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[Preprint]. 2023 Nov 21:2023.11.20.567904. [Version 1] doi: 10.1101/2023.11.20.567904

Molecular regulation of retinal regeneration is context specific

Kevin Emmerich, John Hageter, Thanh Hoang, Pin Lyu, Abigail V Sharrock, Anneliese Ceisel, James Thierer, Zeeshaan Chunawala, Saumya Nimmagadda, Isabella Palazzo, Frazer Matthews, Liyun Zhang, David T White, Catalina Rodriquez, Gianna Graziano, Patrick Marcos, Adam May, Tim Mulligan, Barak Reibman, Meera T Saxena, David F Ackerley, Jiang Qian, Seth Blackshaw, Eric Horstick, Jeff S Mumm
PMCID: PMC10690167  PMID: 38045256

Abstract

Many genes are known to regulate retinal regeneration following widespread tissue damage. Conversely, genes controlling regeneration following limited retinal cell loss, akin to disease conditions, are undefined. Combining a novel retinal ganglion cell (RGC) ablation-based glaucoma model, single cell omics, and rapid CRISPR/Cas9-based knockout methods to screen 100 genes, we identified 18 effectors of RGC regeneration kinetics. Surprisingly, 32 of 33 previously known/implicated regulators of retinal tissue regeneration were not required for RGC replacement; 7 knockouts accelerated regeneration, including sox2, olig2, and ascl1a . Mechanistic analyses revealed loss of ascl1a increased “fate bias”, the propensity of progenitors to produce RGCs. These data demonstrate plasticity and context-specificity in how genes function to control regeneration, insights that could help to advance disease-tailored therapeutics for replacing lost retinal cells.

One sentence summary

We discovered eighteen genes that regulate the regeneration of retinal ganglion cells in zebrafish.

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