Abstract
Mismatch repair/microsatellite instability (MMR/MSI) status in colorectal cancer (CRC) has become fundamental as a diagnostic, prognostic, and predictive factor. MMR immunohistochemistry (IHC) is considered a simple and reliable approach; however, its effectiveness depends on pre-analytic factors. Aim of this study was to investigate the impact of different fixation times/protocols on MMR protein IHC quality. Left over tissue from surgically resected CRC samples (cold ischemia time < 30 min) where fixed as follows: standard formalin fixation (24–48 h); hypo-fixation (<20 h); hyper-fixation (>90 h); cold (4°C) fixation (24–48 h); standard fixation for small sample size (0.5×0.5 cm). Samples for each group were collected from 30 resected CRC and the following parameters were evaluated on 600 immunohistochemical stains: intensity of expression; patchiness of staining; presence of central artefact. Forty-six immunoreactions were inadequate (score 0 intensity), the majority regarding MLH1 or PMS2 in the hypo-fixation group (47.8%), followed by the hyper-fixation group (28.1%); cold formalin fixation showed the least inadequate cases. Patchiness and central artefact were more frequent in hypo-fixation and standard fixation group compared to the others. MLH1 (closely followed by PMS2) performed worse with regard to immunostaining intensity (p=0.0002) in the standard and in the hypo-fixation group (p< 0.00001). Using a small sample size improved patchiness/central artefacts. This is the first study specifically created to evaluate the impact of fixation on MMR protein IHC, showing that both formalin hypo- and hyper-fixation can cause problems; 24-h formalin fixation as well as cold (4°C) formalin fixation are recommended for successful IHC MMR evaluation.
Keywords: Microsatellite instability, Mismatch repair proteins, Colorectal cancer, Pre-analytic variables, Formalin fixation
Introduction
The highly conserved DNA mismatch repair (MMR) complex plays a crucial role in preserving genomic stability by identifying and correcting DNA mismatches, insertions and deletions that can occur during DNA replication. Deficient MisMatch Repair (dMMR) tumors are characterized by a high spontaneous mutation rate caused by defects in one of the 4 MMR genes (MLH1, PMS2, MSH2, MSH6) and EPCAM. Lynch syndrome (LS) is due to germline mutations of the MMR genes [1] while somatic mutations and, more frequently MLH1 promotor hypermethylation, lead to epigenetic silencing in sporadic, non-familial, colorectal cancer (CRC) and endometrial cancer.
Defects in the MMR complex can be identified using three different testing strategies. The less expensive, faster, and more accessible approach is the evaluation of MMR proteins (MLH1, PMS2, MSH2, and MSH6) by immunohistochemistry (IHC) on formalin-fixed and paraffin-embedded (FFPE) tumor samples [2, 3], while a PCR-based assay or Next Generation Sequencing approach, which identify Microsatellite Instability (MSI), are generally reserved for problematic cases [4].
From a clinical perspective, MMR screening/MSI testing has many advantages in CRC: (i) universal screening in CRC and endometrial cancer is being implemented for the identification of LS families [5–7]; (ii) stage II/III CRCs should be evaluated for dMMR/MSI status as they show better prognosis [8] and knowledge of MMR/MSI status influences the choice of adjuvant chemotherapy [9]; (iii) immune checkpoint inhibitor therapy has been approved for metastatic dMMR/MSI CRCs or recurrences [10].
Routine MMR IHC is being performed on all newly resected CRC specimens in many institutions and it provides a simple and reliable approach. Indeed, the majority of pathology labs are well equipped for IHC; nevertheless, the effectiveness of IHC depends on how the tissue is handled in terms of pre-analytic factors [11–13]. The impact of pre-analytic factors has been extensively studied in some cancer types, less so in others [14–16].
MMR/MSI testing is becoming ever more important in the clinical and therapeutic management of CRC and a reliable test result is fundamental. A relatively recent study by Cohen et al. has, however, shown that primary resistance to immune checkpoint inhibitor therapy may be due to errors in MMR/MSI evaluation and this was seen in 10% of patients with metastatic CRC who had been recruited for treatment with a false-positive dMMR or MSI-PCR result determined by local laboratories [17]. The reasons behind these errors are variable, including pre-analytical factors (which are by far the most frequent), assay-related factors, and interpretation problems giving rise to possibly discrepant results [18].
Cold ischemia time and formalin fixation time/process have a major impact on IHC in the pre-analytic stage [19, 20] and this is especially true in large resection specimens (less so in small biopsies which are usually quickly immersed in formalin) [21, 22]. Fixation is an essential step in tissue processing, and both under and over-fixation of surgical samples can result in poor nucleic acid quality, and inconclusive DNA/RNA analysis and can impact IHC by lowering the intensity and extent of immunostaining [13, 23, 24]. Other reasons for pre-analytic variability include hypoxia related-factors (e.g., in pre-treated colorectal liver metastases or neoadjuvant treatment for example in locally advanced rectal cancer [25]) as well as long-term archival preservation of FFPE blocks or unstained sections [26, 27]. A recent study shows how cold (4°C) formalin fixation ensures high-quality DNA, out-performing standard room temperature fixation and its use in antigen preservation for IHC could also be effective [28, 29].
The present study aims to investigate the impact of formalin hypo- and hyperfixation on IHC for MMR proteins by using different fixation protocols on left-over tissue from surgically resected CRC specimens with known cold ischemia times. A further aim was to investigate whether cold (4°C) formalin fixation could improve IHC quality.
Materials and methods
Sample collection
Sample accrual was performed at the Unit of Anatomic Pathology, University of Genova and IRCCS San Martino Polyclinic Hospital, Genova Italy from surgically resected CRC specimens with the following inclusion criteria:
Only non-fixed, fresh, CRC resected cases;
Large dimensions of the CRC (only left-over tissue was collected after sampling for diagnosis);
Samples sent to the Anatomic Pathology laboratory with known cold ischemia times of less than 30 min;
CRC which had not undergone prior neoadjuvant therapy.
Study protocol
From each selected neoplasm, 5 samples were taken and fixed in 10% neutral buffered formalin as follow:
Group A: Standard: formalin fixation at room temperature between 24 and 48 h; dimensions 2×1 cm.
Group B: Hypo-fixation in formalin at room temperature < 20 h; 2×1 cm dimensions.
Group C: Hyper-fixation in formalin at room temperature > 90 h; dimensions 2×1 cm
Group D: Cold (4°C) formalin fixation between 24 and 48 h; dimensions 2×1 cm.
Group E: Standard small: formalin fixation at room temperature between 24 and 48 h; dimensions 0.5×0.5 cm.
The normal samples were taken as best of care dictates, ensuring that samples included areas of deepest invasion, as well as areas with non-neoplastic mucosa. Immunostaining was performed on the selected tissue block, avoiding samples with large areas of necrosis or mucin. The small samples were taken from the invasive edges and the central (often more necrotic) areas were avoided; where possible non-neoplastic tissue was included in the small sample.
All groups were composed of 30 samples each. Room temperature formalin fixed samples were routinely processed. Cold formalin fixed samples were immediately immersed in 4°C pre-chilled formalin and kept at 4°C for fixation time. Samples were dehydrated in 4°C pre-chilled 95% ethanol for 4 h and then sent to processing using the standard processing program on Leica ASP6025S processor (Leica Microsystems, Wetzlar, Germany) starting from the second ethanol step [29].
Immunohistochemistry protocols
Immunohistochemistry was performed on all samples for four MMR proteins: MLH1, PMS2, MSH2 and MSH6. Immunoreactions were performed using the automated BenchMark ULTRA immunostainer (Ventana Medical Systems, Tucson, Arizona, USA). See Table 1 for antibody clones and protocols.
Table 1.
Immunohistochemistry specifications for mismatch repair proteins (MLH1, MSH2, PMS2, MSH6) with specifications for clone, pre-treatment, incubation and development on the Ventana BenchMark ULTRA immunostainer (Ventana Medical Systems, Tucson, Arizona, USA)
MLH1 | PMS2 | MSH2 | MSH6 | |
---|---|---|---|---|
Manufacturer | VENTANA anti-MLH1 | VENTANA anti-MSH2 |
VENTANA anti-MSH6 |
VENTANA anti-PMS2 |
Clone | M1 | A16-4 | G219-1129 | SP93 |
Heat pretreatment | 64 min | 92 min | 36 min | 36 min |
Antibody incubation | 80 min at room temperature | 32 min room temperature | 60 min at room temperature | 20 min at 37°C |
Development system | ULTRAVIEW DAB IHC | OPTIVIEW DAB IHC | ULTRAVIEW DAB IHC | ULTRAVIEW DAB IHC |
Evaluation of IHC slides
All immunostained slides were evaluated by expert gastrointestinal pathologists with ten-year experience in Universal MMR screening (FG, LM). Positive controls were available (on-slide controls [30] and as internal controls - normal colonic glands or stroma/lymphocytes).
Complete loss or preservation of nuclear expression of MMR proteins permitted categorization as MMR deficient (dMMR) or proficient (pMMR) and was performed for each CRC on the standard sample (A) [31, 32]. In short, dMMR was defined as complete loss of nuclear expression of tumor nuclei with maintained expression in the nuclei of internal and on-slide controls while pMMR was defined as retained nuclear expression in neoplastic nuclei comparable to controls. Indeterminate (iMMR) was defined as tumor nuclei showing either focal (<10% of the surface) or weak (fainter than control nuclei) expression.
IHC evaluation was performed based on the following criteria as specified in Table 2:
Intensity of nuclear expression was indicated as scores from 0 (absence of nuclear expression) to score 3 (intense nuclear immunostaining) as shown in Fig. 1 and was evaluated in control nuclei and in tumor nuclei (neoplastic nuclei were not assessed in cases of deficient MMR protein);
Patchiness of staining was expressed according to percentage areas of immunostaining. True heterogeneity, defined as areas of loss of immunoexpression in multiple adjacent glands, with preserved internal control and stark contrast between areas of preserved and deficient zones, was noted but was not evaluated as part of patchiness [22]).
Presence or absence of central artefact: this was defined as the presence of a rim of adequately stained tissue towards the outer surface but reduced/inadequate expression in the central part of the tissue [33] and was scored as absent, mild, moderate and marked.
Table 2.
Evaluation criteria and scoring systems for MisMarch repair immunohistochemistry
MMR IHC evalutation criteria* | Score 0 | Score 1 | Score 2 | Score 3 |
---|---|---|---|---|
INTENSITY | stain not assessable; inadequate | Very Faint immunostaining | Moderate immunostaining | Intense immunostaining |
PATCHINESS | Absent (staining in 100% of the sample) | Mild (staining in 70-99% of the sample) | Moderate (staining in 50-69% of the sample) | Severe (staining in 10-49% of the sample) |
CENTRAL ARTEFACT | Absent | Mild (most of the section stained except for the innermost portion) | Moderate (half of the outermost portion of the section adequately stained while the innermost half was not | Marked (stain only in the outermost rim, while most of the section was weakly/inadequately stained |
MMR – MisMatch Repair; IHC – immunohistochemistry
*evaluation was based on nuclear expression of the internal controls (normal tissue, lymphocytes, and stroma cells)
Fig. 1.
Scoring system for intensity of immunoreaction using anti-MLH1 antibody on colorectal carcinoma samples: a) Score 0 – absence of immunoexpression in neoplastic and internal control nuclei (scale bar 50 micron); b) Score 1 – faint intensity of immunoexpression in neoplastic and internal control nuclei (scale bar 50 micron); c) Score 2 – moderate, clearly visible immunoexpression in neoplastic nuclei, slightly more intense than internal control nuclei (scale bar 50 micron); d) Score 3 – intense, clearly visible immunoexpression in neoplastic nuclei, more intense than internal control nuclei (scale bar 50 micron)
Statistical analysis
Descriptive statistics was applied to demographic and histologic characteristics. The intensity, patchiness and central artefact scoring were compared between the fixation protocols and standard; differences in staining criteria between protocols for each antibody were calculated using the chi-squared test. A cut-off of p < 0.05 indicated a significant difference between groups.
Clinical data, including patient’s age, gender and site of tumor were obtained from the pathology database and all data were anonymized (all patients who undergo surgery in our institution sign informed consent for research purposes). Ethics committee approval was obtained at the University of Genova/IRCCS Ospedale Policlinico San Martino, Genova, Italy, number 101/2021 (1 March 2021). The study was conducted in accordance with the ethical principles of the Declaration of Helsinki.
Results
Thirty CRC samples were collected prospectively; the case series included 9 females and 21 males (median age - 71 years; range 26–90 years). Fifteen CRCs were right sided; 9 were left sided and 6 cases were rectal cancers. With regards to stage, 12 patients were stage II, 14 were stage III, and 4 were stage IV.
The mean fixation (SD standard deviation) times were: standard fixation group (A) 31.1 hours (SD 8.99); hypo-fixation group (B) 17.27 h (SD 1.74); hyper-fixation group (C) 115,73 (SD 20.67); cold fixation (D) 26.9 h (SD 3.144).
Six-hundred immunohistochemical slides were evaluated, 150 for each antigen (MLH1, PMS2, MSH2, MSH6). Three CRCs were dMMR (loss of MLH1/PMS2 expression); the rest (27) were pMMR.
Considering all the immunoreactions performed, 46 immunoreactions (21 for MLH1, 16 for PMS2; 4 for MSH2 and 5 for MSH6) were inadequate (score 0 intensity) and would have required additional steps for MMR evaluation (IHC repetition or confirmatory PCR). Of the inadequate reactions, the majority were seen in the hypo-fixation group (B) – 22/59 cases (47.8%), followed by the hyper-fixation group (C) – 13/59 cases (28.1%) while cold formalin fixation (group D) showed the least inadequate cases (2/59 – 4.3%) see Table 3.
Table 3.
Number of cases with score 0 intensity, score 2-3 patchiness and score 2-3 central artefact according to antibody (MLH1, PMS2, MSH2, MSH6) and fixation group (A-E)
Group (n° samples) | Length of fixation | Temperature | Size | MLH1 n° samples |
PMS2 n° samples |
MSH2 n° samples |
MSH6 n° samples |
Total n° samples (%) |
---|---|---|---|---|---|---|---|---|
SCORE 0 INTENSITY | ||||||||
Group A (30) | Standard (24-48 hrs) | Room Temperature | Standard | 3 | 2 | 0 | 1 | 6 (13.1%) |
Group B (30) | Hypo (<20 hrs) | Room Temperature | Standard | 12 | 8 | 1 | 1 | 22 (47.8%) |
Group C (30) | Hyper (>90 hrs) | Room Temperature | Standard | 3 | 5 | 2 | 3 | 13 (28.3%) |
Group D (30) | Standard (24-48 hrs) | Cold (°4C) | Standard | 1 | 0 | 1 | 0 | 2 (4.3%) |
Group E (30) | Standard (24-48 hrs) | Room Temperature | Small | 2 | 1 | 0 | 0 | 3 (6.5%) |
Total | 21 (45.7%) | 16 (34.8%) | 4 (8.7%) | 5 (10.8%) | 46 (100%) | |||
SCORE 2-3 PATCHINESS | ||||||||
Group A (30) | Standard (24-48 hrs) | Room Temperature | Standard | 24 | 18 | 10 | 11 | 63 (24.8%) |
Group B (30) | Hypo (<20 hrs) | Room Temperature | Standard | 23 | 21 | 15 | 15 | 74 (29.1%) |
Group C (30) | Hyper (>90 hrs) | Room Temperature | Standard | 13 | 17 | 9 | 7 | 46 (18.1%) |
Group D (30) | Standard (24-48 hrs) | Cold (°4C) | Standard | 14 | 13 | 8 | 3 | 38 (15.0%) |
Group E (30) | Standard (24-48 hrs) | Room Temperature | Small | 10 | 11 | 7 | 5 | 33 (13.0%) |
Total | 84 (33.1%) | 80 (31.5%) | 49 (19.3%) | 41 (16.1%) | 254 (100%) | |||
SCORE 2-3 CENTRAL ARTEFCAT | ||||||||
Group A (30) | Standard (24-48 hrs) | Room Temperature | Standard | 13 | 11 | 6 | 9 | 39 (25.9%) |
Group B (30) | Hypo (<20 hrs) | Room Temperature | Standard | 18 | 16 | 8 | 6 | 48 (31.8%) |
Group C (30) | Hyper (>90 hrs) | Room Temperature | Standard | 7 | 6 | 7 | 8 | 28 (18.5%) |
Group D (30) | Standard (24-48 hrs) | Cold (°4C) | Standard | 11 | 3 | 3 | 1 | 18 (11.9%) |
Group E (30) | Standard (24-48 hrs) | Room Temperature | Small | 3 | 6 | 4 | 5 | 18 (11.9%) |
Total | 52 (34.4%) | 42 (27.8%) | 28 (18.6%) | 29 (19.2%) | 151 (100%) |
Score 2–3 patchiness was seen more frequently in group B (hypo-fixed cases – 74/281 - 26.3%) and group A (standard – 63/281 – 22.4%) compared to the other groups. No true case of heterogeneity was seen. Central artefact (score 2-3) showed similar results (group B - hypo-fixed cases – 48/157 – 30.6%) and group A - standard – 39/157 – 24.9%) as shown in Table 3.
Assessment of single antibodies by fixation group
MLH1 performed worse compared to the other antibodies (closely followed by PMS2) especially with regard to intensity (score 0–1 versus score 2–3) of immunostaining (p=0.0002) in the standard fixation (group A) and even more so in the hypo-fixation group (group B) (p< 0.00001). MSH2 and MSH6 suffered least from problems in intensity with most cases (ranging between 86.7 and 96.7%) showing score 2–3 intensity. Patchiness and central artefact also affected MLH1 and PMS2 more than MSH2 and MSH6 (see Table 3).
Comparison of fixation groups against standard (group A)
Considering the totality of immunoreactions (irrespective of antibody) compared against the standard (group A) the following differences were observed:
Hypo-fixation (group B) showed significantly worse immunoreaction intensity (p=0.0013) with increase of score 2-3 patchiness and central artefact (Fig. 2), though this was not statistically significant.
Hyper-fixation (group C) significantly worsened the intensity of immunoexpression (p<0.00001) but reduced the presence of patchiness and central artefact (p=0.046 and p=0.0045 respectively) when this was considered as present (any score above 0) or absent.
Cold fixation (group D) presented a significantly better intensity of nuclear expression (p=0.02) when considering score 0–1 versus score 2–3 but not when considering score 0 versus scores 1-2-3 combined; it did show reduction of patchiness (p=0.02), and reduced, but not significant, presence of central artefact.
Fig. 2.
Examples of central artefact and patchiness in colorectal samples immunostained with anti-MLH1: a) Score 2 central artefact in a case of colorectal carcinoma in the standard group (group A) showing central area of reduced immunoexpression in a clearly proficient MisMatch Repair case (scale bar 200 micron); b) Score 3 central artefact in a case of colorectal carcinoma in the hypo-fixed group (group B) showing clear central area of reduced immunoexpression in a proficient MisMatch Repair case (scale bar 200 micron); c) Score 2 patchiness in a case of colorectal carcinoma in the hypo-fixed group (group B) in a proficient MisMatch Repair case (scale bar 100 micron); d) Score 1 patchiness in a case of colorectal carcinoma in the standard group (group A) in a proficient MisMatch Repair case (scale bar 100 micron)
Comparison of immunoreactions between standard small block (group E) and standard (group A)
Using a small sample size did not present a significant increase in immunoreaction intensity, compared to standard size, however patchiness and central artefact were significantly reduced (p=0.0008 and p=0.0014 respectively).
Discussion
Recent years have placed much emphasis on the impact of analytic variables on tissue biomarker interpretation using IHC. Indeed, precision medicine requires high inter-laboratory concordance for biomarker testing and the standardization of all IHC phases (pre-analytical, analytical and post-analytical) is fundamental, hence the publication of recommendations for IHC testing, validation and standardization [2, 34–36].
With regard to MMR testing, the literature is in short supply of studies on pre-analytical variables, even though they are known to be of importance [16]. One recent study showed that various tissue processing protocols did not seem to affect MMR IHC [37]; however, no detailed study on the impact of fixation on MMR testing is available. The present study is, therefore, the first to apply different fixation protocols on a prospectively collected series of CRC samples with the aim of providing a basis for future recommendations on MMR testing by IHC. The study used only fresh left-over tissue with short, annotated, cold ischemia times so as not to add a further pre-analytic variable which likely has an influence on MMR testing. Furthermore, fixation times were strictly controlled and any cases which, for any reason, did not fit into the pre-established time slots were excluded (e.g., CRC cases arriving on Friday afternoon with processing possible on Sunday night).
The most problematic antibodies (and this is well known from personal experience, though not often referred to in the literature) on the Ventana Benchmark platform are MLH1 and PMS2. This is true both for intensity of the immunosignal and patchiness of expression and this is rendered even more evident by hypo-fixation.
Indeed, hypo-fixation (<20 h for surgical specimens) and hyper-fixation (>90 h for surgical specimens) were associated with more cases of inadequate, score 0, immunoreactivity compared to the standard fixation group. Formalin creates crosslinks with proteins by forming methylene bridges between amino groups thus maintaining the tissue’s structural cohesion and inactivating lytic enzymes as well as interacting with nucleic acids. When tissues are placed in formalin, the resulting equilibrium between reactive formaldehyde species (which fix) and its non-reactive hydrate, methylene glycol (which penetrates) [38] can explain why formalin shows brisk penetration rates but slow fixation. The need for more streamlined laboratory workflow, reduced turn-around times and faster diagnosis/biomarker availability has led to the development of shorter fixation protocols, however, as shown by our study (and others in different tissue types [39]), they negatively impact IHC quality. Previous studies recommended a minimum of 8 hours of formalin [36] even though complete tissue fixation requires 24 h; this 8-h rule however, does not consider sample size and thickness as well as intra-laboratory variables. In our study, hypo-fixation, even at an average of 17 h (well above the recommended 8 hours, and even with this length of time gross samples were still slightly pink, indicating insufficient fixation), seems to cause major problems with regard to immunosignal intensity but also patchiness/central artefact of MMR expression [40].
Hyper-fixation, on the other hand can be due to various organization problems such as hub laboratories receiving partially fixed, unopened samples from different hospitals, no laboratory activity on weekends/holidays, problems in personnel leading to long turnaround times and lengthy formalin immersion, but this still shows an impact on IHC due to increased formalin cross-linking making antigens less available for immunoreactions [11, 12]. Antigen retrieval (whether temperature or enzymatic) can overcome this somewhat; however, it does mean that individual laboratories need to tailor their IHC to their own pre-analytical variables. In our study, hyper-fixation reduces central artefacts, probably due to the fact that longer immersion in formalin guarantees fixation of even the innermost tissue portions.
Cold formalin fixation (4°C) has been proposed as a valid alternative option [12, 28, 41] with superior IHC staining quality. The present study was concordant with this finding, showing improved immunosignal intensity and reduced patchiness/central artefact in samples immersed in cold formalin as it probably reduces lytic enzyme activity (preserving tissue antigenicity) and, with regard to formalin fixation, it increases its diffusion capacity in tissues. Furthermore, cold formalin fixation has been shown to better preserve DNA and RNA integrity and reduce fragmentation [28, 29]. Cold formalin fixation is probably not feasible for whole resection samples as it requires large spaces for cold storage (not available in most laboratories), however, a dedicated sample of neoplastic tissue in a cold stored biocassette could be a possibility. This would facilitate IHC evaluation and, considering the expansion of molecular biomarkers in cancer, provide high-quality DNA and RNA for PCR and NGS; however, it could unfortunately introduce further variability (especially considering that the choice of cold storage sample is made only on the basis of gross appearance).
Considering that small biopsy samples suffer from reduced impact of pre-analytic variables we decided to try and see if a small CRC sample, specifically sampled for MMR evaluation, could prove useful. The main reasoning was that the smaller the sample, the more easily formalin would penetrate and fix the tissue. Small sample size did not impact substantially on immunosignal intensity, which was similar to the standard group, however immunostaining was less patchy and more complete with little central artefact demonstrating that small sample size does permit more homogenous fixation. A future expansion on the present study would be to address problems in possible hypo-fixation of biopsy samples as they are often processed quickly to reduce turn-around times.
The main disadvantage of this study is that other pre-analytic variables were not studied, and indeed more studies analysing a wide range of pre-analytic (in particular cold ischemia, processing, storage etc [42]) and analytic factors are necessary, especially considering how important MMR testing has become for patient management/treatment.
In conclusion, this is the first study specifically created to evaluate the impact of fixation on MMR protein evaluation by IHC, showing that both hypo- and hyper-fixation with formalin can cause problems in immunosignal intensity, and therefore evaluation, and that hypo-fixation further increases patchiness and central artefacts. In short, 24-h formalin fixation is recommended (significantly longer than the previously suggested 8 h), as well as cold (4°C) formalin fixation which has shown to be a valid option for successful IHC MMR evaluation.
Author contribution
All authors contributed to the study conception and design. Material preparation, data collection and analysis were performed by Federica Grillo, Michele Paudice and Luca Mastracci. Immunohistochemistry and sample processing were performed by Simona Pigozzi and Griogia Anselmi. The first draft of the manuscript was written by Federica Grillo, Murad Ali and Luca Mastracci and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.
Funding
Open access funding provided by Università degli Studi di Genova within the CRUI-CARE Agreement. IRCCS Ospedale Policlinico San Martino provided funds in the 5x1000 2019 (to Prof. Federica Grillo) and 5x1000 2021 (to Dr Stefania Sciallero) funding framework.
Data Availability
All data are available from the corresponding author upon reasonable request.
Declarations
Informed consent
All data were anonymized; all patients who undergo surgery in our institution sign informed consent for research purposes.
Research involving human participants
Ethics committee approval was obtained at the University of Genova/IRCCS Ospedale Policlinico San Martino, Genova, Italy, number 101/2021 (1 March 2021).
The study was conducted in accordance with the ethical principles of the Declaration of Helsinki.
Conflict of interest
The authors declare no competing interests.
Footnotes
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
References
- 1.Peltomäki P, Nyström M, Mecklin JP, Seppälä TT. Lynch Syndrome Genetics and Clinical Implications. Gastroenterology. 2023;164:783–799. doi: 10.1053/j.gastro.2022.08.058. [DOI] [PubMed] [Google Scholar]
- 2.Bartley AN, Mills AM, Konnick E, Overman M, Ventura CB, Souter L, Colasacco C, Stadler ZK, Kerr S, Howitt BE, Hampel H, Adams SF, Johnson W, Magi-Galluzzi C, Sepulveda AR, Broaddus RR. Mismatch Repair and Microsatellite Instability Testing for Immune Checkpoint Inhibitor Therapy: Guideline From the College of American Pathologists in Collaboration With the Association for Molecular Pathology and Fight Colorectal Cancer. Arch Pathol Lab Med. 2022;146:1194–1210. doi: 10.5858/arpa.2021-0632-CP. [DOI] [PubMed] [Google Scholar]
- 3.Wang C, Zhang L, Vakiani E, Shia J. Detecting mismatch repair deficiency in solid neoplasms: immunohistochemistry, microsatellite instability, or both? Mod Pathol. 2022;35:1515–1528. doi: 10.1038/s41379-022-01109-4. [DOI] [PubMed] [Google Scholar]
- 4.Luchini C, Bibeau F, Ligtenberg MJL, Singh N, Nottegar A, Bosse T, Miller R, Riaz N, Douillard JY, Andre F, Scarpa A. ESMO recommendations on microsatellite instability testing for immunotherapy in cancer, and its relationship with PD-1/PD-L1 expression and tumour mutational burden: a systematic review-based approach. Ann Oncol. 2019;30:1232–1243. doi: 10.1093/annonc/mdz116. [DOI] [PubMed] [Google Scholar]
- 5.Evaluation of Genomic Applications in Practice and Prevention (EGAPP) Working Group Recommendations from the EGAPP Working Group: genetic testing strategies in newly diagnosed individuals with colorectal cancer aimed at reducing morbidity and mortality from Lynch syndrome in relatives. Genet Med. 2009;11:35–41. doi: 10.1097/GIM.0b013e31818fa2ff. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Stjepanovic N, Moreira L, Carneiro F, Balaguer F, Cervantes A, Balmaña J, Martinelli E, ESMO Guidelines Committee Hereditary gastrointestinal cancers: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up. Ann Oncol. 2019;30:1558–1571. doi: 10.1093/annonc/mdz233. [DOI] [PubMed] [Google Scholar]
- 7.Weiss JM, Gupta S, Burke CA, Axell L, Chen LM, Chung DC, Clayback KM, Dallas S, Felder S, Gbolahan O, Giardiello FM, Grady W, Hall MJ, Hampel H, Hodan R, Idos G, Kanth P, Katona B, Lamps L, Llor X, Lynch PM, Markowitz AJ, Pirzadeh-Miller S, Samadder NJ, Shibata D, Swanson BJ, Szymaniak BM, Wiesner GL, Wolf A, Yurgelun MB, Zakhour M, Darlow SD, Dwyer MA, Campbell M. NCCN Guidelines® Insights: Genetic/Familial High-Risk Assessment: Colorectal, Version 1.2021. J Natl Compr Cancer Netw. 2021;19:1122–1132. doi: 10.1164/jnccn.2021.0048. [DOI] [PubMed] [Google Scholar]
- 8.Sinicrope FA, Shi Q, Smyrk TC, Thibodeau SN, Dienstmann R, Guinney J, Bot BM, Tejpar S, Delorenzi M, Goldberg RM, Mahoney M, Sargent DJ, Alberts SR. Molecular markers identify subtypes of stage III colon cancer associated with patient outcomes. Gastroenterology. 2015;148:88–99. doi: 10.1053/j.gastro.2014.09.041. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Sargent DJ, Marsoni S, Monges G, Thibodeau SN, Labianca R, Hamilton SR, French AJ, Kabat B, Foster NR, Torri V, Ribic C, Grothey A, Moore M, Zaniboni A, Seitz JF, Sinicrope F, Gallinger S. Defective mismatch repair as a predictive marker for lack of efficacy of fluorouracil-based adjuvant therapy in colon cancer. J Clin Oncol. 2010;28:3219–3226. doi: 10.1200/JCO.2009.27.1825. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.André T, Shiu KK, Kim TW, Jensen BV, Jensen LH, Punt C, Smith D, Garcia-Carbonero R, Benavides M, Gibbs P, de la Fouchardiere C, Rivera F, Elez E, Bendell J, Le DT, Yoshino T, Van Cutsem E, Yang P, Farooqui MZH, Marinello P, Diaz LA, Jr, KEYNOTE-177 Investigators Pembrolizumab in Microsatellite-Instability-High Advanced Colorectal Cancer. N Engl J Med. 2020;383:2207–2218. doi: 10.1056/NEJMoa2017699. [DOI] [PubMed] [Google Scholar]
- 11.Engel KB, Moore HM. Effects of preanalytical variables on the detection of proteins by immunohistochemistry in formalin-fixed, paraffin-embedded tissue. Arch Pathol Lab Med. 2011;135:537–543. doi: 10.5858/2010-0702-RAIR.1. [DOI] [PubMed] [Google Scholar]
- 12.Bass BP, Engel KB, Greytak SR, Moore HM. A review of preanalytical factors affecting molecular, protein, and morphological analysis of formalin-fixed, paraffin-embedded (FFPE) tissue: how well do you know your FFPE specimen? Arch Pathol Lab Med. 2014;138:1520–1530. doi: 10.5858/arpa.2013-0691-RA. [DOI] [PubMed] [Google Scholar]
- 13.Compton CC, Robb JA, Anderson MW, Berry AB, Birdsong GG, Bloom KJ, Branton PA, Crothers JW, Cushman-Vokoun AM, Hicks DG, Khoury JD, Laser J, Marshall CB, Misialek MJ, Natale KE, Nowak JA, Olson D, Pfeifer JD, Schade A, Vance GH, Walk EE, Yohe SL. Pre-analytics and Precision Pathology: Pathology Practices to Ensure Molecular Integrity of Cancer Patient Biospecimens for Precision Medicine. Arch Pathol Lab Med. 2019;143:1346–1363. doi: 10.5858/arpa.2019-0009-SA. [DOI] [PubMed] [Google Scholar]
- 14.Pekmezci M, Szpaderska A, Osipo C, Ersahin C. The effect of cold ischemia time and/or formalin fixation on estrogen receptor, progesterone receptor, and human epidermal growth factor receptor-2 results in breast carcinoma. Pathol Res Int. 2012;2012:947041–947047. doi: 10.1155/2012/947041. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.van Seijen M, Brcic L, Gonzales AN, Sansano I, Bendek M, Brcic I, Lissenberg-Witte B, Korkmaz HI, Geiger T, Kammler R, Stahel R, Thunnissen E. Impact of delayed and prolonged fixation on the evaluation of immunohistochemical staining on lung carcinoma resection specimen. Virchows Arch. 2019;475:191–199. doi: 10.1007/s00428-019-02595-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Parente P, Grillo F, Vanoli A, Macciomei MC, Ambrosio MR, Scibetta N, Filippi E, Cataldo I, Baron L, Ingravallo G, Cazzato G, Melocchi L, Liserre B, Giordano C, Arborea G, Pilozzi E, Scapinello A, Aquilano MC, Gafà R et al (2023) The day-to-day practice of MMR and MSI assessment in colorectal adenocarcinoma: what we know and what we still need to explore. Dig Dis 1. 10.1159/000531003 [DOI] [PubMed]
- 17.Cohen R, Hain E, Buhard O, Guilloux A, Bardier A, Kaci R, Bertheau P, Renaud F, Bibeau F, Fléjou JF, André T, Svrcek M, Duval A. Association of Primary Resistance to Immune Checkpoint Inhibitors in Metastatic Colorectal Cancer With Misdiagnosis of Microsatellite Instability or Mismatch Repair Deficiency Status. JAMA Oncol. 2019;5:551–555. doi: 10.1001/jamaoncol.2018.4942. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Robb JA, Gulley ML, Fitzgibbons PL, Kennedy MF, Cosentino LM, Washington K, Dash RC, Branton PA, Jewell SD, Lapham RL. A call to standardize preanalytic data elements for biospecimens. Arch Pathol Lab Med. 2014;138:526–537. doi: 10.5858/arpa.2013-0250-CP. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Bai Y, Tolles J, Cheng H, Siddiqui S, Gopinath A, Pectasides E, Camp RL, Rimm DL, Molinaro AM. Quantitative assessment shows loss of antigenic epitopes as a function of pre-analytic variables. Lab Investig. 2011;91:1253–1261. doi: 10.1038/labinvest.2011.75. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Stumptner C, Pabst D, Loibner M, Viertler C, Zatloukal K. The impact of crosslinking and non-crosslinking fixatives on antigen retrieval and immunohistochemistry. New Biotechnol. 2019;52:69–83. doi: 10.1016/j.nbt.2019.05.003. [DOI] [PubMed] [Google Scholar]
- 21.Cree IA, Deans Z, Ligtenberg MJ, Normanno N, Edsjö A, Rouleau E, Solé F, Thunnissen E, Timens W, Schuuring E, Dequeker E, Murray S, Dietel M, Groenen P, Van Krieken JH, European Society of Pathology Task Force on Quality Assurance in Molecular Pathology; Royal College of Pathologists Guidance for laboratories performing molecular pathology for cancer patients. J Clin Pathol. 2014;67:923–931. doi: 10.1136/jclinpath-2014-202404. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Grillo F, Paudice M, Gambella A, Bozzano S, Sciallero S, Puccini A, Lastraioli S, Dono M, Parente P, Vanoli A, Angerilli V, Fassan M, Mastracci L (2023) Evaluating mismatch repair deficiency in colorectal cancer biopsy specimens. Histochem Cell Biol. 10.1007/s00418-023-02202-8 [DOI] [PMC free article] [PubMed]
- 23.Malapelle U, Parente P, Pepe F, De Luca C, Cerino P, Covelli C, Balestrieri M, Russo G, Bonfitto A, Pisapia P, Fiordelisi F, D'Armiento M, Bruzzese D, Loupakis F, Pietrantonio F, Triassi M, Fassan M, Troncone G, Graziano P. Impact of Pre-Analytical Factors on MSI Test Accuracy in Mucinous Colorectal Adenocarcinoma: A Multi-Assay Concordance Study. Cells. 2020;9:2019. doi: 10.3390/cells9092019. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.Cazzato G, Caporusso C, Arezzo F, Cimmino A, Colagrande A, Loizzi V, Cormio G, Lettini T, Maiorano E, Scarcella VS, Tarantino P, Marrone M, Stellacci A, Parente P, Romita P, De Marco A, Venerito V, Foti C, Ingravallo G, Rossi R, Resta L. Formalin-Fixed and Paraffin-Embedded Samples for Next Generation Sequencing: Problems and Solutions. Genes. 2021;23(12):1472. doi: 10.3390/genes12101472. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Bao F, Panarelli NC, Rennert H, Sherr DL, Yantiss RK. Neoadjuvant therapy induces loss of MSH6 expression in colorectal carcinoma. Am J Surg Pathol. 2010;34:1798–1804. doi: 10.1097/PAS.0b013e3181f906cc. [DOI] [PubMed] [Google Scholar]
- 26.Grillo F, Bruzzone M, Pigozzi S, Prosapio S, Migliora P, Fiocca R, Mastracci L. Immunohistochemistry on old archival paraffin blocks: is there an expiry date? J Clin Pathol. 2017;70:988–993. doi: 10.1136/jclinpath-2017-204387.28596153. [DOI] [PubMed] [Google Scholar]
- 27.Grillo F, Pigozzi S, Ceriolo P, Calamaro P, Fiocca R, Mastracci L. Factors affecting immunoreactivity in long-term storage of formalin-fixed paraffin-embedded tissue sections. Histochem Cell Biol. 2015;144:93–99. doi: 10.1007/s00418-015-1316-4. [DOI] [PubMed] [Google Scholar]
- 28.Bussolati G, Annaratone L, Medico E, D'Armento G, Sapino A. Formalin fixation at low temperature better preserves nucleic acid integrity. PLoS One. 2011;6(6):e21043. doi: 10.1371/journal.pone.0021043. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Berrino E, Annaratone L, Miglio U, Maldi E, Piccinelli C, Peano E, Balmativola D, Cassoni P, Pisacane A, Sarotto I, Venesio T, Sapino A, Marchiò C. Cold Formalin Fixation Guarantees DNA Integrity in Formalin Fixed Paraffin Embedded Tissues: Premises for a Better Quality of Diagnostic and Experimental Pathology With a Specific Impact on Breast Cancer. Front Oncol. 2020;10:173. doi: 10.3389/fonc.2020.00173. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Bragoni A, Gambella A, Pigozzi S, Grigolini M, Fiocca R, Mastracci L, Grillo F. Quality control in diagnostic immunohistochemistry: integrated on-slide positive controls. Histochem Cell Biol. 2017;148:569–573. doi: 10.1007/s00418-017-1596-y. [DOI] [PubMed] [Google Scholar]
- 31.Remo A, Fassan M, Lanza G. Immunohistochemical evaluation of mismatch repair proteins in colorectal carcinoma: the AIFEG/GIPAD proposal. Pathologica. 2016;108:104–109. [PubMed] [Google Scholar]
- 32.Bateman AC. DNA mismatch repair proteins: scientific update and practical guide. J Clin Pathol. 2021;74:264–268. doi: 10.1136/jclinpath-2020-207281. [DOI] [PubMed] [Google Scholar]
- 33.Grillo F, Campora M, Pigozzi S, Bonadio S, Valle L, Ferro J, Paudice M, Dose B, Mastracci L. Methods for restoration of ki67 antigenicity in aged paraffin tissue blocks. Histochem Cell Biol. 2021;156:183–190. doi: 10.1007/s00418-021-01987-w. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Fitzgibbons PL, Bradley LA, Fatheree LA, Alsabeh R, Fulton RS, Goldsmith JD, Haas TS, Karabakhtsian RG, Loykasek PA, Marolt MJ, Shen SS, Smith AT, Swanson PE, College of American Pathologists Pathology and Laboratory Quality Center Principles of analytic validation of immunohistochemical assays: Guideline from the College of American Pathologists Pathology and Laboratory Quality Center. Arch Pathol Lab Med. 2014;138:1432–1443. doi: 10.5858/arpa.2013-0610-CP. [DOI] [PubMed] [Google Scholar]
- 35.Canadian Association of Pathologists-Association canadienne des pathologistes National Standards Committee. Torlakovic EE, Riddell R, Banerjee D, El-Zimaity H, Pilavdzic D, Dawe P, Magliocco A, Barnes P, Berendt R, Cook D, Gilks B, Williams G, Perez-Ordonez B, Wehrli B, Swanson PE, Otis CN, Nielsen S, Vyberg M, Butany J. Canadian Association of Pathologists-Association canadienne des pathologistes National Standards Committee/Immunohistochemistry: best practice recommendations for standardization of immunohistochemistry tests. Am J Clin Pathol. 2010;133:354–365. doi: 10.1309/AJCPDYZ1XMF4HJWK. [DOI] [PubMed] [Google Scholar]
- 36.Goldstein NS, Hewitt SM, Taylor CR, Yaziji H, Hicks DG, Members of Ad-Hoc Committee On Immunohistochemistry Standardization Recommendations for improved standardization of immunohistochemistry. Appl Immunohistochem Mol Morphol. 2007;15:124–133. doi: 10.1097/PAI.0b013e31804c7283. [DOI] [PubMed] [Google Scholar]
- 37.Xu B, Alminawi S, Boulianne P, Shang YM, Downes MR, Slodkowska E. The impact of pre-analytical parameters on class II biomarkers by immunohistochemistry: concordance across four tissue processing protocols. Virchows Arch. 2021;478:985–993. doi: 10.1007/s00428-020-02960-z. [DOI] [PubMed] [Google Scholar]
- 38.Winkelman J, Voorwinde O, Ottens M, Beenackers A, Janssen L. Kinetics and chemical equilibrium of the hydration of formaldehyde. Chem Eng Sci. 2002;57:4067–4076. doi: 10.1016/S0009-2509(02)00358-5. [DOI] [Google Scholar]
- 39.Goldstein NS, Ferkowicz M, Odish E, Mani A, Hastah F. Minimum formalin fixation time for consistent estrogen receptor immunohistochemical staining of invasive breast carcinoma. Am J Clin Pathol. 2003;120:86–92. doi: 10.1309/QPHD-RB00-QXGM-UQ9N. [DOI] [PubMed] [Google Scholar]
- 40.Chen W, Frankel WL. A practical guide to biomarkers for the evaluation of colorectal cancer. Mod Pathol. 2019;32:1–15. doi: 10.1038/s41379-018-0136-1. [DOI] [PubMed] [Google Scholar]
- 41.Chafin D, Theiss A, Roberts E, Borlee G, Otter M, Baird GS. Rapid two-temperature formalin fixation. PLoS One. 2013;8:e54138. doi: 10.1371/journal.pone.0054138. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Libard S, Cerjan D, Alafuzoff I. Characteristics of the tissue section that influence the staining outcome in immunohistochemistry. Histochem Cell Biol. 2019;151:91–96. doi: 10.1007/s00418-018-1742-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
All data are available from the corresponding author upon reasonable request.