determined by a sandwich-type ELISA technique using the Ready-Set-Go! Kit (eBioscience, Vienna, Austria) following the manufacturer's instructions. Total protein concentration was determined using the detergent compatible protein assay before the ELISA assays were run.
Statistical analyses
Statistical analyses were performed using GraphPad Prism version 9.4.0 (GraphPad Software, San Diego, CA) and RStudio 2022.07.1 for MacOS. Comparison between three or more groups on one time point was performed by one-way ANOVA, followed by Tukey correction and comparison between three or more groups at different time points was performed by two-way repeated measures ANOVA. P <0.05 was considered statistically significant. Outliers were tested and removed using ROUT test, when P <0.01 (Prism 9.4v). We used Rstudio program to perform the bubble plots using the packages tidyverse, dplyr, and ggplot2. To perform the volcano plot, we used the ggrepel package on RStudio. To perform the principal component analysis (PCA) and regularized canonical correlation analysis (rCCA), we used the FactoMineR, factoextra, clusterSim, BBMisc, and MixOmics packages on Rstudio. We used Rstudio program to perform the correlation matrices using tidyverse, dplyr, ggplot2, corrr, corrplot, Hmisc, and psych packages. Correlation analyses were assessed by Spearman’s correlation tests, followed by a Holm’s adjustment for multiple testing.
Results
D. welbionis J115T prevents diet-induced obesity and ameliorates the glycemic profile
We confirmed that the administration of D. welbionis J115T significantly reduced HFD-induced body weight and fat mass gain (Fig. 1A, B). The lower fat mass gain was associated with an overall reduction (35%–50%) in the weight of the different white adipose tissues (visceral adipose tissue, epididymal adipose tissue, and subcutaneous adipose tissue) (Fig. 1C).
To further explore whether the lower fat mass was associated with changes in glucose metabolism, we performed an oral glucose tolerance test. We found that D. welbionis J115T–treated mice exhibited an improved glucose excursion, with a significant normalization of the glycemia at the end of the 2 h period (Fig. 1D). This effect was associated with significantly lower fasted insulinemia, both at baseline and 15 min after glucose administration (Fig. 1E). Consequently, D. welbionis J115T abolished HFD-induced insulin resistance index (Fig. 1F).
D. welbionis J115T produces several lipids linked with beneficial effects
To further decipher the potential mechanisms by which D. welbionis J115T acts on host metabolism, we first investigated total fatty acids by MS after liquid extraction; 21 were quantifiable in the whole bacterium. As a benchmark, we used the probiotic bacterium EcN, which is known to have anti-inflammatory properties (11). Among the lipids, six were very low or not detected in the membrane of D. welbionis J115T as compared to EcN, whereas other lipids were almost only detected in D. welbionis J115T (Fig. 2A, B). Interestingly, C18:2 n-6, precursor of the DiHOME family of lipids, was detected in higher amount than EcN, where it was not detected (Fig. 2A, B).
Next, amongst the 85 lipids quantified by our two methods (supplemental Tables S1 and S2), the concentration of 21 (i.e., PUFA metabolites, hydroxylated on the second or the third carbon, or specific lipopeptides) of them was above the limit of quantification. As shown on the Fig. 2C, among the 21 bioactive lipids analyzed in vitro, 19 were highly concentrated in the pellet of D. welbionis J115T compared to EcN (2–60 times higher), except for C14-3OH and C14-asparagine. Among the most affected, D. welbionis J115T produced a very high amount of 12,13-DiHOME in the D. welbionis J115T samples with a mean of 33,781 pg/mg of protein in the cell pellet (Fig 2D). The quantity was also increased in the supernatant after fermentation, ranging from 1619 ± 154 to 741,157 ± 60,361 pg/ml (Fig. 2D). Strikingly, 12,13-DiHOME has recently been identified as an oxylipin and is currently investigated in metabolic diseases for its effects as stimulator of BAT activity (17, 18, 19). Among the other lipids, the C18-3OH is also increased in D. welbionis J115T compared to EcN. This lipid is particularly interesting as it has PPAR-γ–activating properties (11). We also measured the differential abundance in the culture medium of D. welbionis J115T prior and after fermentation. As shown in Fig. 2D, we observed that although the abundance C18-3OH was high in the bacterium and the supernatant, it might result of accumulation due to its higher concentration in the sterile culture medium. However, for the 12,13-DiHOME, this lipid was lower to nonexistent in the sterile medium than the fermented medium, suggesting the implication of D. welbionis J115T in its production. The 9,10-DiHOME, 9,10,13-trihydroxy-11-octadecenoic acid, and 9,12,13-trihydroxy-11E-octadecenoic acid had the same quantitative profile as the 12,13-DiHOME (Fig. 2D).
D. welbionis J115T abolishes HFD-induced whitening of the BAT and changes bioactive lipids profile
Given that, in vitro, D. welbionis J115T produces high levels of 12,13-DiHOME and other bioactive lipids associated with BAT activity and energy metabolism, we further investigated in vivo its effects on the BAT of the treated mice. Although the decrease in the BAT weight was not significant, we found that D. welbionis J115T significantly reduced the whitening of BAT induced by the HFD (Fig. 2E, F). Indeed, as shown by the histological analysis, D. welbionis J115T decreased lipid droplet size and white-like appearance of the BAT. The quantification of the white area was 45% lower in D. welbionis J115T–treated mice than the HFD. It is worth noting that this effect of D. welbionis J115T has been linked to a higher mitochondrial number and activity (13). We then explored whether daily administration of D. welbionis J115T for several weeks could also affect the lipidomic profile of the BAT. We measured 83 bioactive lipids in the BAT and using PCA and volcano plot, we found that the overall lipidome was not shifted between the HFD group and J115T-treated group (Fig. 3A, B), excepting for two lipids that were markedly affected. The lipid 15d-PGJ2 was increased by 700% in D. welbionis J115T–treated mice as compared to HFD-fed mice (Fig. 3C), whereas 11,12-EET was decreased by 500% in the BAT of D. welbionis J115T as compared to HFD-fed mice (Fig. 3D).
15d-PGJ2 is a metabolite of arachidonic acid (AA), a 20:4 n-6 fatty acid. Interestingly, 15d-PGJ2 has been shown to have a strong affinity for PPAR-γ (20, 21). This nuclear receptor is involved in several biological functions, such as the control of the expression of several genes involved in BAT metabolism such as the uncoupling protein-1 (Ucp1), the PPAR-γ coactivator 1a, the proline-rich domain containing 16 (Prdm16), which are all involved in mitochondria biogenesis, thermogenesis processes, and eventually energy expenditure in AT (22). Accordingly, we found that several genes controlled by PPAR-γ tended to or were significantly upregulated in D. welbionis J115T–treated mice as compared to HFD-fed mice (Fig. 3E). This is consistent with the observed effect on the BAT morphology but also with the conclusion from the rCCA, highlighting correlations between two datasets acquired on the same experiment. Similarly as PCA, rCCA seeks for linear combination between variables, while trying to maximize these correlations (Fig. 3F). Interestingly, this analysis strongly confirmed that 15d-PGJ2 correlated with PPAR-γ and genes related to the BAT activity (Fig. 3F), whereas most of the other lipids were positively correlated with the final BW, final fat mass, insulin resistance index, and whitening of the BAT (Fig. 3F). On the other hand, the 11,12-EET was decreased by D. welbionis J115T treatment.
D. welbionis J115T increases the abundance of 15d-PGJ2, RvD5, and 10,11-EpDPE in the colon
Because D. welbionis J115T produces different bioactive lipids, we sought to investigate whether the treatment induced a shift in the colonic lipid profile, where the bacterium is directly in contact with the tissue. For this, we performed a similar analysis as the one done in the BAT. We analyzed 83 bioactive lipids and performed a PCA between the HFD group and the D. welbionis J115T–treated group (Fig. 4A). As for the BAT, we did not observe any shift in the colon lipid profile following D. welbionis J115T supplementation (Fig. 4A). However, when using the volcano plot (Fig. 4B), we identified three specific lipids that were significantly increased upon D. welbionis J115T treatment compared to HFD mice. First, we found a higher abundance of 10,11-EpDPE in D. welbionis J115T–treated mice (Fig. 4B, C). Next, we also found that the level of the RvD5 was decreased by 60% in the HFD-fed mice but markedly increased by 660%, following D. welbionis J115T supplementation compared to HFD-fed mice (Fig. 4B, D). RvD5 is a lipoxygenase metabolite of DHA (23). This lipid is an attractive inflammation-resolving chemical mediator with its ability to activate host defense system in mice during intestinal inflammation (24, 25). We found that HFD-fed mice exhibited a lower expression of mucin 2 (Muc2), the antimicrobial peptide angiopoietin 1 (Ang1), as well as three histone deacetylases (Hdac1, Hdac2, and Hdac3), nitric oxidase 2 (Nos2), and PPAR-γ (Pparg). Finally, we observed a marked increase of 15d-PGJ2 in D. welbionis J115T–treated mice (Fig. 4B, E). 15d-PGJ2 has also been shown to reduce intestinal inflammation in a murine dextran sulfate sodium (DSS)-induced colitis model (26, 27). It is worth noting that in this study, mice are not developing specific inflammatory phenotype in the colon, as the expression level of the inflammatory marker the serum amyloid A3 (Saa3) remains unchanged (Fig. 4F). Given that D. welbionis J115T markedly increased the colonic content of two interesting bioactive lipids with anti-inflammatory properties in our study, we tested whether the administration of D. welbionis J115T could reduce DSS-induced inflammation. In a preliminary experiment, we found that D. welbionis J115T did not affect DSS-induced body weight loss after one week of D. welbionis J115T pretreatment (supplemental Fig S1A). Conversely, D. welbionis J115T significantly reduced the weight over length (W/L) ratio, a key marker of colitis. MPO activity, a marker of neutrophil recruitment, was also decreased, as was decreased the colonic content of (IL-6) (supplemental Fig S1B–D), thereby confirming potential anti-inflammatory properties.
D. welbionis J115T supplementation changes several blood lipids with potential metabolic effects
To complement the analyses performed in colon and BAT, we performed a similar analysis in the plasma. When performing a PCA, we observed that the overall lipidome was not shifted between the three different groups. But by analyzing each lipid distribution separately (Fig. 5A), we first measured a normalization in the levels of the prostaglandin D2 (PGD2) following D. welbionis J115T treatment, which is the precursor of 15d-PGJ2 (Fig. 5B). However, we observed a significant decrease in the levels of 15d-PGJ2 in the HFD group and this was even more pronounced in the D. welbionis J115T treated group (Fig. 5C). We measured a 3-fold increase of 17-HDoHE, a precursor of RvD5 and PPARγ agonist (28), in D. welbionis J115T-treated group compared to HFD (Fig. 5D). Hydroxylated lipids 2-hydroxyoctadecanoate (C18-2OH), 3-hydroxyhexadecanoate (C16-3OH) and 3-hydroxymyristate (C14-3OH) were all significantly decreased by D. welbionis J115T supplementation in the plasma (Fig. 5E–G). The 3-hydroxyoctadecanoate (C18-3OH) was significantly decreased following HFD treatment and increased with D. welbionis J115T supplementation (Fig. 5H). D. welbionis J115T supplementation increased C18-3OH levels in the plasma (Fig. 5H). This lipid was highly present at the level of the bacteria and in the supernatant, and is a potent PPAR-γ-activator with anti-inflammatory effects demonstrated in the colon (11).
Apart from these, we found an increase in several other bioactive lipids. The 14,15-EET was significantly increased by D. welbionis J115T treatment (Fig. 5I), and 14,15-EET generated from AA by cytochrome P450 epoxygenases is a PPAR agonist and has beneficial effects on insulin resistance, cardiovascular diseases and inflammation (29, 30, 31, 32). The lipid 12-HETE, which is a PPAR-γ agonist (33), was significantly decreased following HFD treatment and increased with D. welbionis J115T supplementation (Fig. 5J), this lipid has been shown to reduce fasted glycemia, AT inflammation and to improve glucose tolerance in obese and diabetic mice (33). Both 9- and 13-oxo-octadecadienoic acid (9- and 13-oxo-ODE) were decreased in D. welbionis J115T-treated group compared to control and HFD group (Fig. 5K, L), both derived from linoleic acid. Finally, 9 and 10-hydroxy-octadecadienoic acid (9-HODE and 10-HODE) were significantly decreased by D. welbionis J115T compared to control and HFD group (Fig. 5M, N), these lipides have been shown to be higher in several diseases such as obesity, diabetes, cardiovascular diseases and inflammation (34, 35, 36). Altogether, these data contribute to the understanding of the beneficial effects of D. welbionis J115T and uncover potential beneficial bioactive lipids circulating in the blood of treated mice, despite not depicting a complete picture.
Discussion
In this study, we first confirmed that D. welbionis J115T reduces HFD-induced body weight gain, fat mass gain, and glucose intolerance. We further discovered that D. welbionis J115T produces numerous lipids among which bioactive lipids known to act on energy metabolism by increasing BAT activity and to have anti-inflammatory properties. Interestingly, EcN has been used as a probiotic and shown to produce several bioactive lipids (11, 37). By comparing the composition of the free fatty acids of D. welbionis J115T with EcN, we discovered that D. welbionis J115T not only produces similar families of fatty acids and in a much larger proportion, but between 2 and 60 times higher levels than EcN.
Among them, we found that D. welbionis J115T produces a very large quantity of 12,13-DiHOME compared to the other lipids measured (40,000 compared to 0–20 000 pg/mg of protein for the other lipids). This lipokine is known to induce thermogenic activities, following a cold exposure or physical exercise (17, 18). Whether the effects of D. welbionis J115T are due to the production of this specific bioactive lipid remains to be proven. However, we found that besides the lower fat mass, D. welbionis J115T–treated mice also displayed a lower whitening of the BAT. We also previously discovered that D. welbionis J115T increased the number of mitochondria in the BAT of HFD-treated mice (13), thereby suggesting a putative link with the production of 12,13-DiHOME. Whether D. welbionis J115T is one of the key bacteria producing 12,13-DiHOME in the gut remains unknown. For the production of 12,13-DiHOME from 12,13-EpOME, the bacterial enzyme serum epoxide hydrolase has not been identified in D. welbionis J115T genome, suggesting that another mechanism is implicated in its synthesis.
We also observed an overall increase of lipids hydroxylated on the second and third carbon. In the genome of D. welbionis J115T, we found several enzymes involved in the synthesis pathway of these lipids such as alpha/beta hydrolases (data not shown). Among these lipids, we noticed that D. welbionis J115T contains a large amount of the long-chain fatty C18-3OH, a lipid that we already identified as anti-inflammatory and produced by EcN (11). We previously showed that the oral administration of C18-3OH decreased a DSS-induced colitis in mouse and discovered that C18-3OH is a PPAR-γ agonist (11). Strikingly, this lipid is five times more produced by D. welbionis J115T than EcN. The high level of C18-3OH in the culture medium suggests the potential of D. welbionis J115T to accumulate this lipid during the culturing process, and thereby potentially contributing to its beneficial effects observed in vivo. Whether D. welbionis J115T is able to produce this lipid remains unclear. In the genome of D. welbionis J115T, alpha/beta hydrolase enzymes have been identified and can be implicated in the formation of C18-3OH. On the other hand, this fatty acid has been shown to be part of the lipid A in lipopolysaccharides and therefore it is plausible that D. welbionis J115T as Gram-negative bacterium accumulates and or produces C18-3OH. But still, it remains to investigate the exact lipopolysaccharides composition of D. welbionis J115T.
To further decipher whether D. welbionis J115T treatment modified the lipid profile in different organs, we next measured 78 lipids in the BAT, the colon and in the blood. Interestingly, we observed an increase in C18-3OH in the plasma of mice receiving D. welbionis J115T treatment. Suggesting that the bacterium is not only able to increase C18-3OH in vitro but also in vivo. In the plasma, we also found an increase in 9-oxoODE and 13-oxoODE. These lipids are positively associated with metabolic syndrome (38), and 13-oxo-ODE has PPARγ-activating properties (39). Similarly, the lipids 9- and 10-HODE are also increased in pathological conditions such as diabetes, obesity and cancer, and 9-HODE has been shown to decrease following healthy diets and loss of body weight (35, 36). 10-HODE is positively associated with fasting glucose plasma levels and plasma glucose levels after glucose administration during an oral glucose tolerance test, which makes this lipid suitable as biomarker for the early detection of impaired glucose tolerance (40). Two other derivates of AA were increased by that D. welbionis J115T supplementation, namely 12-HETE and 14,15-EET. Both lipids are implicated in obesity, diabetes and 14,15-EET also shows potential anti-inflammatory properties, potentially mediated by its PPAR agonist properties (29). Interestingly, 12-HETE has been recently identified as a new enterosyne (i.e., active molecule acting in the gut environment) and is known as the second messenger of the enkephalin/MOR pathway acting on PPARγ in different organs (e.g., brain, liver, AT) thereby reducing glycemia, inflammation and improving glucose metabolism (33).
Three hydroxylated lipids, namely C18-2OH, C14-3OH and C16-3OH, were decreased in the blood following D. welbionis J115T treatment. However, this observation may simply be a reflect of the increased adiposity in HFD treatment and is therefore decreased upon D. welbionis J115T supplementation along with decreased measured adiposity in our mice. Nevertheless, C14-3OH is a lipid enriched in obese patients with T2D mellitus and is associated with fasting glucose, glycated hemoglobin and HOMA-IR (41, 42). Interestingly, C18-2OH was shown to be increased in high-risk cardiovascular disease diabetic patients (43) and patients with BMI exceeding 25 (44), just as C14-3OH is a lipid enriched in obese patients with T2D mellitus (41, 42).
In the BAT, we found that two lipids were significantly changed by D. welbionis J115T. The lipid 11,12-EET was increased by the HFD and decreased upon D. welbionis J115T supplementation. This AA derivate has been proposed to improve wound healing in ob/ob mice (45). We also found a marked increase of 15d-PGJ2, a member of the cyclopentenone prostaglandin (PG) group. PG are key mediators of inflammation and their production changes during the different stages of inflammation. Cyclopentenone PG are produced to terminate inflammation with their immunomodulatory and anti-inflammatory properties (46). 15d-PGJ2 is a strong PPAR-γ agonist, therefore we measured several targets of this nuclear receptor increased in mice treated with D. welbionis J115T. Accordingly, in the present study, we found a higher expression of several genes involved in BAT activity. Overall, several lipids either produced by D. welbionis J115T or increased in the tissues of treated mice are PPAR-γ agonists, suggesting that the observed beneficial effects on the metabolism are at least partially due to a modulation of this target’s activity. Given that the two lipids derive from AA that has not been found at the level of the bacteria, we cannot state if the changes in lipids measured in the BAT are due to production of these lipids by the bacteria after oral administration, or if they are an indirect effect of BAT responding to the administration of D. welbionis J115T.
The same 83 lipids were analyzed as well in the colon and three of them were significantly changed upon D. welbionis J115T treatment. The 10,11-EpDPE is strongly increased by D. welbionis J115T. This bioactive lipid has been shown to have antihyperalgesic effects (47) and to be negatively associated with major depression scores in type 2 diabetic patients. People with T2D mellitus are at increased risk for depression (48). The second lipid markedly affected was the RvD5, a lipid known as proresolving mediator in intestinal inflammation (25, 49). In our study RvD5 was decreased by the HFD and strongly increased by D. welbionis J115T treatment. RvD5 was not detected in the sterile neither in the sterile culture medium nor in the fermented medium and the bacteria. Therefore, the bacteria cannot take them up and transfer them from the sterile medium, but we may speculate that the bacteria simply stimulate host responses that cause them to be made. Moreover, we found that its precursor 17-HDoHE was increased in the plasma of treated mice. To further elucidate, the mechanism by which D. welbionis J115T increases the precursor and RvD5 might be studied by using different models such as for instance ex vivo approaches using culture of colonic tissue in presence of D. welbionis J115T or intestinal cell lines. However, given that the precursor of RvD5 was increased in the plasma of D. welbionis J115T, we may not exclude that the source may come from other tissues or even from multiple organs. Although, we found a higher abundance of 10,11-EpDPE in the colon of D. welbionis J115T–treated mice, this lipid was not detected in the sterile medium and in the bacteria, thereby suggesting that the origin was not directly D. welbionis J115T but rather a change from the host production. 10,11-EpDPE is produced from DHA C22:6n-3 fatty acids that are highly produced in D. welbionis J115T compared to EcN (Fig. 2B)
Furthermore, in the colon we observed an increase in 15d-PGJ2, a lipid also higher in the BAT of D. welbionis J115T–treated mice and known to have anti-inflammatory properties. For instance, this lipid has been shown to ameliorate DSS-induced colitis in mice (26, 27). Similarly to BAT, the increase of these lipids may derive from the culture of D. welbionis J115T, but also could be due to changes in the colon following D. welbionis J115T administration. In this scope, we measured in the blood an increase in the 15d-PGJ2 precursor PGD2 following D. welbionis J115T treatment, but a decrease of 15d-PGJ2. However, research shows that the levels of 15d-PGJ2 in plasma of diabetic patients was increased compared to control plasma (50), potentially showing different effect in the plasma compared to tissues. In a previous study, we observed a reduction of this specific lipid in DSS-induced colitis in mice (51). However, in the present study, the HFD treatment was not sufficient to induce an inflammatory phenotype in the colon, hence potentially not enabling D. welbionis J115T to exert specific anti-inflammatory effects.
However, since two lipids augmented in the D. welbionis J115T supplemented mice colon have anti-inflammatory properties and that D. welbionis J115T also contains anti-inflammatory mediators such as C18-3OH in vitro, we further investigated whether D. welbionis J115T could induce effects on acute inflammatory mouse model. In a first preliminary experiment, we found that D. welbionis J115T as potential beneficial effects on three key hallmarks of colitis such as W/L ratio, MPO activity, and IL-6 levels in the colonic tissue. Whether these effects are due to one or several lipids produced by D. welbionis J115T warrants further investigation.
Altogether, our data show that the newly isolated commensal bacterium D. welbionis J115T produces numerous bioactive lipids in vitro and increases the production of different lipids known to act on both the BAT and the colon. Whether the effects of these lipids are mediating all the beneficial effects of the bacterium remains unknown. A major limitation of our study is that at this stage we are unable to fully explain the mechanisms related to the endogenous modulation of different bioactive lipids in the colon and the BAT. It remains very challenging to understand exactly how D. welbionis J115T might account for the reported metabolic effects and if these are only related to the modulation of bioactive lipids.
Nevertheless, our findings support that the beneficial effects of D. welbionis J115T are at least associated with the modulation of the abundance of several key bioactive lipids acting on either glucose, lipid, energy metabolism, and inflammation.
Data availability
All data are contained within this article. The raw data will be shared upon request: Contact Patrice D. Cani (UCLouvain, Email: Patrice.cani@uclouvain.be).
Supplemental data
This article contains supplemental data.
Conflict of interest
M. A. is research associate and P. D. C. is honorary research director at FRS-FNRS (Fonds de la Recherche Scientifique). P. D. C. and E. M. d. H. are inventors on patent applications dealing with the use of specific bacteria and components in the treatment of different diseases. P. D. C. was cofounder of The Akkermansia Company SA and Enterosys. The other authors declare that they have no conflicts of interest with the contents of this article.
Acknowledgments
We thank A. Puel, S. Genten, H. Danthinne, B. Es Saadi, L. Gesche, and R. M. Goebbels (at UCLouvain, Université catholique de Louvain) for their excellent technical support and assistance.
Author contributions
P. D. C. conceptualization; E. M. d. H., C. P., M. A., C. D., P. L. F., M. V. H., G. G. M., N. C., and P. D. C. data generation; E. M. d. H., M. A., and G. G. M. mouse husbandry and experiments; C. P., P. L. F., and N. C. mass spectrometry; E. M. d. H. and C. D. biostatistics; P. D. C., N. M. D., G. G. M., and N. C. resources; P. D. C. project supervision; P. D. C and E. M. d. H. writing-original draft; E. M. d. H., C. P., M. A., C. D., P. L. F., N. M. D., M. V. H., G. G. M., N. C., and P. D. C. writing-review and editing.
Funding and additional information
P. D. C. is recipient of Grants from FNRS (Projet de Recherche PDR-convention: FNRS T.0030.21, CDR-convention: J.0027.22, FRFS-WELBIO: WELBIO-CR-2022A-02, EOS: program no. 40007505) and ARC (action de recherche concertée: ARC19/24–096) and La Caixa (NeuroGut).
Supplementary Data
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
All data are contained within this article. The raw data will be shared upon request: Contact Patrice D. Cani (UCLouvain, Email: Patrice.cani@uclouvain.be).