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. 2023 Oct 19;18(10):e0293302. doi: 10.1371/journal.pone.0293302

A retrospective cohort study of prescribing outcomes in outpatients treated with nirmatrelvir–Ritonavir for COVID-19 in an interdisciplinary community clinic

Valerie Leung 1, Suzanne Gill 1, Andrea Llanes 1, Armughan Khawaja 1, Amanda Stagg 1, Janine McCready 1, Mariana Jacubovich 1, Grace Ho 1, Jeff Powis 1, Christopher Kandel 1,2,*
Editor: Victor Daniel Miron3
PMCID: PMC10586632  PMID: 37856531

Abstract

Background

Large observational studies have demonstrated the real-world effectiveness of nirmatrelvir–ritonavir in preventing severe COVID-19 in higher risk individuals, but have provided limited information on other aspects of nirmatrelvir-ritonavir use. Our objective was to evaluate prescribing outcomes such as the prevalence of drug-drug interactions (DDI), adverse drug events (ADE) and treatment adherence in an outpatient community clinic setting.

Methods

We conducted a single-centre retrospective cohort study of adult outpatients prescribed nirmatrelvir–ritonavir in our community COVID-19 assessment clinic in Toronto, Ontario between March 3 and September 20, 2022. We performed a descriptive analysis of the patient population, DDIs, DDI interventions, treatment adherence, ADEs and clinical outcomes of patients prescribed nirmatrelvir–ritonavir.

Results

There were 637 individuals prescribed nirmatrelvir–ritonavir during the study period. The median age was 70, the median number of risk factors for severe disease were 2, 45% were immunocompromised and 82% had received 3 or more COVID-19 vaccine doses. 95% (542/572) completed the 5-day course of therapy with 68% (388/572) having complete symptom resolution by 28-day. Eleven percent (60/572) experienced recurrent symptoms following the completion of nirmatrelvir–ritonavir. Over 70% had one or more clinically significant DDIs requiring mitigation and 62% of patients experienced at least one ADE, which was most commonly dysgeusia or gastrointestinal-related. Ninety-five percent (542/572) of patients completed therapy as prescribed. Overall, hospitalization within 28 days was 3.3% with 1.2% attributed to COVID-19 and there were no deaths.

Interpretation

Nirmatrelvir–ritonavir was associated with a high prevalence of clinically significant DDIs, which required mitigation strategies and a high frequency of mild ADEs. Collaborative assessment to address medication alterations resulted in high treatment adherence.

Introduction

Nirmatrelvir–ritonavir reduces the risk of hospitalization among unvaccinated individuals with COVID-19 [1]. Large observational studies using administrative databases have similarly demonstrated reductions in hospitalization with nirmatrelvir–ritonavir in vaccinated individuals, however these lack detailed data on adverse drug events (ADE) including those that do not require medical attention and potentially rare effects such as liver toxicity, medication adherence and mitigation strategies for drug-drug interactions (DDI) [25]. In addition, these studies are prone to misclassification when determining reason for hospitalization [6]. To complement existing studies and address the potential harms of nirmatrelvir–ritonavir detailed, individual-level clinical information is necessary.

In Ontario, Canada nirmatrelvir–ritonavir is funded for outpatients based on clinical criteria determined by the Ministry of Health, including individuals who were; immunocompromised, older than age 70, age 60 and older with fewer than 3 vaccine doses, age 18 or older with less than 3 COVID-19 vaccine doses and one or more risk conditions (obesity, diabetes, heart disease, hypertension, congestive heart failure, chronic respiratory disease including cystic fibrosis, cerebral palsy, intellectual or developmental disability, sickle cell disease, moderate or severe kidney disease, moderate or severe liver disease and pregnancy) [7]. Third doses of COVID-19 vaccines were first available in August 2021 to select vulnerable populations, expanded in September 2021 to individuals at highest risk of severe illness before being available to all adults in December 2021 [811]. The Ontario COVID-19 Science Advisory Table was the main source of clinical guidance on the use of COVID-19 therapeutics including dosing and other clinical aspects such as how to manage potential drug-drug interactions [12]. The primary objective of this study is to describe and quantify potential drug-drug interactions (DDI) and the associated mitigation strategies employed. The secondary objectives are to characterize treatment adherence, prevalence of adverse events and describe clinical outcomes of patients who received nirmatrelvir–ritonavir.

Methods

Population and setting

We included consecutive adults (age >18) who were outpatients prescribed nirmatrelvir–ritonavir between March 3 and September 20, 2022 at a community COVID-19 Clinical Assessment Centre (CAC). March 2022 was when CACs were able to provide nirmatrelvir-ritonavir and a 6-month timeframe was selected in order to capture sufficient information for meaningful analysis. The CAC clinic was operated at Michael Garron Hospital (MGH), a large community teaching hospital in Toronto, Ontario. The CAC utilized a centralized, collaborative interdisciplinary model in which all individuals presenting to the CAC, Emergency Department (ED) or a Community Outreach Centre (COC) with a positive COVID-19 molecular test were evaluated in-person or virtually by a healthcare provider.

Individuals meeting the provincial clinical criteria for treatment with nirmatrelvir-ritonavir who did not have unavoidable contraindications were evaluated by a pharmacist who performed a best-possible medication history, assessed DDIs, confirmed dosing based on renal function, counseled and dispensed the medication to the patient or arranged for home delivery. For patients without a creatinine in the previous 90 days, renal function was assessed before nirmatrelvir-ritonavir was provided. When assessing for potential DDIs with nirmatrelvir/ritonavir, pharmacists consulted a minimum of 2 standard references (i.e. Liverpool COVID-19 and one other standard reference) [1316]. If no interaction was identified after checking with 2 references, pharmacists were encouraged to check a third reference for confirmation if there was uncertainty. Due to lack of data and as a precaution, pharmacists advised patients to hold all non-essential vitamins, minerals and natural health products while on nirmatrelvir/ritonavir. Mitigation strategies were determined in collaboration with the prescriber, communicated to the patient and documented in the electronic patient record using a standardized template. Where changes to comedications were required, patients were counselled to either hold or adjust the comediation for 7 days and then received a follow-up phone call from the pharmacist a week later reminding them to resume their usual regimen [13].

Patients were followed virtually during treatment (or until clinical resolution) by an interdisciplinary team of nurses overseen by a physician using either a remote monitoring application (Vivify Health®) and/or by telephone calls. Patients were also followed-up virtually at least 28 days following completion of therapy by a member of the study team. Residents of long-term care homes and patients that received nirmtrelvir-ritonavir while admitted as inpatients were excluded as these individuals could not be followed by the CAC. We adhered to the Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) reporting guideline [17].

Data sources & definitions

Risk factors for severe disease and the definition of immunocompromised individuals were consistent with the Ontario Science Table guidelines; immunocompromised individuals included those receiving immunosuppressive agents (e.g. for treatment of solid tumors and hematologic malignancies), those with moderate or severe primary immunodeficiency and individuals with advanced or untreated HIV infection [13]. Clinical information was abstracted from standardized templates in the electronic medical record (Cerner Powerchart). Information on adherence, ADE, and the clinical trajectory were self-reported by patients at the 28-day assessment. Patient characteristics and clinical outcomes (symptom resolution, healthcare utilization and death) were abstracted by AL and AS and prescribing outcomes (prevalence and severity of DDI, mitigation strategies, treatment adherence, ADE) were abstracted by 2 pharmacists (VL, SG) from June 6, 2022 until December 12, 2022. Data were reviewed by the study team for face validity prior to analysis. Hospitalizations and emergency department (ED) visits were reviewed by 2 physicians (JP, CK) to determine whether they were related to progression of COVID-19. When consensus could not be achieved a third physician (JM) was consulted. Authors had access to identifiable information during data collection. A DDI was defined as the concurrent use of co-medication(s) potentially resulting in decreased effectiveness and/or increased ADE from nirmatrelvir–ritonavir or the co-medication(s). Potential DDIs identified were assigned by VL and SG to a severity classification based on standard references and previous studies (i.e. level 1 –contraindicated, level 2 –clinically significant requiring mitigation, and level 3 –does not typically require mitigation) [1316, 18, 19] (S1 Table). Since patients were advised to stop all non-essential vitamins, minerals and supplements while on treatment, these were excluded as potential DDIs.

Statistical analysis

The population was described using proportions for categorical variables and medians with interquartile range for continuous variables. The DDIs were categorized by severity and broad medication categories. Data were analyzed using Microsoft Excel 2013 and R version 4.2.0.

Ethics approval

This study was approved by the MGH Research Ethics Board with a waiver for informed consent as this was a retrospective cohort study.

Results

Overall, 637 individuals were prescribed nirmatrelvir–ritonavir, with 8 patients receiving a second course for a subsequent infection. The median age was 70 (IQR 51–78) and 56% (356/637) were females. The median number of risk factors for severe disease was 2, most commonly age 70 or older (52%, 332/637) and a cardiovascular condition (50%, 316/637); 45% (285/637) were immunocompromised (Table 1). Very few patients were unvaccinated (8%, 48/637) as most had received 3 or more vaccine doses (82%, 523/637). The median time from symptom onset to treatment was 2 days (IQR 1–3) with 82% (527/645) starting treatment within 3 days. Dose reduction for renal dysfunction was required for 29% (185/645) of individuals (Table 1). Those who received a second course were younger, (median age 47) and 88% (7/8) were immunocompromised; the median number of days between courses was 110.5 (IQR: 88–128).

Table 1. Characteristics of study population.

Patient Characteristic % (n)
N = 637
Age, years
 Median (IQR) 70 (51–78)
 < 20 y 0.5% (3)
 20–39 y 13.7% (87)
 40–59 y 19.6% (125)
 60–69 y 14.1% (90)
 70–79 y 30.8% (196)
 > 80 y 21.4% (136)
Sex, female 56.4% (356)
Number of home medications1, Median (IQR) 7 (5 to 10)
Risk Factors for Severe COVID-192,3
 Number of risk factors, Median (IQR) 2 (0 to 3)
 Age > 70 52.1% (332)
 Heart disease, Hypertension, Congestive Heart Failure 49.6% (316)
 Kidney disease (eGFR, 60 mL/min) 27.3% (174)
 Chronic respiratory disease 22.8% (145)
 Diabetes 18.7% (119)
 Obesity (BMI >30 kg/m2) 13.8% (88)
 Intellectual & developmental disabilities 4.2% (27)
 Liver disease (e.g., Child Pugh Class B or C cirrhosis) 0.3% (2)
 Cerebral palsy 0% (0)
 Sickle cell disease 0% (0)
Immunocompromised or Immunosuppressed Individuals4 44.7% (285)
Pregnancy 0.002% (1)
Vaccine Doses
 0 7.5% (48)
 1 1.4% (9)
 2 8.5% (54)
 3 37.0% (236)
 4 44.0% (280)
 5 1.6% (10)
Time from symptom onset to start of therapy5, d
 Median (IQR) 2 (1 to 3)
 3 days or less 81.7% (527)
 4–5 days 18.3% (118)
Initial Assessment5
 In-person 77.0% (497)
 Virtual 23.0% (148)
Completed 28 day Follow-up Assessment5 88.7% (572)

1Home medications includes prescription medications and non-prescription medications as well over the counter products as identified by Best Possible Medication History conducted at the time of Nirmatrelvir–ritonavir prescribing

2as per Ontario COVID-19 Science Advisory Table criteria [10]

3other than being immunocompromised

4Based on Ontario COVID-19 Science Advisory Table definition: includes individuals receiving immunosuppressive agents, those with moderate or severe primary immunodeficiency and individuals with advanced or untreated HIV infection [10]

5based on N = 645 individuals as 8 received a second course for a subsequent infection.

The median number of concurrent medications was 7 (IQR: 5–10) with 70% (450/645) of patients having at least 1 DDI, increasing to 82% (273/332) for older adults 70 years and older (Table 2). Of 840 DDIs, 95% (795/840) were categorized as level 2 clinically significant requiring intervention. The most common interacting co-medications were cardiovascular medications (55%, 460/840) with the vast majority prescribed for management of hypercholesterolemia, hypertension and benign prostatic hyperplasia (49% 411/840). The next most common categories were central nervous system (19%, 155/840) and oral antithrombotic agents including 27 direct oral anticoagulants (5%, 43/840) (S2 Table). Out of 829 mitigation strategies, the co-medication was held in 56% (467/829) with the majority of these being HMG CoA reductase inhibitors (246/467), dose adjusted in 22% (179/840) and an alternative drug started in 8% (64/840) of cases.

Table 2. Prescribing & clinical outcomes.

Outcome % (n)
N = 645
Dose reduction for renal dysfunction 28.7% (185)
Prevalence of DDIs (n = 840)
 Cardiovascular drugs 54.8% (460)
  Lipid modifying agents, 29.3% (246)
  Calcium Channel Blockers, 13.9% (117)
  Alpha-blockers, 5.7% (48)
  Phosphodiesterase Type 5 Inhibitors, 2.0% (17)
  Other 3.8% (32)
 Central Nervous System 18.5% (155)
  Benzodiazepine receptor agonist 5.8% (49)
  Antidepressants 4.4% (37)
  Opioids 3.3% (28)
  Antipsychotics 1.7% (14)
  Other CNS agents 3.2% (27)
 Oral antithrombotic agents 5.1% (43)
 Corticosteroid 4.4% (37)
 Gastrointestinal/Urinary agents 2.9% (24)
 Immunosuppressants 2.9% (24)
 Antihistamines 2.5% (21)
 Hormones 2.4% (20)
 Autonomic agents 2.5% (21)
 Antineoplastic agents 2.0% (17)
 Other 2.1% (18)
DDI Severity
 Level 1 (Contraindicated) 0.12% (1)1
 Level 2 (Clinically Significant) 94.6% (795)
 Level 3 (Minor) 5.2% (44)
Patients with 1 or more DDI
 Level 1 or 2 68.8% (444)
 Any Severity 70.1% (450)
Patients ≥ 70 years of age with 1 or more DDI2
 Level 1 or 2 81.0% (269)
 Any Severity 82.2% (273)
Mitigation Strategies (n = 829)
 Co-medication held 56.3% (467)
 Dose of co-medication adjusted 21.6% (179)
 Alternative drug initiated 7.7% (64)
 Co-medication continued with additional monitoring 12.4% (103)
 Other 1.9% (16)
Treatment adherence to 5 day course of therapy3 94.8% (542)
Adverse Events (ADE)3
 Patients reporting ≥1 ADE 61.4% (351)
 Dysgeusia 39.0% (223)
 Diarrhea 22.9% (131)
 Nausea 12.2% (70)
 Vomiting 4.9% (28)
 Acid Reflux 1.2% (7)
 Dyspepsia 1.0% (6)
 Other 6.6% (38)
 ADE resulting in discontinuation of therapy 4.2% (24)
Complete symptom resolution after completion of treatment3 67.8% (388)
Rebound symptoms4 10.5% (60)
Healthcare utilization3
 ED visit 9.4% (54)
 Family MD or walk-in clinic visit 8.2% (47)
 Hospital admission 3.3% (19)
 Progression of symptoms 0.9% (5)
 Adverse event related to therapy 0.3% (2)
 Unrelated to COVID-19/therapy 2.1% (12)
Death 0% (0)

1one level 1 DDI was identified however the co-medication (lorlatinib) is only contraindicated when taken in the last 14 days(10)

2based on N = 332 individuals 70 or older

3based N = 572 individuals that could be reached for 28 day follow-up assessment

4defined as worsening of symptoms ≤7 days after completing treatment

A virtual follow-up assessment was completed for 89% (572/645) of patients; those unable to be reached for follow-up were excluded in analysis of ADE, treatment adherence and clinical outcomes. Those lost to follow-up were younger, but otherwise similar. At follow-up, 62% (351/572) reported one or more ADE potentially related to nirmatrelvir–ritonavir, most commonly dysguesia (39%, 223/572), diarrhea (23%, 131/572) and nausea or vomiting (19%, 98/572). Despite ADEs, 95% (542/572) completed therapy as prescribed and 87% (495/572) stated that they were willing to take nirmatrelvir–ritonavir again in the future if offered (Table 2).

Most patients reported symptom resolution after treatment, however 32% (184/572) experienced lingering symptoms that was most commonly fatigue followed by cough. While 11% (60/572) experienced worsening of symptoms 7 days or less after completing treatment, most patients reported that their rebound symptoms were milder and none were severe enough to require retreatment. Within 28-days, 9% (54/572) visited the ED, 8% (47/572) visited a family physician or walk-in clinic and 3% (19/572) were hospitalized. Of the ED visits that did not require admission, 54% (19/35) were related to COVID-19 symptoms with most presenting within 7 days of starting nirmatrelvir–ritonavir. The other visits were unrelated to COVID-19 and occurred more than 10 days after staring therapy. Only 37% (7/19) of hospital admissions were related to COVID-19; of these, 5 were due to progression of COVID-19 symptoms (including 1 patient with rebound). Two individuals were admitted to hospital after experiencing severe gastrointestinal symptoms leading to impaired oral intake (S3 Table). No deaths occurred.

Discussion

A retrospective cohort study of 637 outpatients prescribed nirmatrelvir–ritonavir when BA.1/2 and BA.4/5 were the prevailing variants found a high prevalence of DDIs that required intervention. Nearly 70% of patients had more than one clinically significant DDI. This increased to 82% in older adults, which is similar to studies using administrative databases which found that 2/3 of older adults had ≥ 1 potential DDI [5, 20]. Almost all DDIs (98.6%) required pharmacist intervention, which likely contributed to the low rate of severe adverse events in our cohort. While a formal time-motion study was not conducted as part of this study, pharmacists typically spent 30–60 minutes per patient performing assessment, counselling and documentation activities. However, patients requiring comedication dosage changes and/or initiation of new medications while on therapy often required more attention especially in instances where changes to compliance packaging were required (i.e. blister packs). Additionally, individuals on immunosuppressive drugs (e.g. sirolimus, tacrolimus) may require therapeutic drug monitoring to guide dose adjustment following nirmatrelvir-ritonavir therapy which requires additional coordination [13].

The high frequency of ADEs (62%) did not translate into discontinuation of therapy as 95% of patients were adherent to therapy. Dysgeusia and diarrhea were most frequent at 39% and 23% respectively, which was much higher than the 6% for dysgeusia, 3% for diarrhea, and 1% for nausea observed in EPIC-HR. The higher rates in this cohort may be due to a combination of our cohort being older, more comorbid and biases related to retrospective data collection when collecting specific ADEs [1, 21]. Nevertheless, while the real-world gastrointestinal ADEs are more prominent than originally reported, they rarely led to severe ADE and hospitalization.

By 28 days following treatment, 32% (184/572) reported persistent COVID-19 symptoms. Studies conducted before the Omicron variant appeared estimated that 10–35% of individuals have symptoms that persist for at least 28 days post COVID-19 infection [22, 23]. While we were unable to perform longer term assessments, the prevalence of lingering symptoms at 28 days appears similar to those seen with long COVID. However, without a comparison group it is not possible to determine whether nirmatrelvir–ritonavir led to a faster resolution of symptoms or a reduction in long COVID. Consistent with other studies, 11% experienced rebound symptoms [2426]. In our study, no patients with rebound were severe enough to require retreatment however, one individual required hospitalization for progression of COVID-19 symptoms.

Overall, 3% of the cohort were hospitalized within 28 days with 1% deemed related to COVID-19 progression and there were no known deaths. A recent population-based cohort study in Ontario found that individuals dispensed nirmatrelvir–ritonavir from a community pharmacy had a rate of hospitalization from COVID-19 or all cause death rate within 30 days of 2.1% as compared to 3.7% for those that did not receive nirmatrelvir–ritonavir, which is higher than that observed in our cohort. It is important to note, however, that >30% of patients in the provincial cohort were long-term care residents, which are at higher risk of COVID-19 progression and were not included in this cohort [5]. Our rate of COVID-19-related hospitalization, however, was higher than that seen in EPIC-HR (1.2% vs 0.8%) likely related to differences in patient populations.

Limitations

A limitation of our study is the lack of a comparison group that would permit a comparison of our collaborative model to alternative models of nirmatrelvir–ritonavir provision. Nevertheless, we believe that the high prevalence of clinically significant DDIs and the required mitigation strategies are generalizable beyond our single centre given the numerous known DDIs associated with nirmatrelvir–ritonavir [20]. We also did not have complete follow-up resulting in potential survivor bias if those experiencing negative outcomes were less able to participate in re-assessment; however, the 11% lost to follow-up were younger and otherwise similar with respect to vaccination status and immunosuppression status. Data on outcomes were predominately determined at 28-day assessment and were self-reported potentially leading to recall bias. A major strength is our collection of detailed clinical information to assess real-world prevalence, severity and mitigation of DDIs, adherence and ADEs not requiring healthcare visits, which reinforces the need for health care providers to perform detailed assessment and management of DDIs for most patients prescribed nirmatrelvir-ritonavir.

Interpretation

A retrospective cohort of 637 patients found that the use of nirmatrelvir–ritonavir is frequently accompanied by clinically significant DDIs that require mitigation. With a multidisciplinary care model, there was excellent adherence and no severe outcomes related to DDIs. Individuals in our study also experienced high rates of ADE, mostly dysgeusia and gastrointestinal, but these were predominantly minor and only 2 individuals were hospitalized. In general, we found that nirmatrelvir-ritonavir is well tolerated; almost all patients completed therapy and most were willing to take the medication again if offered.

As the pandemic continues to evolve, the use of nirmatrelvir-ritonavir has become a mainstay of therapy for outpatient treatment of mild COVID-19 in individuals at high risk of disease progression. The significance of our findings reinforces the importance of managing DDIs for those prescribed nirmatrelvir-ritonavir. Prescribers should be aware of the high real-world prevalence of DDIs and ADEs associated with this therapy and be familiar with mitigation strategies to prevent harm related to DDIs and help support adherence to therapy.

Supporting information

S1 Table. Potential drug-drug interactions (DDI) with nirmatrelvir/ritonavir.

(DOCX)

S2 Table. Prevalence of DDIs.

(DOCX)

S3 Table. Characteristics of patients hospitalized for COVID-19.

(DOCX)

Data Availability

Data cannot be shared publicly because of the requirements of the Michael Garron Hospital Research Ethics Board. Data are available from the the Research Ethics Board (contact via ResearchEthicsBoard@tehn.ca) for researchers who meet the criteria for access to confidential data.

Funding Statement

This project was funded by the TD Community Health Solutions Research Grant and by in-kind contributions from MGH. TD had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

References

Decision Letter 0

Victor Daniel Miron

24 Aug 2023

PONE-D-23-18794A Retrospective Cohort Study of Prescribing Outcomes in outpatients treated with Nirmatrelvir–ritonavir for COVID-19 in an Interdisciplinary Community ClinicPLOS ONE

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Reviewer #1: I thank the authors for sharing their experience using nirmatrelvir/ritonavir in a large cohort of patients. The finding that 70% of patients would experience a drug-drug interaction is alarming. I have a few comments to strengthen the manuscript.

1. I advise the authors to expound further on "how" the management actually took place. Once a DDI is identified and a medication adjusted there needs to be some additional follow up either internally or externally to ensure that the former dose/schedule is re-instated. Who on your team was following through?

2. Were these all consecutive patients meeting criteria? In other words, there were no other patients that were immediately not considered a candidate for NR that were excluded? When dealing with complex drug interactions that require more frequent monitoring there is always a risk that patients may not follow your instructions explicitly. Please expound on patient selection.

3. How long were medications "held" or dose-adjusted? The half-life of ritonavir is short, but the irreversible inhibition can mean that inhibition of CYP 3A4 or other may be for as long as 7-14 days. Were medications held for the duration of NR or for longer?

Reviewer #2: The paper is well written and provides information on drug-drug interactions to nirmatrelvir/ritonavir treatment on a fair number of patients. There are quite a number of DDIs, as has been reported already, most of them clinically significant. There were changes in co-medication, allowing patients to continue treatment, therefore high adherence to treatment was noted in this sample of patients. Moreover, there were no deaths.DDIs with statins were already reported in early 2022 and some protocols have requested discontinuation of statins before the initiation of treatment with nirmatrelvir/ritonavir. Is this something that had been considered?

The tables are quite informative. On table S3, in the supplement, it would it be interesting to provide info on the day treatment was initiated. Had these patients began treatment early or late post symptom initiation and diagnosis? Of course, this is just a few patients so no safe conclusions can be drawn. The study is retrospective, however, the conclusions are relevant and the strengths and weaknesses of the study are well described and acknowledged.

Reviewer #3: I want to thank the authors for this very interesting and well-wirtten paper, which analyze the clinical use of Nirmatrelvir/ritonavir by focusing on identifying and quantifying the DDI and ADE when prescribed as early treatment for COVID-19. The potential burden related to adverse events is well known in the clinical practice; however, very little literature is available on this side. Moreover, the methodology is very straightforward and accurate and limitations correctly outlined.

Some minor comments are needed in my opinion to further improve the quality of the paper.

1. I would specify whether a written informed consent was needed to be signed by participant in order to use data

2. In case of need for dose adjustment according to renal function, was the decision based on patient history (i.e known history of renal failure) or was creatinin assessed ad hoc?

3. A proper assessment of potential DDI is of outmost importance to increase adherence and therefore ensure optimal efficacy. I would consider to add a couple of sentences in the discussion on the added value of TDM for immunuppressive drugs.

4. Little literature describes also, even if rare, liver toxicity after the use of nirmatrelvir/ritonavir. Probably this aspect should also be mentioned as potential noticeable ADE that is independent from self-reporting.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

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Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

**********

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PLoS One. 2023 Oct 19;18(10):e0293302. doi: 10.1371/journal.pone.0293302.r002

Author response to Decision Letter 0


13 Sep 2023

PONE-D-23-18794

Re: A Retrospective Cohort Study of Prescribing Outcomes in outpatients treated with Nirmatrelvir–ritonavir for COVID-19 in an Interdisciplinary Community Clinic

September 12, 2023

Dear Editorial Staff and Reviewers,

Thank you for your thorough review and constructive comments. Our team has updated the manuscript based on suggestions from the reviewers and believe that the manuscript has been strengthened.

All authors have agreed to these manuscript revisions.

Below is the point-by-point response to each comment in bold.

Should you have any questions or additional comments, please let me know.

Sincerely,

Chris Kandel

On behalf of the study authors

Reviewer's Responses to Questions

Reviewer #1: I thank the authors for sharing their experience using nirmatrelvir/ritonavir in a large cohort of patients. The finding that 70% of patients would experience a drug-drug interaction is alarming. I have a few comments to strengthen the manuscript.

1. I advise the authors to expound further on "how" the management actually took place. Once a DDI is identified and a medication adjusted there needs to be some additional follow up either internally or externally to ensure that the former dose/schedule is re-instated. Who on your team was following through?

RESPONSE: A follow up phone call from a pharmacist affiliated with the hospital occurred on day 7. The following details have been added to the methods: Where changes to comedications were required, patients were counselled to either hold or adjust the comedication for 7 days and then received a follow-up phone call a week later from the pharmacist reminding them to resume their usual regimen.

2. Were these all consecutive patients meeting criteria? In other words, there were no other patients that were immediately not considered a candidate for NR that were excluded? When dealing with complex drug interactions that require more frequent monitoring there is always a risk that patients may not follow your instructions explicitly. Please expound on patient selection.

RESPONSE: We included all consecutive patients who were prescribed nirmatrelvir-ritonavir by a health care provider. This strategy excluded individuals who were eligible nirmatrelvir-ritonavir, but declined the medication or were not able to safely take it on account of unavoidable drug interactions. This has now been added to the Methods section.

3. How long were medications "held" or dose-adjusted? The half-life of ritonavir is short, but the irreversible inhibition can mean that inhibition of CYP 3A4 or other may be for as long as 7-14 days. Were medications held for the duration of NR or for longer?

RESPONSE: In general, comedications were held or dose-adjusted for the duration therapy plus an additional 2 days as per the Ontario Science Table treatment guidelines. The following details have been added to the methods: Where changes to comedications were required, patients were counselled to either hold or adjust the comedication for 7 days and then received a follow-up phone call a week later from the pharmacist reminding them to resume their usual regimen.

Reviewer #2: The paper is well written and provides information on drug-drug interactions to nirmatrelvir/ritonavir treatment on a fair number of patients. There are quite a number of DDIs, as has been reported already, most of them clinically significant. There were changes in co-medication, allowing patients to continue treatment, therefore high adherence to treatment was noted in this sample of patients. Moreover, there were no deaths. DDIs with statins were already reported in early 2022 and some protocols have requested discontinuation of statins before the initiation of treatment with nirmatrelvir/ritonavir. Is this something that had been considered?

RESPONSE: We explicitly asked each individual prescribed nirmatrelvir-ritonavir about the use of a statin due to the concern of a DDI. Although some guidelines suggest reduction of statin dose during therapy and for 2 days after as an option, all patients on statins in this cohort study were counselled to hold their statin for the duration of treatment and an additional 2 days given the low risk of harm with temporary statin cessation. The following detail has been added to the results: Out of 829 mitigation strategies, the co-medication was held in 56% (467/829) with the majority of these being HMG CoA reductase inhibitors (246/467), dose adjusted in 22% (179/840) and an alternative drug started in 8% (64/840) of cases.

The tables are quite informative. On table S3, in the supplement, it would it be interesting to provide info on the day treatment was initiated. Had these patients began treatment early or late post symptom initiation and diagnosis? Of course, this is just a few patients so no safe conclusions can be drawn. The study is retrospective, however, the conclusions are relevant and the strengths and weaknesses of the study are well described and acknowledged.

RESPONSE: Time from symptom onset to start of therapy has been added to table S3.

Reviewer #3: I want to thank the authors for this very interesting and well-wirtten paper, which analyze the clinical use of Nirmatrelvir/ritonavir by focusing on identifying and quantifying the DDI and ADE when prescribed as early treatment for COVID-19. The potential burden related to adverse events is well known in the clinical practice; however, very little literature is available on this side. Moreover, the methodology is very straightforward and accurate and limitations correctly outlined.

Some minor comments are needed in my opinion to further improve the quality of the paper.

1. I would specify whether a written informed consent was needed to be signed by participant in order to use data

RESPONSE: As this study was a retrospective cohort a waiver of informed consent was granted by the Research Ethics Board. This has been added to the Methods section.

2. In case of need for dose adjustment according to renal function, was the decision based on patient history (i.e known history of renal failure) or was creatinine assessed ad hoc?

RESPONSE: If a recent creatinine (<90 days) was unavailable, a creatinine was obtained in the emergency department or clinical assessment center. The following has been added under the Methods section to address this; For patients without a recent result, a creatinine level was ordered to assess renal function.

3. A proper assessment of potential DDI is of outmost importance to increase adherence and therefore ensure optimal efficacy. I would consider to add a couple of sentences in the discussion on the added value of TDM for immunuppressive drugs.

RESPONSE: The following has been added to the discussion section: Additionally, individuals on immunosuppressive drugs (e.g. sirolimus, tacrolimus) may require therapeutic drug monitoring to guide dose adjustment following nirmatrelvir-ritonavir therapy which requires additional coordination.

4. Little literature describes also, even if rare, liver toxicity after the use of nirmatrelvir/ritonavir. Probably this aspect should also be mentioned as potential noticeable ADE that is independent from self-reporting.

RESPONSE: We agree and this was the motivation for a conducting a detailed assessment of the real-world use of nirmatrelvir–ritonavir. The following has been added to the introduction section: Large observational studies using administrative databases have similarly demonstrated reductions in hospitalization with nirmatrelvir–ritonavir in vaccinated individuals, however these lack detailed data on adverse drug events (ADE) including those that do not require medical attention and potentially rare events such as liver toxicity, medication adherence and mitigation strategies for drug-drug interactions (DDI)

Decision Letter 1

Victor Daniel Miron

10 Oct 2023

A Retrospective Cohort Study of Prescribing Outcomes in outpatients treated with Nirmatrelvir–ritonavir for COVID-19 in an Interdisciplinary Community Clinic

PONE-D-23-18794R1

Dear Dr. Kandel,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Victor Daniel Miron

Academic Editor

PLOS ONE

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Thank you for your revisions. The author group has satisfactory addressed my comments. No further revisions requested at this time.

Reviewer #2: This is a review of thr revised manusctipt. As I initially replied, the paper is well written and provides information on drug-drug interactions to nirmatrelvir/ritonavir treatment on a reasonable number of patients. There are quite a number of DDIs, as has been reported already, most of them clinically significant though. However, there have been no deaths. There were changes in co-medication, allowing patients to continue treatment, therefore high adherence to treatment was noted in this sample of patients. Other reviewers have requested further information on these changes and it is now provided. My question on whether discontinuation of statins before the initiation of treatment with nirmatrelvir/ritonavir had been considered has now been answered as has my request for info on whether these patients had began treatment early or late post symptom initiation and diagnosis. The study is retrospective, however, the conclusions are relevant and the strengths and weaknesses of the study are well described and acknowledged.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

**********

Acceptance letter

Victor Daniel Miron

12 Oct 2023

PONE-D-23-18794R1

A Retrospective Cohort Study of Prescribing Outcomes in outpatients treated with Nirmatrelvir–ritonavir for COVID-19 in an Interdisciplinary Community Clinic

Dear Dr. Kandel:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Victor Daniel Miron

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Potential drug-drug interactions (DDI) with nirmatrelvir/ritonavir.

    (DOCX)

    S2 Table. Prevalence of DDIs.

    (DOCX)

    S3 Table. Characteristics of patients hospitalized for COVID-19.

    (DOCX)

    Data Availability Statement

    Data cannot be shared publicly because of the requirements of the Michael Garron Hospital Research Ethics Board. Data are available from the the Research Ethics Board (contact via ResearchEthicsBoard@tehn.ca) for researchers who meet the criteria for access to confidential data.


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