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. 2023 Sep 14;26(10):107918. doi: 10.1016/j.isci.2023.107918
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

rabbit anti-cFOS Synaptic Systems Cat#226003; RRID: 2231974
goat anti-rabbit Alexa Fluor 488 Thermo Fisher Cat#A11034; RRID: AB_2576217
rabbit anti-DsRed Takara Bio Clontech Cat#632496; RRID: AB_10013483

Bacterial and virus strains

AAV2-flex-taCasp3-TEVp UNC Vector Core (Depositor: Nirao Shah & Jim Wells)

Yang et al.58
AAV8-hSyn-hM3D(Gq)-mCherry Addgene (Depositor: Brian Roth)

Krashes et al.57
Addgene viral prep Cat#50474-AAV8
AAV2-FLEX-tdTomato Addgene (Depositor: Edward Boyden) Addgene plasmid Cat#28306
AAV8-Syn-FLEX-Mac-GFP Addgene (Depositor: Edward Boyden) Addgene plasmid Cat#58852

Chemicals, peptides, and recombinant proteins

Clozapine-n-oxide (CNO) Millipore Sigma Cat#0832
Giemsa Fisher Cat#G146-10
DIG RNA labeling kit Roche SKU#11277073910
Fluorescein RNA Labeling Mix Roche SKU#11685619910
RNA Clean & Concentrator Zymo Research Cat#R1017
ZymoPURE II Plasmid Midiprep kit Zymo Research Cat#D4201
Zymo DNA Clean & Concentrator Zymo Research Cat#D4033
Blocking Reagent Roche Cat#11096176001
TSA Plus Cyanine 5 System Akoya Biosciences Cat#NEL745001KT
Rneasy Micro kit Qiagen Cat#74004

Deposited data

RNA seq data from neurons FACS isolated from mouse tuberal hypothalamus neurons NCI Gene Expression Omnibus (GEO) GSE224254
GTEx Broad Institute Version 8
Molecular Signatures Database Broad Institute Human Gene Set: HALLMARK_ESTROGEN_RESPONSE_EARLY
Datasets for estrogen signaling binning of human data Github https://github.com/Leandromvelez/sex-specific-endocrine-signals.

Experimental models: Organisms/strains

model organism: Sst-Cre: genotype STOCK Ssttm2.1(cre)Zjh/J The Jackson Laboratory Strain#013044
model organism: Esr1-Cre: genotype B6N.129S6(Cg)-Esr1tm1.1(cre)And/J The Jackson Laboratory Strain#017911

Recombinant DNA

cDNA for Sst (bases 7-550 for transcript variant 1, bases 317-860 for transcript variant 2) Allen Brain Atlas Probe: RP_Baylor_103041
TA Cloning™ Kit, with pCR™2.1 Vector and One Shot™ TOP10F' Chemically Competent E. coli Invitrogen Cat#K203001

Software and algorithms

VitalView Software Starr Life Sciences version 5.1
lme() function (nlme package, version 3.1-157) r-project.org R version 4.2.1
t_test() function (rstatix package, version 0.7.0) r-project.org R version 4.2.1
Code for volcano plot Github http://github.com/jevanveen/ratplots
R function: deseq_volcano_plot_gs()
Analysis pipleline for estrogen signaling binning of human data and cross-tissue correlations with mouse orthologues Github https://github.com/Leandromvelez/sex-specific-endocrine-signals
Kallisto Pachter Lab

Bray et al.114
version 0.46.2
Deseq2 Galaxy Version 2.11.40.6+galaxy1
CellProfiler Broad Institute 4.2.1