REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
rabbit anti-cFOS | Synaptic Systems | Cat#226003; RRID: 2231974 |
goat anti-rabbit Alexa Fluor 488 | Thermo Fisher | Cat#A11034; RRID: AB_2576217 |
rabbit anti-DsRed | Takara Bio Clontech | Cat#632496; RRID: AB_10013483 |
Bacterial and virus strains | ||
AAV2-flex-taCasp3-TEVp | UNC Vector Core (Depositor: Nirao Shah & Jim Wells) Yang et al.58 |
|
AAV8-hSyn-hM3D(Gq)-mCherry | Addgene (Depositor: Brian Roth) Krashes et al.57 |
Addgene viral prep Cat#50474-AAV8 |
AAV2-FLEX-tdTomato | Addgene (Depositor: Edward Boyden) | Addgene plasmid Cat#28306 |
AAV8-Syn-FLEX-Mac-GFP | Addgene (Depositor: Edward Boyden) | Addgene plasmid Cat#58852 |
Chemicals, peptides, and recombinant proteins | ||
Clozapine-n-oxide (CNO) | Millipore Sigma | Cat#0832 |
Giemsa | Fisher | Cat#G146-10 |
DIG RNA labeling kit | Roche | SKU#11277073910 |
Fluorescein RNA Labeling Mix | Roche | SKU#11685619910 |
RNA Clean & Concentrator | Zymo Research | Cat#R1017 |
ZymoPURE II Plasmid Midiprep kit | Zymo Research | Cat#D4201 |
Zymo DNA Clean & Concentrator | Zymo Research | Cat#D4033 |
Blocking Reagent | Roche | Cat#11096176001 |
TSA Plus Cyanine 5 System | Akoya Biosciences | Cat#NEL745001KT |
Rneasy Micro kit | Qiagen | Cat#74004 |
Deposited data | ||
RNA seq data from neurons FACS isolated from mouse tuberal hypothalamus neurons | NCI Gene Expression Omnibus (GEO) | GSE224254 |
GTEx | Broad Institute | Version 8 |
Molecular Signatures Database | Broad Institute | Human Gene Set: HALLMARK_ESTROGEN_RESPONSE_EARLY |
Datasets for estrogen signaling binning of human data | Github | https://github.com/Leandromvelez/sex-specific-endocrine-signals. |
Experimental models: Organisms/strains | ||
model organism: Sst-Cre: genotype STOCK Ssttm2.1(cre)Zjh/J | The Jackson Laboratory | Strain#013044 |
model organism: Esr1-Cre: genotype B6N.129S6(Cg)-Esr1tm1.1(cre)And/J | The Jackson Laboratory | Strain#017911 |
Recombinant DNA | ||
cDNA for Sst (bases 7-550 for transcript variant 1, bases 317-860 for transcript variant 2) | Allen Brain Atlas | Probe: RP_Baylor_103041 |
TA Cloning™ Kit, with pCR™2.1 Vector and One Shot™ TOP10F' Chemically Competent E. coli | Invitrogen | Cat#K203001 |
Software and algorithms | ||
VitalView Software | Starr Life Sciences | version 5.1 |
lme() function (nlme package, version 3.1-157) | r-project.org | R version 4.2.1 |
t_test() function (rstatix package, version 0.7.0) | r-project.org | R version 4.2.1 |
Code for volcano plot | Github |
http://github.com/jevanveen/ratplots R function: deseq_volcano_plot_gs() |
Analysis pipleline for estrogen signaling binning of human data and cross-tissue correlations with mouse orthologues | Github | https://github.com/Leandromvelez/sex-specific-endocrine-signals |
Kallisto | Pachter Lab Bray et al.114 |
version 0.46.2 |
Deseq2 | Galaxy | Version 2.11.40.6+galaxy1 |
CellProfiler | Broad Institute | 4.2.1 |