Table 1.
Summary of NGS data
| Sample ID/PER | 01 | 02 | 03–1 | 04A | 04B | 05 | 08 | 09 | 09–1 | 09B | 10 | 11 | 22 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sample source | petrosa | tooth | petrosa | petrosa | petrosa | tooth | tooth | petrosa | petrosa | petrosa | petrosa | petrosa | petrosa |
| Endogenous DNA | 27.7% | 20% | 20.2% | 13% | 49.5% | 58.4% | 64% | 12% | 9.4% | 23.3% | 14.6% | 74.3% | 82.2% |
| Total no of reads(M.) | 222.7 | 49.8 | 366.7 | 67.8 | 112.4 | 44.5 | 190.3 | 1647.0 | 182.7 | 653.0 | 33.0 | 70.7 | 30.7 |
| No of unique reads (M.) | 50.8 | 9.1 | 40.0 | 28.2 | 56.8 | 26.6 | 23.4 | 128.5 | 42.2 | 89.8 | 22.2 | 54.9 | 24.4 |
| Avg. genome coverage (fold) | 1.11 | 0.16 | 0.71 | 0.65 | 1.33 | 0.56 | 0.74 | 3.25 | 1.18 | 1.92 | 0.39 | 1.29 | 0.63 |
| Avg. X-chr. coverage | 0.61 | 0.09 | 0.39 | 0.35 | 0.71 | 0.57 | 0.4 | 1.71 | 1.21 | 1.96 | 0.22 | 0.69 | 0.64 |
| Avg. Y-chr. coverage | 0.50 | 0.07 | 0.28 | 0.26 | 0.53 | 0.02 | 0.29 | 1.02 | 0.04 | 0.06 | 0.13 | 0.44 | 0.02 |
| Mitochondrial bps covered >5x | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 99% | 100% | 100% |
| Schmutzi mitochondrial | 1% | 2% | 1% | 1% | 8% | 1% | 1% | 1% | 1% | 1% | 1% | 1% | 0% |
| contamination ANGSD X contamination | 0.7% | 5.6% | 0.7% | 1.1% | 0.5% | N/A | 0.9% | 0.6% | N/A | N/A | 0.9% | 0.4% | N/A |