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PLOS One logoLink to PLOS One
. 2023 Oct 4;18(10):e0292427. doi: 10.1371/journal.pone.0292427

Prognostic factors influencing HIV-free survival among infants enrolled for HIV early infant diagnosis services in selected hospitals in Nairobi County, Kenya

Elizabeth Mueke Kiilu 1,*, Simon Karanja 2,#, Gideon Kikuvi 2,#, Peter Wanzala 3
Editor: Simon Timothy Abrams4
PMCID: PMC10550113  PMID: 37792795

Abstract

Background

Despite being a preventable disease, pediatric HIV infection continues to be a public health concern due to the morbidity and mortality associated with the disease. Vertical transmission of HIV occurs when a mother living with HIV passes the virus to her baby during pregnancy, childbirth, or breastfeeding. Globally, the vertical transmission rate of HIV is 9% with sub-Saharan Africa accounting for 90% of these infections. In Kenya, the national vertical transmission rates of HIV stood at 11.5% by the end of 2018, with a target to reduce vertical transmission rates to below 5% and 2% in breastfeeding and non-breastfeeding infants respectively, by the end of 2021.

Objective

To determine the prognostic factors influencing HIV-free survival among infants enrolled for HIV early infant diagnosis (EID) services in selected hospitals in Nairobi County, Kenya.

Methods

A prospective cohort study design was adopted. HIV exposed infants were recruited at six weeks to determine HIV-free survival over 12 months follow up. Simple random sampling was used to select 166 infants and data were collected from the mothers using semi-structured interviewer-administered questionnaires. Log-rank tests were used to test for associations at the bi-variable level while Cox-proportional regression was used to analyze data at the multi-variable level, with the aid of STATA 14 software. Ethical approval was obtained from Kenya Medical Research Institute, Scientific Ethics Review Unit.

Results

The overall infant HIV incidence rate over one-year follow-up was 9 cases per 100 person-years (95% CI: 5.465–16.290). The failure event was defined as an infant with a positive PCR test during the study period with total failures being 13 (9.41%) over 12 months. Prognostic factors associated with poor infant HIV-free survival were young maternal age (18–24 years) and mothers with a recent HIV diagnosis of ≤ 2 years since a positive HIV diagnosis (HR 5.97 CI: 1.20, 29.58) and (HR 6.97 CI: 1.96, 24.76), respectively.

Conclusion

Maternal prognostic factors associated with poor infant HIV-free survival were young maternal age (18–24 years) and recent maternal HIV diagnosis of ≤ 2 years since positive HIV diagnosis. The study recommended the development of an intervention package with more rigorous adherence counseling and close monitoring for young mothers, and mothers with recent HIV diagnoses.

Introduction

Globally, vertical transmission of Human Immunodeficiency Virus (HIV) accounts for more than 200,000 new infections in children yearly with 90% of these infections happening in Sub-Saharan Africa. This has necessitated the World Health Organization (WHO) to create a task force to spearhead the elimination of mother-to-child transmission (eMTCT) of HIV and syphilis by 2030 and, together with other development partners formed a global criterion to validate the elimination of vertical transmission of HIV [1]. Several countries have been successfully validated as having successfully eliminated the vertical transmission of HIV and Syphilis including Cuba Republic of Moldova, Thailand, Belarus, Armenia, and recently in 2022, Oman [1, 2]. These accomplishments of elimination of vertical transmission of HIV are due to the integration of MCH with sexual, reproductive health, and HIV services alongside the engagement of communities and outreach initiatives to reach marginalized populations [1].

In Kenya, the elimination of vertical transmission of HIV and early infant diagnosis (EID) cascades of care/guidelines are contained in the Kenya framework for eMTCT of HIV and syphilis, Guidelines on Use of antiretroviral (ARV) drugs for preventing HIV infection in Kenya [3]. This guideline is then adopted by the 47 counties within the country to make county specific guidelines. This guideline stipulates care and treatment modalities for mothers living with HIV during pregnancy, delivery and up to 18 months or up to the cessation of breastfeeding, whichever comes first. In summary, the guidelines stipulate that testing for HIV in HIV exposed infants be done at 4–6 weeks of life or at the earliest opportunity thereafter. All infants should be initiated on prophylaxis at birth and mothers must continue with their highly active antiretroviral therapy (HAART) regimen (first or second-line ART regimens) throughout the pregnancy and breastfeeding periods and continue taking ART for life.

HIV-free survival was proposed by WHO as the gold standard for the measurement of prevention of vertical transmission of HIV and EID program effectiveness based on maternal-related factors, child factors and health system-related factors [1]. Infant HIV-free survival in HIV-exposed infants is one of the most important measures of prevention of vertical transmission of HIV and EID program effectiveness, which not only acknowledges the availability, and effectiveness of therapeutic interventions but also the competing threats to infant HIV-free survival [3].

Methods

The study adopted a prospective cohort study design approach whereby mother-infant pairs were followed up for 12 months. The study was conducted in the following public healthcare facilities: Mathare North Health Centre, Mbagathi County Hospital, and Kibera South Health Centre in Nairobi County within the catchment area of Kibera and Mathare informal settlements. These study sites were chosen because approximately 60–70% of urban dwellers in Kenya are believed to be living in informal settlements [4, 5] with a 12% prevalence of HIV compared to a 5% prevalence among non-slum dwellers. The study population was infants born to mothers living with HIV enrolled for EID services at Mathare North Health Center, Mbagathi County Hospital, and Kibera South Health Center in Nairobi County.

Survivorship in this study was defined in terms of infant HIV status at the end of 12 months whereby the infant is HIV-free between 6 weeks (when the first Polymerase Chain Reaction-PCR test is undertaken) and 12 months of age.

A total of 166 participants were selected using simple random sampling with the sampling frame being the post-natal registers in the three identified healthcare facilities. The formula for calculating sample size for longitudinal studies was used as shown below:

n=[Z∝√1+m1p*(1–p*)+Zβ√p1(1–p1)/m+p2(1–p2)]2(p1–p22)

Where:

P1 = 0.45 (Proportion of HIV positive infants born to mothers on ART in 2015- GOK (Government of Kenya), 2016)

P2 = 0.14 (Proportion of HIV positive infants born to mothers not on ART in 2015 -GOK, 2016)

p1 = response proportion in group 1 (q1 = 1 − p1)

p2 = response proportion in group 2 (q2 = 1 − p2)

p¯ = (p1 + p2)/2

q¯ = 1 − p¯ = 1.96

The study was powered at 0.80 with the level of significance set at 0.05%. A sample size of 166 respondents (after adjusting for 40% loss to follow-up) was selected, with 163 (98.2%) respondents participating in the study. The distribution of infants selected in the three facilities was based on the number of mothers living with HIV that attended the PMTCT clinics in the selected healthcare facilities between October 2015 and October 2016. They were then selected proportionally based on the number of mothers living with HIV that attended the PMTCT clinics in each of these three healthcare facilities. In Mathare North health center (MNHC) 80 infants were selected, in Kibera South health center (KSHC) KSHC 60 infants were selected, while in Mbagathi County hospital (MDH) 26 infants were selected. This gave a total of 166 infants selected to participate in the study.

Simple random sampling technique was used to select the study participants using tables of random numbers. The postnatal register was used as a sampling frame from which participants who met the inclusion criteria were selected. Once selected from the postnatal register, the mother-infant pairs were interviewed as they came for EID services from 2 weeks to 6 weeks after birth. The inclusion criteria constituted: HIV-exposed infants at the age of 2 weeks post-delivery up to ≤ 6 weeks of age, HIV-exposed infants whose mothers were registered in the Comprehensive Care Clinic (CCC) of the selected facilities (CCC is where all clients living with HIV seek care and treatment), and HIV-exposed infants whose mothers agreed to participate in the study. The exclusion criteria were HIV-exposed infants whose mothers had visited the CCCs in the selected hospitals but were in transit and, HIV-exposed infants whose mothers were newly transferred from other healthcare facilities (had been in the CCC for less than one year prior to the study onset). These mother-infant pairs were excluded from the study as some of these mothers had not had their records transferred from their previous care centers, this then would be hard to corroborate the history obtained from the mothers.

Recruitment of infants into the study was conducted 2 weeks after delivery. The infants were followed up for 12 months to assess their HIV status. Infants’ follow-up was done in their first year of life as morbidity and mortality among HIV exposed infants is highest within this period. Infant follow-up was scheduled to coincide with the Kenya Expanded Program for Immunization (KEPI) timetable at 6, 10, 14 weeks, and 12 months. The infants were also followed up at 6 months as per the Government of Kenya (GOK) EID schedule (GOK, 2016).

Results for the HIV virological testing and other health parameters were collected from HIV-exposed infants at 6 weeks, 6 months, and 12 months. All HIV exposed infants recruited into the study were screened for HIV using the PCR test. The PCR results were obtained from the PCR testing laboratories as documented in the EID registers of the respective healthcare facilities. A scheduled visit was considered a delayed visit if the mother failed to return within one week of the scheduled appointment. The EID process from birth to the announcement of the infants’ results to the mothers was considered to be ‘‘complete” if the PCR tests were performed at the scheduled time points and the final PCR results were provided to mothers at 12 months of the infant’s age. The vital status of infants who did not return for a follow-up visit was determined by phone calls at 12 months, and an oral interview was conducted to establish reasons for loss to follow up. Infants were considered lost to follow-up (LTFU) if they delayed for more than one week of their scheduled appointment and could not be traced through the defaulter tracking system.

A semi-structured interviewer-administered questionnaire was adopted and customized from the World Health Organization data collection and analysis tools for HIV. The semi-structured interviewer-administered questionnaire was used to collect information from the mothers living with HIV by the researcher. The researcher was assisted by six research assistants. Data collection was done at scheduled time points at 6, 10, and 14 weeks, 6 months, and 12 months in the selected healthcare facilities. The semi-structured interviewer-administered questionnaires collected the following data: socio-demographic and socio-economic data of the mother, disclosure of HIV status, maternal characteristics during while attending the prevention of vertical transmission sessions, infant feeding practices, and ART adherence.

A data abstraction tool was used to collect quantitative data from the mother’s health records. The data abstraction tool collected information from the mothers’ CCC follow-up file on maternal body mass index (BMI), viral load count, HIV staging, ART adherence, ART regimen, and presence of opportunistic and co-infections in the mother. The collected data was presented in tables and charts. To test the validity of the instrument, a pretest of the data collection tools was done at Langata Health Centre, which has a system almost similar to the selected hospitals and serves the Kibera and Mathare catchment population. In total, 10% (16) of the questionnaires were used to assess the reliability of the questionnaires. The data collected was analyzed, summarized and the findings disseminated to the providers at Langata Health Centre. The reliability of the data collection tool was tested using Cronbach’s alpha technique whereby reliability indexes obtained in the study were all above 0.7 and deemed acceptable.

Data cleaning, coding, and analysis were done using STATA Version 14. Descriptive statistics were used to explore and summarize the data. The HIV-free survival function (the outcome of the study) was assessed using Kaplan- Meier (gave a summary of the HIV-free Survival function and Hazard functions) and Mantel Log-rank was used to test for association between the identified variables. Cox-proportional Hazard test at the multi-variable level tested for the relative risk of the event occurring (infants converting from HIV negative to HIV positive).

The Z values and corresponding p-values and Hazard ratios and their corresponding confidence intervals were reported. Hazard ratio can be considered as an estimate of relative risk, which is the risk of an event (or of developing a disease) relative to exposure. In adjusted hazard ratios if the hazard ratio is > 1, it indicates that the treatment group has a shorter survival than the control referenced group, and if it is < 1, it indicates that the group of interest is less likely to have a shorter time to the event than the reference group. Cumulative incidence function was used to model for possible competing interests i.e., death and transfer outs. Finally, the proportional hazard assumption using Schoenfield’s residual was used to assess the best-fit model by ensuring that the Cox-hazard assumption was met. The level of significance was set at P <0.05 at 95% confidence interval. The study was powered at 80%. All significant variables at p = <0.1 were used in the forward and backward modeling process to determine the best model using only two prognostic variables. Modeling to choose the most appropriate model from several other competing models was done using Akaike’s Information Criteria (AIC). The Schoenfeld residual test was used to assess if the Cox-hazard proportion assumption was met for each model created.

The researcher received ethical approval to conduct the study from the Kenya Medical Research Institute (KEMRI) Scientific Ethics Review Unit (SERU), KEMRI/SERU/CPHR/002/3525. Clearance to carry out the study was given by the Board of Postgraduate Studies (BPS) of Jomo Kenyatta University of Agriculture, Science, and Technology (JKUAT). Permission to carry out the study was also granted by the Nairobi County Ministry of Health and the Medical Superintendent of the facilities where the study was conducted. Informed written consent was obtained from all the mothers, and the benefits and risks of the study were explained to them too. Confidentiality, privacy, and anonymity were maintained, and participants were free to withdraw from the study without implications for the mother-infant pairs.

Results

A total of 166 mother-infant pairs were recruited for the study and 163 (98.2%) mother-infant pairs participated at the beginning of the study (6 weeks). The 3 (1.8%) mother-infant pairs were censored from the study before 6 weeks of age as follows: at two and a half weeks one infant transferred out of Mathare North Health Center, at three weeks one infant died and at five weeks another one infant died. At six months, 22 mother-infant pairs were LTFU, and 10 more mothers were LTFU at 12 months. Thirteen infants turned HIV positive over the 12-month follow-up period.

Most of the mothers 75(45%) were aged between 25–34 years while the rest were aged between 18–24 years and 35–44 years, 34(20%) and 57 (34.3%) at recruitment. Slightly above half 93 (56.0%) of the participants had a primary level of education or below. The majority of the mothers were married 141 (84.9%) at recruitment and 113 (86.3%) at the endpoint. Most of the mothers had informal employment 108 (65.1%) at recruitment and 79 (60.3%) at endpoint, with slightly above half of the mothers 95 (57.2%) with a household income that ranged between Ksh. 6001–12000 (Table 1).

Table 1. Socio-demographic and socio-economic characteristics of HIV positive mothers.

Maternal characteristics Time-points Recruitment (6 weeks) Endpoint (12 months)
Frequency (%) (n = 163) Frequency (%) (n = 131)
Age in completed years
18–24 34(20.5) 27(20.6)
25–34 75(45.2) 58(44.3)
35–44 57(34.3) 46(35.1)
Highest Level of Education
≤Primary 93(56.0) 75(57.3)
≥Secondary 73(44.0) 56(42.8)
No. of persons living in the household
2–5 121(72.9) 88(67.2)
6–8 45(27.1) 43(32.8)
Respondent marital status
Single 25(15.1) 18(12.7)
Married 141(84.9) 113(86.3)
Employment status
Formal 27(16.3) 21(16.0)
Informal 108(65.1) 79(60.3)
Unemployed 31(18.6) 31(23.7)
Monthly income (Ksh.)
≤6000 34(20.5) 37(28.2)
6001–12000 95(57.2) 67(51.2)
≥ 12001–18000 37(22.3) 27(20.6)

The incidence rate obtained at the end of the 12-month follow up period was 9 cases per 100 person-years (CI 5.43, 6.10). The failure event was 13 (9.41%) at the end of the study time point (12 months). Slightly above half 85 (52.15%) of the infants had timely recruitment (≤ 6 weeks) for EID service delivery.

Kaplan-Meier HIV-free survival estimate curve over a one-year follow-up

Kaplan–Meier estimate curves showed that the probability of HIV–free survival of an infant over a 12-month follow-up period was approximately 91%. (Fig 1).

Fig 1. Kaplan-Meier infant HIV-free survival estimate over a one-year follow-up period.

Fig 1

Kaplan-Meier infant failure estimate curve over a one-year follow-up

Kaplan-Meier failure estimate curves showed that the probability of HIV vertical transmission of an infant over a 12-month follow-up period was 9 cases per 100 person-years (95% CI 5.43, 16.10) (Fig 2).

Fig 2. Kaplan-Meier infant hazard failure estimate over a one-year follow-up period.

Fig 2

Mantel log-rank HIV-free survival estimates for HIV-exposed infants over a one-year follow-up period

The Mantel Log-rank test was used to determine factors associated with HIV-free survival at univariate level (Table 2). At recruitment (6weeks) 161 (97.0%) mothers reported that they were exclusively breastfeeding their infants while 3 (1.8%) did mixed feeding and 2 (1.2%) were on formula milk. Only 75 (53.2%) of the infants were exclusively breastfed for six months, while 64 (45.4%) were mixed fed and 2 (1.4%) were on formula milk for the first six months of their lives. All the infants were put on prophylaxis from birth up to 6 weeks. At 6 weeks, their HIV status was determined using a PCR test for further care and treatment. At 6months and 12 months, PCR tests were repeated on the infants.

Table 2. Maternal factors associated with infant HIV-free survival.

Prognostic factors (n = 131) p-value
Maternal Socio-demographic and economic characteristics
Age in completed years 0.025
Highest Level of Education 0.733
No. of persons living in the household 0.841
Respondent marital status 0.065
Employment status <0.001
Household Monthly income (Ksh) 0.001
Maternal characteristics during PMTCT clinic visits
Year Confirmed Positive <0.001
Mode of Delivery 0.668
Given ART in pregnancy <0.001
Stage ART administered in pregnancy <0.001
Gestation of pregnancy at 1st PMTCT visit 0.923
No of PMTCT clinic visits <0.001
Maternal disclosure status
Have a partner 0.627
Disclosed status to the partner 0.002
Know Partner’s HIV status 0.001
Spouse HIV Status 0.678
Maternal characteristics at 12 Months
ART adherence (Morisky Score) <0.001
Maternal HIV Staging <0.001
ART Regimen <0.001
Viral Load (VL) <0.001
Maternal BMI 0.001
. . .Timeliness into EID enrollment at 6 weeks (recruitment)
. . .among exposed infants
Timeliness at 6 weeks (recruitment) 0.022

Cox regression analysis for maternal factors showing HR and AHR over 12 months follow-up period

Table 3 gives a summary of the Cox regression analysis of maternal factors over a 12-month follow up period f and the corresponding hazard ratios and adjusted hazard ratios.

Table 3. Cox regression analysis of maternal factors showing HR and AHR over 12 months follow-up.

Maternal characteristics (n = 131) Infant Survival over 12M follow-up period
HR (95%CI) AHR (95%CI)
Age in years
35–44 (Ref) 1.00
18–24 5.97(1.20, 29.58)
25–34 1.96 (0.38, 10.13)
Employment
Unemployed (Ref) 1.00
Formal 0.14 (0.02, 1.10)
Informal 0.07 (0.02, 0.31)
Monthly Household Income
≤ 6000 (Ref) 1.00
6001–12000 0.10 (0.02, 0.44)
≥12001–18000 0.12 (0.02, 0.10)
Year confirmed +ve
> 2 years since positive HIV diagnosis 1.00
≤ 2 years since positive HIV diagnosis 6.97(1.96, 24.76)
Disclosed status to partner
Yes (Ref) 1.00
No 5.10 (1.65, 15.82)
Know partner’s HIV status
Yes (Ref) 1.00 1.00
No 5.87 (1.80, 19.16) 4.56(1.27, 16.45)
ART Adherence
Poor (Ref) 1.00
Good 0.05 (0.01, 0.23)
Inadequate 0.14 (0.04, 0.50)
HIV Staging
I (Ref) 1.00
II 17.84 (3.94, 80.89)
Viral Load (VL)
High VL (Ref) 1.00
Undetectable VL 0.02 (0.01, 0.17)
Low VL 0.12 (0.02,0.90)
ART Regimen
Second-line (Ref) 1.00 1.00
First-line 0.03 (0.01, 0.10) 0.03 (0.01, 0.08)
Given ART during pregnancy
No (Ref) 1.00
Yes 0.11 (0.02, 0.52)
Stage ART admin in Pregnancy
Third Trimester (Ref) 1.00
Frist Trimester 0.09 (0.02, 0.31)
Second Trimester 0.38 (0.10, 1.45)
No. of PMTCT visits attended
2 (Ref) 1.00
≤1 0.86 (0.23, 3.26)
≥3 0.12 (0.03, 0.40) 0.04 (0.01, 0.25)
Maternal BMI
Normal (Ref) 1.00
Underweight 6.29 (1.93, 20.47)
Overweight 0.64 (0.12, 3.26)
Obese 0.80 (0.09, 6.90)
Timeliness into EID enrollment
Timely (≤6weeks) (Ref) 1.00
Delayed (>6weeks) 4.00 (1.12, 14.32)

Discussion

Infant HIV-free survival is one of the most important measures of PMTCT and EID programs effectiveness, which not only acknowledges the availability, and effectiveness of therapeutic interventions but also the competing threats to infant HIV-free survival [3]. In the current study, HIV-free survival among the HIV-exposed infants was estimated at 90.7% (with a total person-time of 139.02 days, 95% CI 5.43, 16.10) for the infants aged between 6 weeks and 12 months. Other key findings that influenced infant HIV free survival were that maternal ART regimen, number of PMTCT visits a mother attended and knowledge of partners HIV status. Whereby, mothers who were on the first-line ART regimen experienced lower infant positivity compared to those in the second line regimen. Attendance of more than one PMTCT visit and knowledge of one’s partner HIV status also presented lower odds of infant HIV positivity. The infant HIV-free survival estimated at 90.7% (with a total person-time of 139.02 days, 95% CI 5.43, 16.10) was a finding similar to that in Rwanda 91.9% [6] but lower than what was observed in Zambia 96.3% (95% CI: 94.8, 97.4%) [7], and much higher than in Cameroon (72.6%; 95% CI: 62.3, 80.5) and South Africa (77.7%; 95% CI: 72.5, 82.1) [8]. In a longitudinal study undertaken in Malawi [9] that had a national representation of study participants, the vertical transmission rate of HIV was 4.9% (95% CI 3.7, 6.4%), much lower than what was observed in the current study i.e., 9.41% where the sample was selected from HIV exposed infants only The authors attributed poor infant HIV-free survival to factors similar to those seen in the current study i.e., mothers not disclosing their HIV status to their partners, poor maternal ART adherence and late maternal ART initiation. South Africa [10] had a similar vertical transmission rate of HIV as that seen in Malawi [9] but much lower in than in the current study. However, reasons for poor infant HIV-free survival in the South African study [10] differed from what was seen in Malawi and Kenya and, was attributed to unknown maternal CD4-cell-count undocumented maternal HIV status and exclusive or mixed breastfeeding [10].

Maternal age influenced infant HIV-free survival over the 12 months follow-up period. Younger mothers aged between 18–24 years had a higher hazard ratio (5.97) of infant HIV vertical transmission relative to their older counterparts 36–47 years, a finding similar to what was observed in Rwanda, Malawi Swaziland, and Kinshasa [7, 9, 11, 12] respectively whereby young maternal age was associated with an increased risk of infant HIV vertical transmission. This however differed from findings observed in South Africa where young maternal age was not associated with infant HIV- free survival [13].

Unemployment and low household incomes were facilitators of poor infant HIV-free survival in the current study. Poverty increases the chances of infant HIV vertical transmission [13]. Diagnosing mothers early before pregnancy and putting them on ART improves infant HIV-free survival and reduces infant chances of HIV infection. This was supported by [14] where the authors found that failure to diagnose HIV infection during early pregnancy was a primary reason for missing both prevention of vertical transmission of HIV (PMTCT) and EID interventions contributing disproportionately to new pediatric infections.

In the current study, mothers who had a recent HIV positive diagnosis (within two years of HIV diagnosis) had a higher hazard ratio (HR = 6.97) of infant HIV vertical transmission relative to mothers who had lived with HIV for a period of more than two years. Diagnosis during pregnancy poses a challenge for disclosure and sometimes drug compliance and consequently increases the risk of infant HIV vertical transmission [15].

Mothers who received ART during pregnancy had a lower hazard ratio (HR = 0.11) of infant HIV vertical transmission relative to mothers that had not received ART during pregnancy a finding similar to Rwandan and Ethiopian studies [6, 16] respectively. Adherence to ART reduces the risk of vertical transmission [3]. Attending more than three PMTCT clinic visits had a lower hazard ratio (HR = 0.12) of infant HIV vertical transmission relative to mothers who had attended lesser PMTCT clinic visits. In a retrospective study conducted in Zambia [17] mothers that received antenatal care yielded an estimated 89.8% (95% CI: 86.8, 92.2) infant HIV-free survival, lower vertical transmission of HIV rate and higher retention rates to the PMTCT clinics. Frequent PMTCT clinic attendance allows closer monitoring of ART and prophylaxis adherence, and early identification of complications that could put the infant at an increased risk of vertical transmission [3, 9, 12], A study in Lodwar, Kenya [18] found that mothers who attended more than one PMTCT visit had higher odds of 2.78 (CI: 1.25, 6.17) of administering prophylaxis to their infants relative to mothers who had attended less than one PMTCT visit.

In the current study, non-disclosure of HIV status and not knowing a partner’s HIV status were five times (HR = 5.10) and (HR = 5.87) respectively more likely to experience infant HIV vertical transmission relative to mothers that had disclosed their status and knew their partners HIV status. Male partner involvement through participation in ANC attendance has been associated with enhanced uptake of prevention of vertical transmission of HIV services specifically, improvements in HIV testing and partner disclosure, ART adherence, and improved infant feeding strategies [2]. A study conducted in Papua New Guinea revealed lower infant HIV-free survival (in terms of infant death and infant HIV vertical transmission) and loss to follow-up in mothers that had reported untested or unknown partner HIV status [19]. In Malawi, the findings revealed that male partner involvement was associated with uptake of some PMTCT interventions which ultimately lowered the risk of infant HIV vertical transmission [20]. Male participation during PMTCT clinic attendance improves maternal sexual and reproductive health, reduces stigma and discrimination, and consequently improves infant health outcomes [21, 22]. Non-disclosure of maternal HIV status was associated with an increased risk of vertical transmission of HIV to infants and high maternal viral load [23]. Additionally male involvement increased the incidence of HIV testing and counseling and facilitated partner disclosure [24]. Women in sub-Saharan Africa reported that they faced difficulty in negotiating the use of condoms with their male partners despite the fact that they were aware that some of their partners had multiple sexual partners [25]. A few mothers reported that their partners refused to take their ART, and some even refused to go for HIV testing. Negative male partner behaviors put both the mothers and infants at increased risk of high viral loads and vertical transmission [26].

Underweight mothers had a higher hazard ratio (HR = 6.29) of infant HIV vertical transmission relative to mothers with a normal BMI. A study in Rural Kenya demonstrated that poor nutritional status in mothers living with HIV may impair immunity by weakening the epithelial integrity of the body cells, which in turn increases the risk of infant HIV vertical transmission [27].

Close to a half 81 (48.0%) of the infants had late initiation into the EID (> 6 weeks of age) which led to a higher hazard ratio (4.00) of infant HIV vertical transmission relative to mothers who had enrolled their infants for EID at 6 weeks or earlier. The GOK 2016 guidelines [3] recommend all HIV exposed infants should be enrolled for EID any time from birth up to 6 weeks of age. Globally, it is estimated that nearly half of HIV-exposed infants receive an EID test within the first two months but with wide variations in initiation timeliness in various countries [28]. The success of infant HIV programs is highly dependent on the early identification and enrollment of mother-infant pairs in care and/or treatment [29]. A study conducted in four countries in Asia and Africa (Cambodia, Senegal, Namibia, and Uganda) elicited that the median age of testing among infants referred from PMTCT clinics was approximately 2 months over the life of the program, with less than 50% of these infants being tested well after 2 months of age [30].

This study had several limitations. The exposure history was from the mother’s self-report, and not all the history that was given could be corroborated from the maternal CCC file, Integrated Management of Childhood Illness (IMCI) booklet, and appointment booklets. Where it was not possible to corroborate the mother’s self-report, the questionnaires were structured to counter check the responses asked in a different format within the same questionnaire. Given the phrasing of the questionnaire, it was difficult to determine if the mothers were adherent to ART throughout the pregnancy period, for instance if there were periods of cessation and non-adherence. Adherence, however, was also determined by observation of participant serial viral loads from pregnancy up to one-year post-partum. Due to the small sample size selected, the incidence rate of 9 cases per 100 person-years (95% CI: 5.465–16.290) may have been an underestimation of the true vertical transmission of HIV rates. The small sample size gave wide confidence intervals (CIs) (5.5–16.3) which is not as useful for health policy guidance as narrow CI’s. The population selected for this study was infants born of HIV positive mothers and therefore the estimates of HIV-free survival will be lower than that of the population reality. Another limitation of our study was the lack of detailed data regarding clients that were lost to follow-up since it was not possible to reach them on the phone. Lastly, another limitation of the study was that data on feeding practices were provided in the manuscript. However bivariable and multivariable analysis on the same was not done because there was no way to corroborate the breastfeeding and other feeding options from the mother’s narrative, at the time of the study. One major strength of the study was the longitudinal design, following mother-infant pairs over a 12-month period using survival analysis.

Conclusion

Scaling up care and treatment for mother-infant pairs in resource-limited settings improves overall HIV-free survival among HIV-exposed infants. There is a need to create a special package of care for the younger mothers aged (18–24) and mothers with recent HIV diagnoses (i.e., less than 2 years since HIV positive diagnosis). The special package should have more rigorous adherence and nutritional counseling, with close monitoring of these mother-infant pairs. This should also be accompanied by robust partner HIV status disclosure strategies to enhance partner support for mothers attending the EID services of HIV. These strategies are aimed at improving infant retention and HIV-free survival throughout the EID cascade of care.

Supporting information

S1 Questionnaires

(PDF)

S1 Dataset. Minimal underlying dataset.

(XLSX)

Acknowledgments

I wish to express my most heartfelt and sincere gratitude to the almighty God for the good health, protection, and care that He has granted unto me. My sincere gratitude goes out to all the healthcare workers, healthcare facility in-charges, and the study participants for their support and cooperation, and to all those who assisted in any way during the data collection and analysis period. Special appreciation goes to Prof. Thomas Achia Center for Disease Control (CDC), KEMRI who played a significant role in statistical mentorship.

Data Availability

The minimal underlying data set had been provided as part of supporting files for reviewer access. The data set has been de-identified, however, the data set remains part of the Government of Kenya, Ministry of Health property, and permission to share it publicly needs to be sought from the director general using the following contacts: Dr. Patrick Amoth Ag. Director General for Health at Ministry of Health Ministry of Health, Afya House, Cathedral Road, P.O. Box:30016–00100, Nairobi, Kenya. Email: dghealth2019@gmail.com.

Funding Statement

National Research Fund (NRF)-Government of Kenya, Jomo Kenyatta University of Agriculture and Technology (JKUAT). The funders had no role in the study design, data collection, analysis, decision to publish, or preparation of the manuscript.

References

  • 1.World Health Organization. Validation of elimination of mother-to-child transmission of HIV, syphilis, and hepatitis B. Geneva. 2023.
  • 2.Alusio A, Bosire R, Gatuguta A, Kiarie J, Nduati R, John-Stewart G, et al. Male Partner Participation in Antenatal Clinic Services is Associated with Improved HIV-free survival Among Infants in Nairobi, Kenya: A Prospective Cohort Study. Journal of Acquired Immune Deficiency Syndrome. 2016;169–174. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3.Government of Kenya. Kenya Framework for the Elimination of Mother-To-Child Transmission of HIV and Syphilis. 2016.
  • 4.UN-Habitat. The state of African Cities 2014: Re-imagining sustainable urban transitions. 2014.
  • 5.Corburn J, Hildebrand C. Slum Sanitation and the Social Determinants of Women’s Health in Nairobi, Kenya. Journal of Environmental and Public Health. 2015; 2015:6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Ruton H, Mugwaneza P, Shema N, Lyambabaje A, Bizimana JD, Tsague L, et al. HIV-free survival among nine- to 24-month-old children born to HIV-positive mothers in the Rwandan national PMTCT program: A community-based household survey. Journal of the International AIDS Society. 2012;15(4). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.Chi BH, Mutale W, Winston J, Phiri W, Price JT, Mwiche A, et al. Infant Human Immunodeficiency Virus-free Survival in the Era of Universal Antiretroviral Therapy for Pregnant and Breastfeeding Women: A Community-based Cohort Study from Rural Zambia. Pediatric Infectious Diseases Journal. 2018; 37(11):1137–1141. doi: 10.1097/INF.0000000000001997 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Stringer JSA, Stinson K, Tih P, Giganti M, Ekouevi DK, Creek T. et al. Measuring Coverage in MNCH: Population HIV-Free Survival among Children under Two Years of Age in Four African Countries. PLoS Medicine. 2013;10(5). doi: 10.1371/journal.pmed.1001424 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Lettow MV, Barr BA, Oosterhout JJ, Schouten E, Jahn A, Kalua T, et al. The National Evaluation of Malawi’s PMTCT Program (NEMAPP) study: 24-month HIV-exposed infant outcomes from a prospective cohort study. HIV Medicine. 2021;23:573–584. doi: 10.1111/hiv.13209 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Goga AE, Lombard C, Jackson D, Ramokolo V, Ngandu NK, Sherman G, et al. Impact of breastfeeding, maternal antiretroviral treatment, and health service factors on 18-month vertical transmission of HIV and HIV-free survival: results from a nationally representative HIV-exposed infant cohort, South Africa. Journal of Epidemiology & Community Health 2020;74:1069–1077. doi: 10.1136/jech-2019-213453 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Chouraya C, Machekano R, Mthethwa S, Lindan K, Mirira M, Kudiabor K, et al. Mother-to-Child Transmission of HIV and HIV-Free Survival in Swaziland: A Community-Based Household Survey. AIDS and Behavior. 2018;22:105–113. doi: 10.1007/s10461-018-2121-6 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Ditekemena J, Matendo R, Colebunders R, Koole O, Bielen G, Nkuna M. et al. Health Outcomes of Infants in a PMTCT Program in Kinshasa. Antiretroviral Therapy. 2015;14(5): 449–454. [DOI] [PubMed] [Google Scholar]
  • 13.Sifunda S, Peltzer K, Rodriguez VJ, Mandell LN, Lee TK, Ramlagan S, et al. (2019) Impact of male partner involvement on mother-to-child transmission of HIV and HIV-free survival among HIV-exposed infants in rural South Africa: Results from a two-phase randomized controlled trial. PLoS ONE. 2019;14(6): e0217467. doi: 10.1007/s10461-018-2121-6 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Abrams EJ, Woldesenbet S, Silva JS, Coovadia A, Black V, Technau KG. et al. Despite Access to Antiretrovirals for Prevention and Treatment High Rates of Mortality Persist Among HIV-infected Infants and Young Children. Pediatric Infectious Diseases Journal. 2017;36(6): 595–601. doi: 10.1097/INF.0000000000001507 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Agudu NA, Ramadhani HO, Isah C, Erekaha S, Fan-Osuala C, Anaba U. et al. The Impact of Structured Mentor Mother Programs on Presentation for Early Infant Diagnosis Testing in Rural North-Central Nigeria: A Prospective Paired Cohort Study. Journal of Acquired Immune Deficiency Syndrome. 2017;75: S182–S189. [DOI] [PubMed] [Google Scholar]
  • 16.Derebe G, Biadgilign S, Trivelli M, Hundessa G, Robi Z, Gebre-Mariam M. et al. Determinant and outcome of early diagnosis of HIV infection among HIV-exposed infants in southwest Ethiopia. BMC. 2014;7(309). doi: 10.1186/1756-0500-7-309 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Buzdugan R., McCoy S., Watadzaushe C., Kang D. M., Petersen M., Dirawo J., et al. Evaluating the Impact of Zimbabwe’s Prevention of Mother-to-Child HIV Transmission Program: Mother-to-Child HIV Transmission Program: Mother-to-Child HIV Transmission Program: Population-Level Estimates of HIV-Free Infant Survival Pre-Option A. PLoS ONE. 2015;10(8): e0134571. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18.Ongaki D, Obonyo M, James R. Factors Affecting Uptake of PMTCT Services, Lodwar County Referral Hospital, Turkana County, Kenya. Association of Providers of AIDS Care. 2019;1(4):1–4. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Carmone A, Bomai K, Bongi W, Frank T, Dalepa H, Lofia B, et al. Partner testing, linkage to care, and HIV Free Survival in a Program to Prevent Mother to Child Transmission of HIV in the highlands of Pupa New Guinea. Global Health Action. 2014;(27)7. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20.Kalembo F, Zgambo M, Mulanga A, Yukai D, Ahmanrd N. Association between male partner involvement and the uptake of PMTCT interventions in Mwanza District, Malawi: A retrospective cohort study. PLoS One. 2013; 8(6): e66517. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21.Adeniyi Vo, Thomson E, Goon D, Ajayi I. Disclosure, stigma if HIV positive child and access to Early Infant Diagnosis in the rural communities of Tambo District, South Africa: A qualitative exploration of maternal perspective. BMC Pediatrics. 2015;15(98). [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22.Yah CS, Tambo E. Why is mother-to-child transmission (MTCT) of HIV a continual threat to newborns in sub-Saharan Africa (sSA). Journal of Infection and Public Health. 2019;12(2019):213–222. doi: 10.1016/j.jiph.2018.10.008 [DOI] [PubMed] [Google Scholar]
  • 23.Tshweneagae G, Oss V, Mgutshini T. Disclosure of HIV status to sexual partners by people living with HIV. Curationis. 2015;38(1): E1–6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Imbaya C, Odhiambo-Otieno G, Okello AB. Socio-demographic characteristics, Antenatal Clinic attendance, and PMTCT knowledge of postnatal HIV+ women at an urban public health facility in Nairobi. East and Central Africa Medical Journal. 2014; 1(1):33–40. [Google Scholar]
  • 25.Thomson K, Telfer B, Opondo AP, Munge J, Ngunga M, Reid A. Navigating the risks of prevention of mother to child transmission (PMTCT) of HIV services in Kibera, Kenya: Barriers to engaging and remaining in care. PLoS ONE. 2018;13 (1): e0191463 doi: 10.1371/journal.pone.0191463 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Matseke MG, Ruiter RAC, Rodriguez VJ, Peltzer K, Setswe G, et al. Factors Associated with Male Partner Involvement in Programs for the Prevention of Mother-to-Child Transmission of HIV in Rural South Africa. International Journal of Environmental Research and Public Health. 2017; 14(11):1333. doi: 10.3390/ijerph14111333 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Nabwera H.M, Jepkosgei J, Muraya KW, Hassan AS, Molyneux CS, Ali R, et al. What influences feeding decisions for HIV-exposed infants in rural Kenya? International Breastfeeding Journal. 2017;12(31). doi: 10.1186/s13006-017-0125-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Essajee S, Bhairavabhotla R, Penazzato M, Kiragu K, Jani I, Carmona S, et al. Scale-up of Early Infant HIV Diagnosis and Improving Access to Pediatric HIV Care in Global Plan Countries: Past and Future Perspectives. Journal of Acquired Immune Deficiency Syndrome. 2017;75(1): S51–S58. [DOI] [PubMed] [Google Scholar]
  • 29.Mondi S, Broyles L, Montandon M, Ltoh M, Ochanda B, Langat A, et al. Beyond Early Infant Diagnosis: Changing the Approach to HIV Exposed Infants. Journal of Acquired Immune Deficiency Syndrome. 2018;78(2): S107–S114. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Anirban C, Sangeeta T, Robert G, Ndapewa H, Sok P, Charles K, et al. Implementing services for Early Infant Diagnosis (EID) of HIV: a comparative descriptive analysis of national programs in four countries. BioMed Central Public Health. 2011; 11:553. doi: 10.1186/1471-2458-11-553 [DOI] [PMC free article] [PubMed] [Google Scholar]

Decision Letter 0

Thomas Phillips

9 Jun 2022

PONE-D-21-18949Prognostic factors influencing survival among infants enrolled for HIV early infant diagnosis services in selected hospitals in Nairobi County, KenyaPLOS ONE

Dear Dr. Kiilu,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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The reviewers have raised a number of concerns that need attention. They request additional information on methodological aspects of the study and alterations to your reporting system.

Please submit your revised manuscript by Jul 23 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

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We look forward to receiving your revised manuscript.

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Thomas Phillips, PhD

Staff Editor

PLOS ONE

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My sincere gratitude goes out to all the healthcare facility in-charges and the study participants for their support and cooperation, and to all those who assisted in any way during the data collection and analysis period. Special appreciation goes to Prof. Achia (CDC, KEMRI). I also wish to extend my gratitude to the National Research Fund (NRF) and Jomo Kenyatta University of Science and Technology (JKUAT) for funding this study."

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Reviewers' comments:

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Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This is an interesting manuscript by Kiilu et al. The team investigate prognostic factors influencing survival in infants enrolled for HIV early infant diagnostic service. The major factors that were identified were young maternal age & a recent HIV diagnosis. Over all this study was well written and the statistics performed to an appropriately high standard.

Points to address:

There were some typos in the document, so need further proof reading.

I would prefer that when the authors are discussing other groups work, then they say ...et al (instead or having a reference in the middle of a sentence). E.g. p19 "a finding corroborated by [2] whereby male partners who..." should be "a finding corroborated by Alusio et al [2] whereby male partners who..."

Please state over what time period the house hold income of Ksh. <6000 is for. Is it per annum?

The acknowledgements section needs to be re-written. E.g. Include study participants, health care providers and funders. It is strange to acknowledge people that are authors in the study. It is written in a way that I would expect to be in a PhD thesis, not a scientific manuscript.

**********

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Reviewer #1: No

**********

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PLoS One. 2023 Oct 4;18(10):e0292427. doi: 10.1371/journal.pone.0292427.r002

Author response to Decision Letter 0


9 Aug 2022

Thank you very much for taking time to review my manuscript and for giving good feedback that will help to improve clarity of content shared and expand knowledge in the field of HIV/AIDS.

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 1

Simon Timothy Abrams

16 Nov 2022

PONE-D-21-18949R1Prognostic factors influencing survival among infants enrolled for HIV early infant diagnosis services in selected hospitals in Nairobi County, Kenya

PLOS ONE

Dear Dr. Elizabeth Mueke Kiilu,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please carefully address the extensive and detailed reviewers’ comments, reorganise the manuscript as per journal requirements and update the references. One of the reviewers has kindly offered to assist with revising the manuscript. Please contact me should you seek this assistance.

Please submit your revised manuscript by 15th Feb 2023. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Dr Simon Timothy Abrams

Guest Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #2: (No Response)

Reviewer #3: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #2: No

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #2: No

Reviewer #3: I Don't Know

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #2: No

Reviewer #3: No

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #2: No

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #2: The authors present a longitudinal analysis of HIV infection in children between 2-6 weeks and 12 months old who are HIV-exposed in Nairobi, Kenya. The manuscript is not suitable for publication in its present form. I hope the suggestions below will strengthen any future submissions. Please see attached word document.

Reviewer #3: Greetings - Well done on your draft manuscript - I have reviewed your paper in detail and provided a document attached with comments. I know it'll look overwhelming at first, but please do work through them. Your paper is promising and just needs some more work to get it to the point of publication. Once you make the changes requested, this paper could be great!

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #2: No

Reviewer #3: Yes: Beth A Tippett Barr

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachment

Submitted filename: PONE-D-21-18949R1.docx

Attachment

Submitted filename: PLosONE_KE_EID_Review_oct2022.docx

PLoS One. 2023 Oct 4;18(10):e0292427. doi: 10.1371/journal.pone.0292427.r004

Author response to Decision Letter 1


17 Apr 2023

Thank you for the rigorous review to enrich the manuscript. The manuscript has been duly updated as per the reviewers' comments.

Attachment

Submitted filename: Response to Reviewers..pdf

Decision Letter 2

Simon Timothy Abrams

14 Jun 2023

PONE-D-21-18949R2Prognostic factors influencing HIV-Freesurvival among infants enrolled for HIVearly infant diagnosis services in selected hospitals in Nairobi County, KenyaPLOS ONE

Dear Dr. Kiilu,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Jul 29 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Dr Simon Timothy Abrams

Guest Editor

PLOS ONE

Additional Editor Comments:

This is a much improved manuscript. However, some of the previous reviewer's comments were not addressed in this revised submission. Please ensure these are address in the next revision. It is suggested that the discussion section be shortened. In addition, please ensure that both a tracked changes and a clean copy or the manuscript are uploaded following this round of revisions.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #2: (No Response)

Reviewer #3: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #2: Partly

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #2: No

Reviewer #3: No

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #2: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #2: The authors present a longitudinal analysis of HIV infection in children between 2-6 weeks and 12 months old who are HIV-exposed in Nairobi, Kenya. The manuscript is much improved, thank you. However, not all earlier comments have been addressed and the document still requires further revisions. I have retained the comments that were not addressed from my initial review.

General points

1. No clean (i.e., not tracked) copy was included in the submission. This has made it difficult to read.

2. Font size for headings is still inconsistent.

3. In the HIV field, there is a move towards using more patient-centred language and avoiding the term mother-to-child-transmission (use ‘Vertical Transmission’). This has not been addressed in the Abstract or Manuscript.

4. Breastfeeding is an important variable when considering vertical transmission of HIV after the first couple of weeks. I don’t see reference to breast-feeding.

5. Infant post-exposure prophylaxis is also an important variable in vertical HIV transmission and is not mentioned, not even the guidelines.

Specific points

Abstract: No need to include IRB details in the abstract.

In last line of the Results you have deleted “years” which needs to be put back for the sentence to make sense.

Conclusion is poorly written with a phrase repeated twice in the same sentence. This is probably because a clean (i.e., no tracked) document wasn’t ready through.

Introduction: Literature has been updated, thank you.

Methods: You should include the vertical transmission guidelines and antenatal and postnatal care guidelines for context. What did mothers’ receive? Was there any post-exposure prophylaxis for infants? This needs to be taken into account in your models.

If you summarise the Vertical Transmission of HIV Prevention and EID guidelines it would be clear that there was NO BIRTH testing at the time of the study. This is an important point.

The sample size calculation is still unclear; what proportion of vertical transmission was expected and why? The study was powered at 0.8 /80% to detect what? I still cannot determine whether the sample size is appropriate for the information presented.

Results: You need to report uncertainty ranges around the central tendency. This means and inter-quartile range around medians and SD or 95% CI around means.

Table 2: there is not enough information about the variables. E.g., age in completed years? To what age does the chi apply? The same applies to almost ALL these variables. Is there any reason why the actual numbers aren’t included? Can’t these data, not the chi values but the p-values, be included in Table1?

Cox PH – should be spelled out.

Is the old Table 5 on hypotheses deleted or not? Only the heading is deleted.

Death and transfer out are competing events. i.e., you cannot become HIV infected if you die or if you transfer out and are not tested. You need to apply a statistical method to account for these competing events.

Discussion: could be edited for length.

Limitations: Limitations not mentioned include:

1. Recruitment at 2 -6 weeks (there may be a good reason for this, but it has not been explained as the VTP guidelines in place at the time are not described in the Methods). We know that infants infected in utero can have rapid progression of HIV and die before 6 weeks old. Recruitment at 6 weeks will have missed infants with in utero HIV infection who died, under-estimating VT.

2. Breastfeeding – no data are presented. This should be noted as an important variable in VT, especially post-natal VT. What are BF rates in the region?

3. Infant post-exposure prophylaxis – no data are presented. As above, this is an important variable in VT.

Reviewer #3: Hello again - you've done a great job with the revisions!

I just have one question and two comments:

1. In the results, you state that 'infant death was not a competing risk factor' - but this doesn't make sense to me, as death is an outcome (failure) in your analysis. Please confirm with a statistician that this analysis was adequately rigorous. And please make sure you define what the outcomes are in your methods section - in other papers in the region, any outcome other than a final HIV-negative test is considered *not* to be HIV-free survival - be very clear how you count 1. Death, 2. Loss-to-follow-up, and 3. HIV infection - ie. Are they all included as failures in your survival analysis?

2. The last sentence of your abstract introduction paragraph needs to move up to become the second sentence - the flow will be better then.

3. Your discussion is very long - consider reducing it by a few paragraphs and focusing on the 2-3 *key* messages you want the reader to remember. Then make sure your conclusion reiterates those main points.

Nearly there! Great job!

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

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Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #2: No

Reviewer #3: Yes: Beth A Tippett Barr

**********

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Decision Letter 3

Simon Timothy Abrams

25 Jul 2023

PONE-D-21-18949R3Prognostic factors influencing HIV-Free survival among infants enrolled for HIV early infant diagnosis services in selected hospitals in Nairobi County, Kenya.PLOS ONE

Dear Dr. Elizabeth Mueke Kiilu,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Sep 08 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Simon Timothy Abrams

Guest Editor

PLOS ONE

Additional Editor Comments:

This submission is much improved. In addition to addressing the specific comments, could the authors please consult a statistician to ensure that the Cox regression was performed correctly.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #3: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #3: Partly

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #3: No

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #3: No

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #3: Thank you for your very hard work in this round of revisions. While this paper is coming along really well, I have noted a couple of areas which need some extra attention from a statistician. Comments have been inserted in the pdf file attached. Please do not be discouraged - you're nearly there. I look forward to reviewing your next version.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #3: Yes: Beth A Tippett Barr

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachment

Submitted filename: PONE-D-21-18949_R3_reviewer_25jul_btb.pdf

Decision Letter 4

Simon Timothy Abrams

21 Sep 2023

Prognostic factors influencing HIV-Free survival among infants enrolled for HIV early infant diagnosis services in selected hospitals in Nairobi County, Kenya.

PONE-D-21-18949R4

Dear Dr. Elizabeth Mueke Kiilu,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Simon Timothy Abrams

Guest Editor

PLOS ONE

Additional Editor Comments (optional):

The authors have reworked this manuscript multiple times, with great improvement, and it is now suitable for publication.

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #3: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #3: I Don't Know

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #3: Well done with your persistence and efforts during repeat revisions. This manuscript has come together nicely.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #3: Yes: Beth A. Tippett Barr

**********

Acceptance letter

Simon Timothy Abrams

25 Sep 2023

PONE-D-21-18949R4

Prognostic factors influencing HIV-Free survival among infants enrolled for HIV early infant diagnosis services in selected hospitals in Nairobi County, Kenya.

Dear Dr. Kiilu:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Simon Timothy Abrams

Guest Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Questionnaires

    (PDF)

    S1 Dataset. Minimal underlying dataset.

    (XLSX)

    Attachment

    Submitted filename: Response to Reviewers.docx

    Attachment

    Submitted filename: PONE-D-21-18949R1.docx

    Attachment

    Submitted filename: PLosONE_KE_EID_Review_oct2022.docx

    Attachment

    Submitted filename: Response to Reviewers..pdf

    Attachment

    Submitted filename: Response to Reviewers.docx

    Attachment

    Submitted filename: PONE-D-21-18949_R3_reviewer_25jul_btb.pdf

    Attachment

    Submitted filename: Response to Reviewers.docx

    Data Availability Statement

    The minimal underlying data set had been provided as part of supporting files for reviewer access. The data set has been de-identified, however, the data set remains part of the Government of Kenya, Ministry of Health property, and permission to share it publicly needs to be sought from the director general using the following contacts: Dr. Patrick Amoth Ag. Director General for Health at Ministry of Health Ministry of Health, Afya House, Cathedral Road, P.O. Box:30016–00100, Nairobi, Kenya. Email: dghealth2019@gmail.com.


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