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. 2024 Jan 2;19(1):e0295205. doi: 10.1371/journal.pone.0295205

Effectiveness and safety of immunosuppressive regimens used as maintenance therapy in kidney transplantation: The CESIT study

Arianna Bellini 1,2,#, Marco Finocchietti 1,#, Alessandro Cesare Rosa 1, Maurizio Nordio 3, Eliana Ferroni 3, Marco Massari 4, Stefania Spila Alegiani 4, Lucia Masiero 5, Gaia Bedeschi 5, Massimo Cardillo 5, Ersilia Lucenteforte 6, Giuseppe Piccolo 7, Olivia Leoni 8, Silvia Pierobon 3, Stefano Ledda 9, Donatella Garau 9, Marina Davoli 1, Antonio Addis 1, Valeria Belleudi 1,*; on behalf of CESIT study group
Editor: Yavuz Ayar10
PMCID: PMC10760756  PMID: 38165971

Abstract

Maintenance immunosuppressive therapy used in kidney transplantation typically involves calcineurin inhibitors, such as tacrolimus or cyclosporine, in combination with mycophenolate or mechanistic target of rapamycin (mTORi) with or without corticosteroids. An Italian retrospective multicentre observational study was conducted to investigate the risk-benefit profile of different immunosuppressive regimens. We identified all subjects who underwent kidney transplant between 2009 and 2019, using healthcare claims data. Patients on cyclosporine and tacrolimus-based therapies were matched 1:1 based on propensity score, and effectiveness and safety outcomes were compared using Cox models (HR; 95%CI). Analyses were also conducted comparing mTORi versus mycophenolate among tacrolimus-treated patients. Patients treated with cyclosporine had a higher risk of rejection or graft loss (HR:1.69; 95%CI:1.16–2.46) and a higher incidence of severe infections (1.25;1.00–1.55), but a lower risk of diabetes (0.66;0.47–0.91) compared to those treated with tacrolimus. Among tacrolimus users, mTORi showed non-inferiority to MMF in terms of mortality (1.01;0.68–1.62), reject/graft loss (0.61;0.36–1.04) and severe infections (0.76;0.56–1.03). In a real-life setting, tacrolimus-based immunosuppressive therapy appeared to be superior to cyclosporine in reducing rejection and severe infections, albeit with an associated increased risk of diabetes. The combination of tacrolimus and mTORi may represent a valid alternative to the combination with mycophenolate, although further studies are needed to confirm this finding.

Introduction

Kidney transplantation is the preferred form of renal replacement therapy for the majority of patients with end-stage renal disease, offering known clinical and economic benefits over dialysis [1]. The central challenge in organ transplantation remains the suppression of allograft rejection; thus, immunosuppressive drugs play a pivotal role in achieving successful allograft function [2].

KDIGO Guidelines [3] recommend a maintenance immunosuppressive therapy that includes a combination of calcineurin inhibitor-CNI (cyclosporine-CsA or tacrolimus-TAC) and an antiproliferative agent (azathioprine or mycophenolate-MMF), with or without corticosteroids. Then, the mammalian target of rapamycin inhibitors-mTORi (everolimus or sirolimus), introduced in the Italian market recently, may be considered in combination with CNI, with or without corticosteroids as an alternative to antimetabolites. The National Institute for Health and Care Excellence (NICE) guidelines [4], published in 2017, identified TAC, MMF, and mTORi as possible options for maintenance therapy, emphasizing that limited conclusions can be drawn regarding clinical effectiveness differences among these options. To date, no consensus has emerged on the optimal drug combination in terms of safety and effectiveness for renal recipients; the most commonly prescribed therapy both in USA [5] and South-Eastern Europe [6] is a triple regimen with TAC, MMF, and corticosteroids.

In the past years, many studies have compared different agents, primarily within the same therapeutic category: CNIs, considered the cornerstone of immunosuppressive therapy post-kidney transplant, have been evaluated in several randomized controlled trials (RCTs) [7,8], with TAC emerging as a superior therapy for improving graft survival and reducing acute rejection. Furthermore, there might be advantages to using MMF over azathioprine, both in combination with TAC or CsA, for the prevention of rejection [9,10]; however, there are still some controversies in terms of efficacy and safety when considering MMF and mTORi [1113].

As such, previous evidence show how recommendations for immunosuppressive regimens are complex, due to the combination of multiple classes of drugs, and that the choice among different strategies involves trade-off between benefits and risks, considering various factors for both patients and donors.

In this context, there are limited data from observational studies analysing immunosuppressive strategies used in European countries after renal transplantation in clinical practice. Randomized Controlled Trials (RCTs) may not fully reflect real-world clinical practice for transplant patients, as the trial population, selected on the base of restrictive enrollment criteria, may not represent the broader population that will use these drugs and may not include patients with a wider range of ages and varying comorbidities. Moreover, real-world evidence may detect outcomes that require long-term follow-up (such as mortality, cancer, infection) and may highlight specific factors, not evident in RCTs, that can influence treatment choices and clinical outcomes (such as drug costs, adherence, switching).

This work was conducted within the context of the multiregional active pharmacovigilance CESIT project with the aim of improving knowledge about maintenance immunosuppressive therapies prescribed after solid organ transplantation [14]. Recently, the study group has published an article focused on the immunosuppressive drug utilization patterns among Italian patients who underwent kidney transplantation, showing that a considerable variability in dispensation patterns exists across years, regions, and centres in the country [15].

Along these lines the present work aims to compare the effectiveness and safety profile of the different immunosuppressive therapeutic regimens prescribed for renal recipients in four Italian regions between 2009 and 2019.

Methods

This study was approved by the Ethical Committee of the Local Health Authority Roma 1, the reference ethic committee of the Department of Epidemiology of Lazio (the CESIT coordinating centre), according to the current national law. Informed consent was obtained from each patient and/or the legally acceptable representative (LAR). The study was conducted in accordance to relevant guidelines and regulations.

The study is a retrospective multicentre observational cohort study, involving four Italian regions (Lombardy, Veneto, Lazio, Sardinia, covering a total population of over 20 million inhabitants) and based on data from regional healthcare claims and the national transplant information system (data were accessed in December 2021). National transplant information system is an infrastructure for the management of data related to the activity of the National Transplant Network, established and regulated by Italian Laws (n. 91 of April 1, 1999).

Specifically, regional analytical datasets pertaining to incident patients who underwent kidney transplants in the years 2009–19 were created with information extracted, through a common data model, from hospital information, pharmaceutical dispensation, mortality information systems and co-payment exemption registry. This was facilitated by a distributed analysis tool called The ShinISS [16].

Information on demographical and clinical characteristics of donor and receipt, available nationwide, was linked through a semi-deterministic matching. Details on this procedure are described elsewhere [14,15].

The study cohort was restricted to patients with no previous single or multi-organ transplantations; residing in the regions considered, surviving and with at least one CNI immunosuppressive dispensation during the 30 days post discharge (index period).

Patients were categorized based on the calcineurin inhibitor used during the index period in: either TAC or CsA. Among patients in the TAC group, a further distinction was made between MMF or mTORi combination. Patients under azathioprine treatment were excluded.

Each patient, starting from 30 days post discharge, was tracked until the occurrence of the study event (i.e., death) or the end of the study, for a maximum of five years, whichever came first. The considered outcomes were, mortality and transplant rejection/graft failure for effectiveness analysis, and the incidence of severe infections, cancer, diabetes, major adverse cardiovascular events (MACE) and statin use for safety analysis. Data on transplant rejection recorded in the national transplant information system was directly reported by clinicians upon histologically documented immunological cause leading to functional impairments of the transplanted organ.

The infection-related outcome focused solely on severe infections, defined as those necessitating hospitalization. The selected ICDIX-CM codes for this outcome are provided in the S1 Table, the choice of codes was based on some previous work published in the literature identifying the most relevant infections in the post-transplant population [1721].

For the main analysis was employed the intention-to-treat (ITT) approach. Patients receiving CsA- and TAC-based therapies during the index period, were matched 1:1 by propensity score (PS) nearest neighbor approach without replacement, with a caliper of 0.1 [22]. PS-matching was established considering region of residence, demographical characteristics of the donor and recipient (sex and age), type of donor, information on transplant (indication, dialysis history, panel reactivity antibodies, number of total and specific mismatch (Human leukocyte antigens-HLA-A, HLA-B, HLA-DR)), length of transplant hospitalization (prolonged hospitalization was defined as a length of stay equal to or greater than the 75th percentile of length of stay of all participants), year of discharge, clinical history in terms of comorbidity (hypertension, diabetes, cardio-cerebrovascular diseases, cancer, hematologic diseases, thyroid disorders) and comedication (anticoagulants, antianemics, antiplatelet, diuretics, statins). To assess covariate balance after PS-matching, the standardized mean difference (SMD) between groups, CsA or TAC users, was calculated.

In the risk-effectiveness analysis, only patients who were at risk of developing the outcome for the first time were considered; for each specific outcomes, patients with a prior history of the considered event were excluded. Treatment effectiveness and safety were estimated comparing outcomes between groups using a Cox model (hazard ratio-HR; 95%CI). Analyses were replicated by comparing mTORi vs MMF within patients in TAC therapy. Kaplan-Meier (KM) curves were presented and the cumulative risk was compared between groups using log-rank test.

To ensure the consistency of our results, an as-treated (AT) approach was applied. This involved censoring patients who interrupted treatment (by not refilling a prescription within 90 days after the expiration of the last prescription’s supply) or had a switch in immunosuppressive treatment during follow-up (e.g., patients in the TAC-based therapy group receiving a CsA prescription during follow-up were censored at the date of dispensation, and vice versa). The same procedure was applied for the mTORi vs MMF comparison.

Moreover, subgroup and sensitivity analyses were conducted. First, the effectiveness and safety profile was calculated after stratifying the cohort according to age class (18–29 years; 30–59 years; 60+ years). Secondly, HRs were calculated by adjusting for prednisone use, in order to eliminate potential disproportionality in the use of steroids in the two comparison groups. The potential role of previous infections and tumours in the donor was also examined. The cohort was restricted to years where this information was available, and the association between immunosuppressive regimen and outcomes was calculated adjusting for them. In fact, transplantation carries an unavoidable risk of transmission of malignant diseases, which may be heightened when the organ is from donors with a history or ongoing malignancy [23]. Additionally, diverse donor-infections, particularly viral infections including Cytomegalovirus (CMV), have been recognized in transplant recipients [24]. Finally, since delayed graft function (DGF) is a major obstacle for allograft survival, the primary analysis was also re-run after adjusting the model for DGF.

All analyses were performed using SAS Statistical Software version 9.4 (SAS Institute Inc., Cary, NC) and Statistical package R version 4.1.3.

Results

Overall, 5,318 residents who underwent kidney transplantation discharge in the four Italian regions under study during the period 2009–2019 were selected. After applying the selection criteria, 3,622 (68.1%) kidney recipients were considered, of which 787 (21.7%) were treated with CsA-based therapy and 2,835 (78.3%) with TAC-based therapy. Among patients in TAC-based therapy, 69.9% were in combination with MMF and 19.7% with mTORi (everolimus 90.2%–sirolimus 9.8%). Patients in triple therapy, CNI+MMF+Pred, were 416 in CsA group and 1,682 in the TAC group (Fig 1).

Fig 1. Flow chart of subject inclusion and exclusion criteria.

Fig 1

Although before PS-matching, considerable differences in several variables (e.g., region, type of donor, Panel reactive antibody (PRA), total number of HLA mismatches) were found between the comparison groups (Figs 2 and 3), after matching, the distribution of all baseline characteristics was well balanced with standardized difference ≤ 0.1 (Table 1). Following PS-matching, a total of 1,438 and 890 patients were included in the CsA-TAC and TAC+mTORi–TAC+MMF matched cohort, respectively. Notably, although only total mismatch was included in the PS-matching, specific mismatch data (HLA-A, HLA-B, HLA-DR) were also reported in the table and were found to be comparable among the groups.

Fig 2. Plot of standardized mean differences among TAC and CsA users before and after propensity score (PS) matching.

Fig 2

Note. CsA: Cyclosporine; TAC: Tacrolimus; mTORi: Mammalian target of rapamycin inhibitors; MMF: Mycophenolate; IR: Incidence Rate; PY: Person-years; HR: Hazard ratio; 95%CI: 95% confidence interval; MACE: Major adverse cardiovascular events.

Fig 3. Plot of standardized mean differences among mTORi and MMF users within patients treated with TAC before and after propensity score (PS) matching.

Fig 3

Note. CsA: Cyclosporine; TAC: Tacrolimus; mTORi: Mammalian target of rapamycin inhibitors; MMF: Mycophenolate; IR: Incidence Rate; PY: Person-years; HR: Hazard ratio; 95%CI: 95% confidence interval; MACE: Major adverse cardiovascular events.

Table 1. Baseline covariate and standardized mean difference (SMD) post Propensity Score (PS) comparison pairs: TAC vs CsA and mTORi vs MMF combined with TAC-based therapy.

  TAC CsA SMD TAC+MMF TAC+mTORi SMD
  723 723 446 446
  n % n %   n % n %  
Region
Veneto 85 11.8% 87 12.0% 0.021 174 39.0% 164 36.8% 0.048
Lombardy 563 77.9% 557 77.0% 130 29.1% 136 30.5%
Latium 75 10.4% 79 10.9% 108 24.2% 110 24.7%
Sardinia - 0.0% - 0.0% 34 7.6% 36 8.1%
Sex (recipient)                    
Female 237 32.8% 239 33.1% 0.006 140 31.4% 152 34.1% 0.057
Age (recipient)                    
mean 52.2 52.3 0.001 56.4 56.9 0.037
median (1° quartile-3° quarile) 54 (45–63) 55 (45–63) 58 50–65 59 50–66
BMI (recipient)                    
underweight 63 8.71% 55 7.6% 0.049 18 4.0% 17 3.8% 0.022
normal range 358 49.5% 371 51.3% 240 53.8% 244 54.7%
overweight 243 33.6% 237 32.8% 145 32.5% 144 32.3%
obese 59 8.2% 60 8.3% 43 9.6% 41 9.2%
Transplant hospital stay lenght                    
standard hospitalization (≤ 18 days) 529 73.2% 541 74.8% 0.038 375 84.1% 379 85.0% 0.025
prolonged hospitalization (>19 days) 194 26.8% 182 25.2% 71 15.9% 67 15.0%
Indications for transplant                    
Cystic nephropathies 132 18.3% 135 18.7% 0.049 97 21.7% 99 22.2% 0.037
Glomerular nephropathies 321 44.4% 304 42.0% 189 42.4% 181 40.6%
other 270 37.3% 284 39.3% 160 35.9% 166 37.2%
Donor                    
Deceased 705 97.5% 705 97.5% <0.001 443 99.3% 439 98.4% 0.085
Living 18 2.5% 18 2.5% 3 0.7% 7 1.6%
Sex (donor)                    
Female 331 45.8% 335 46.3% 0.011 200 44.8% 212 47.5% 0.054
BMI (donor)                    
underweight 29 4.0% 25 3.5% 0.032 11 2.5% 12 2.7% 0.035
normal range 347 48.1% 348 48.3% 182 40.9% 188 42.2%
overweight 247 34.3% 252 35.0% 176 39.6% 173 38.9%
obese 98 13.6% 96 13.3% 76 17.1% 72 16.2%
missing 2   2   1   1  
Transplant characteristics                    
Panel Reactivity Antibodies (PRA)                    
0–20 661 91.9% 662 91.8% 0.043 410 92.1% 414 93.0% 0.05
21–79 37 5.1% 38 5.3% 29 6.5% 24 5.4%
80+ 21 2.9% 21 2.9% 6 1.3% 7 1.6%
missing 4   2   1   1  
Total number of HLA mismatches                    
0 71 10.1% 57 8.1% 0.079 84 19.0% 86 19.6% 0.088
1–3 225 31.9% 243 34.5% 135 30.5% 135 30.8%
4–6 409 58.0% 405 57.4% 224 50.6% 218 49.7%
Number of HLA-A mismatches *                    
0 156 22.1% 152 21.6% 0.014 131 29.6% 139 31.7% 0.097
1–2 549 77.9% 553 78.4% 312 70.4% 300 68.3%
Number of HLA-B mismatches *                    
0 122 17.3% 110 15.6% 0.045 105 23.7% 116 26.4% 0.106
1–2 583 82.7% 595 84.4% 338 76.3% 323 73.6%
Number of HLA-DR mismatches *                    
0 178 25.2% 170 24.1% 0.026 146 33.0% 156 35.5% 0.101
1–2 527 74.8% 535 75.9% 297 67.0% 283 64.5%
Comorbidities and comedications                    
Charlson index                    
0–1 587 81.2% 590 81.6% 0.029 361 80.9% 367 82.3% 0.065
2 106 14.7% 107 14.8% 70 15.7% 61 13.7%
3+ 30 4.1% 26 3.6% 15 3.4% 18 4.0%
Cancer 45 6.2% 42 5.8% 0.017 40 9.0% 39 8.7% 0.008
Diabetes 158 21.9% 132 18.3% 0.09 100 22.4% 92 20.6% 0.044
Lipid metabolism disorders and obesity 37 5.1% 35 4.8% 0.013 31 7.0% 27 6.1% 0.036
Thyroid disorders 69 9.5% 69 9.5% <0.001 53 11.9% 63 14.1% 0.067
Hematological diseases 82 11.3% 103 14.2% 0.087 60 13.5% 64 14.3% 0.026
Anaemia 257 35.5% 251 34.7% 0.017 121 27.1% 124 27.8% 0.015
Cardio-cerebrovascular diseases 156 21.6% 158 21.9% 0.007 107 24.0% 112 25.1% 0.026
Hypertension 487 67.4% 478 66.1% 0.026 332 74.4% 325 72.9% 0.036
Respiratory disease 67 9.3% 63 8.7% 0.019 47 10.5% 53 11.9% 0.043
Diuretics 286 39.6% 288 39.8% 0.006 219 49.1% 203 45.5% 0.072
Anticoagulants 49 6.8% 53 7.3% 0.022 54 12.1% 58 13.0% 0.027
Antiplatelet 243 33.6% 229 31.7% 0.041 180 40.4% 175 39.2% 0.023
Epoetins 215 29.7% 199 27.5% 0.049 172 38.6% 197 44.2% 0.114
Statins 311 43.0% 347 48.0% 0.100 236 52.9% 233 52.2% 0.013

Note. TAC: Tacrolimus; CsA: Cyclosporine; mTORi: Mammalian target of rapamycin inhibitors; MMF: Mycophenolate SMD: Standardized Mean Differences.

*Variable not included in PS-matching procedure.

After matching, the median follow-up time was 4.2 years (1.9–5.0) for the cohort of TAC and CsA users and 3.4 years (1.6–5.0) for the cohort of TAC+MMF and TAC+mTORi users.

In the first comparison, HRs were estimated for study outcomes among individuals using CsA- versus those using TAC- based-therapy (Fig 4). Patients treated with CsA had higher risk of rejection/graft loss (HR:1.46; 95%CI 1.02–2.09) and an incidence of severe infections (HR1.28; 95%CI 1.01–1.61), and a lower risk of new-onset diabetes (HR:0.71; 95%CI 0.51–1.00) compared to those treated with TAC.

Fig 4. Effectiveness and safety of CsA vs TAC.

Fig 4

While, among TAC users, patients assuming mTORi had a higher risk of incident use of statins (HR:1.61; 95%CI 1.19–2.19) compared to those assuming MMF (Fig 5). Furthermore, there was a trend towards a reduced risk of rejection/graft loss (HR:0.61; 95%CI 0.36–1.04) and severe infections (HR:0.76; 95%CI:0.56–1.03) was noted in the mTORi group even if the result did not reach statistical significance.

Fig 5. Effectiveness and safety of mTORi vs MMF within patients treated with TAC.

Fig 5

Note. CsA: Cyclosporine; TAC: Tacrolimus; mTORi: Mammalian target of rapamycin inhibitors; MMF: Mycophenolate; PY: Person-years; HR: Hazard ratio; 95%CI: 95% confidence interval; MACE: Major adverse cardiovascular events.

The KM curves comparing the cumulative incidence of considered outcomes in the two groups were consistent with these findings (Figs 612 and 1319A–19G).

Fig 6. Kaplan-Meier curves for survival according to TAC or CsA.

Fig 6

Fig 12. Kaplan-Meier curves for statin use according to TAC or CsA.

Fig 12

A: Survival, B: Rejection/graft loss, C: Severe infections, D: Diabetes, E: Cancer, F: MACE, G: Statin use. Note. CsA: Cyclosporine; TAC: Tacrolimus.

Fig 13. Kaplan-Meier curves for survival according to mTORi or MMF within patients treated with TAC.

Fig 13

Fig 19. Kaplan-Meier curves for statin use according to mTORi or MMF within patients treated with TAC.

Fig 19

Note. mTORi: Mammalian target of rapamycin inhibitors; MMF: Mycophenolate.

Fig 10. Kaplan-Meier curves for cancer according to TAC or CsA.

Fig 10

Fig 11. Kaplan-Meier curves for MACA according to TAC or CsA.

Fig 11

Fig 16. Kaplan-Meier curves for diabetes according to mTORi or MMF within patients treated with TAC.

Fig 16

Fig 17. Kaplan-Meier curves for cancer according to mTORi or MMF within patients treated with TAC.

Fig 17

Fig 18. Kaplan-Meier curves for MACA according to mTORi or MMF within patients treated with TAC.

Fig 18

The rejection/graft loss outcome curves (Fig 7) initially overlapped within the first year of observation and then separated with a progressive increase in the distance between the two, with TAC-users demonstrating a lower risk of rejection/graft loss. Similarly, Fig 8 shows that the risk of severe infections between TAC and CsA users during the first year of follow-up was comparable, while the cumulative risk in the following years was higher for CsA users. Fig 9 illustrates that within the first year of follow-up, there was a very early separation of the KM curves that remained relatively constant for the rest of the observation period. When considering mTORi+TAC and MMF+TAC groups, the KM curves referring to the mortality outcome showed better survival for TAC+mTORi users in the first three years, although this did not reach statistical significance, the curves reversed after the third year of observation (Fig 13). Fig 14 concerning rejection/graft loss shows that after about one year of observation, a separation between the two curves appeared, with a lower incidence of the outcome in TAC+mTORi users, and this difference was maintained throughout the follow-up period without reaching statistical significance. Similarly, Fig 15, focused on infections, reveals that the initial distance found between the two curves, with a lower occurrence of the outcome in TAC+mTORi users, decreased after the first year of observation and again did not reach significance. Also, KM curves for new-onset diabetes and statins use outcomes separated early, within the first six months of treatment initiation.

Fig 7. Kaplan-Meier curves for rejection/graft loss according to TAC or CsA.

Fig 7

Fig 8. Kaplan-Meier curves for severe infections according to TAC or CsA.

Fig 8

Fig 9. Kaplan-Meier curves for diabetes according to TAC or CsA.

Fig 9

Fig 14. Kaplan-Meier curves for rejection/graft loss according to mTORi or MMF within patients treated with TAC.

Fig 14

Fig 15. Kaplan-Meier curves for severe infections according to mTORi or MMF within patients treated with TAC.

Fig 15

Different subgroup and sensitivity analyses were performed to verify the robustness of the observed results (Table 2).

Table 2. Results of subgroup analysis and sensitivity analyses in the two comparison groups CsA vs TAC and mTORi vs MMF within patients treated with TAC.

    Mortality Rejection/Graft loss Severe infections Diabetes Cancer MACE Use of statins
HR (95%CI)
CsA vs TAC
As treated (AT approach) 1.16 (0.71–1.91) 1.47 (0.96–2.26) 1.26 (0.99–1.61) 0.65 (0.46–0.94) 1.10 (0.74–1.64) 1.36 (0.94–1.95) 1.10 (0.86–1.42)
Age              
18–29 1.04 (0.47–2.28) 1.70 (1.05–2.76) 1.17 (0.86–1.61) 0.70 (0.43–1.13) 0.95 (0.51–1.76) 0.98 (0.61–1.60) 1.17 (0.88–1.57)
30–59 1.01 (0.44–2.29) 1.63 (0.99–2.66) 1.11 (0.81–1.53) 0.70 (0.43–1.14) 0.92 (0.48–1.77) 0.96 (0.59–1.55) 1.13 (0.83–1.53)
60+ 0.94 (0.56–1.58) 1.38 (0.77–2.46) 1.27 (0.88–1.84) 0.60 (0.38–0.97) 1.11 (0.69–1.77) 1.27 (0.80–2.02) 0.90 (0.62–1.32)
Prednisone use adjustment 1.05 (0.68–1.61) 1.49 (1.04–2.13) 1.28 (1.01–1.62) 0.71 (0.51–1) 1.14 (0.79–1.64) 1.18 (0.85–1.64) 1.08 (0.86–1.36)
Donor infections adjustment - - 1.27 (1.01–1.61) - - - -
Donor cancer adjustment - - - - 1.14 (0.79–1.64) - -
DGF adjustment - 1.50 (1.04–2.14) - - - - -
                 
HR (95%CI)
mTORi vs MMF
As treated (AT approach) 0.70 (0.39–1.26) 0.24 (0.10–0.55) 0.63 (0.44–0.90) 1.45 (0.91–2.32) 0.80 (0.43–1.50) 0.82 (0.48–1.39) 1.87 (1.33–2.64)
Age              
18–29 0.81 (0.33–1.97) 0.47 (0.23–0.99) 0.67 (0.42–1.07) 1.00 (0.58–1.73) 0.71 (0.31–1.59) 2.02 (0.95–4.29) 1.64 (1.10–2.45)
30–59 0.83 (0.34–2.01) 0.44 (0.20–0.93) 0.69 (0.43–1.11) 0.98 (0.56–1.73) 0.73 (0.32–1.64) 2.07 (0.97–4.40) 1.68 (1.13–2.51)
60+ 0.97 (0.57–1.67) 0.87 (0.38–2.03) 0.76 (0.51–1.14) 1.80 (0.93–3.46) 1.11 (0.62–2.01) 0.94 (0.55–1.61) 1.50 (0.92–2.45)
Prednisone use adjustment 1.01 (0.63–1.61) 0.58 (0.33–1.00) 0.74 (0.54–1.02) 1.33 (0.87–2.03) 1.02 (0.63–1.66) 1.22 (0.78–1.90) 1.78 (1.30–2.46)
Donor infections adjustment - - 0.77 (0.57–1.05) - - - -
Donor cancer adjustment - - - - 0.98 (0.61–1.57) - -
DGF adjustment - 0.61 (0.36–1.05) - - - - -

Note. TAC: Tacrolimus; CsA: Cyclosporine; mTORi: Mammalian target of rapamycin inhibitors; MMF: Mycophenolate; HR: Hazard ratio; 95%CI: 95% confidence interval MACE: Major adverse cardiovascular events; DGF: Delayed Graft Function.

Overall, results from the primary analysis did not change with the as-treated analytical approach; however, when considering the second comparison, the precision of the estimates was lower for rejection/graft loss (HR: 0.58; 95%CI 0.27–1.27) and severe infections (HR:0.82; 95%CI 0.58–1.16). In this context, it is interesting to report that among TAC and CsA users, the percentages of patients switching to the other CNIs were 5.7% and 9.3% respectively, while mTORi was replaced by MMF more frequently with respect to switching in the other direction (36.5% vs 9.9%) (Table 3).

Table 3. Switching distribution among TAC and CsA users and mTORi and MMF users within patients treated with TAC.

TAC CsA TAC+MMF TAC+mTOR
Switch N (%) 41 (5.7%) 67 (9.3%) 44 (9.9%) 163 (36.5%)
Time to first switch in months 12 17 14 12
Switch back N (%) 4 (9.7%) 5 (7.4%) 13 (29.5%) 33 (20.2%)
Time to switch back in months 5 3 3 7

Note. CsA: Cyclosporine; TAC: Tacrolimus; mTORi: Mammalian target of rapamycin inhibitors; MMF: Mycophenolate.

When the cohort was stratified by age, the comparison between TAC and CsA did not show important differences from the main analysis, but statistical significance was not reached for reject/graft loss in the subgroup aged 60+ and for new-onset diabetes in the 18–29 years and 30–59 years groups for both outcomes all the HRs maintained their sign as in our original model.

When considering the comparison between mTORi and MMF, results showed that in the two youngest age groups mTORi users were at significantly lower risk of rejection/graft loss and at higher risk of using statins, while statistical significance was not reached for the oldest subgroup. Furthermore, there was a tendency towards a higher risk of MACE for mTORi users aged 18–29 years and 30–59 years, with HRs almost reaching statistical significance, on the same time in the oldest subgroup HR for MACE was less than 1; this may indicate that particular attention should be paid in younger patients when using mTORi.

The proportions of patients assuming prednisone in combination with TAC and CsA were comparable (TAC vs CsA: 74.6% vs 73.3%); instead among mTORi-users the association with prednisone was higher than among MMF-users (TAC+MMF vs TAC+mTORi: 84.8% vs 65.9%), this did not translate into a different HR estimate when adjusting the model for prednisone-use.

Further, the role that donor’s previous infections and malignancies had in outcomes occurrence was explored: all combinations of therapies considered, were comparable in terms of frequency distribution of donor’s infections (TAC vs CsA: 15.5% vs 16.2% pvalue: 0.715; TAC+MMF vs TAC+mTORi: 20.1% vs 15.7% p-value: 0.090) and cancer (TAC vs CsA: 2.4% vs 4.1% pvalue: 0.072; TAC+MMF vs TAC+mTORi: 5.7% vs 3.7% p-value: 0.159); also, no difference emerged in HR estimates after adjusting for both infections and cancer.

Finally, the adjustment of the model for DGF, did not result substantially in different estimated risks of rejection/graft loss (Table 2).

Discussion

To the best of our knowledge, this is the largest multicentre observational study conducted in Europe comparing the effectiveness and safety profile of different immunosuppressive therapeutic regimens prescribed after kidney transplant.

The present work showed that in kidney recipients, TAC-based immunosuppressive therapy was significantly superior to CsA-based therapy in reducing rejection/graft loss and severe infections. At the same time, TAC was associated with a significantly higher risk of post transplantations diabetes mellitus compared to CsA. The combination of TAC with mTORi resulted in a higher risk of statin use compared to TAC and MMF.

The first result aligns with numerous recently published RCTs and meta-analyses evaluating TAC compared to CsA [2529]. For instance, Ekberg and colleagues compared four immunosuppressive regimens (standard dose CsA, low dose CsA, low dose TAC and low dose Sirolimus) in 1,645 renal-transplant recipients; this study showed that the regimen including TAC was superior to all other treatment arms in terms of biopsy-proven acute rejection (BPAR) and allograft survival. The incidence of BPAR in the TAC group was approximately half compared to that in the low dose and standard dose CsA groups [25]. Another randomized open study, conducted in 50 transplant centres across seven European countries, showed that a composite endpoint consisting of graft loss, patient death and BPAR occurred more frequently in CsA patients than in TAC patients (42.8% with CsA and 25.9% with TAC; P<0.001) over a 2 years follow-up period [26]. Finally, three meta-analyses, including 30, 21 and 27 RCTs respectively, compared the efficacy of TAC with CsA as primary therapy after kidney transplantation, concluding that treating patients with TAC resulted in a substantial reduction in graft loss and acute rejection [7,8,30].

As far as we know, there is one recent study published in Brazil in 2020 that obtained results almost contrary to ours; the cohort study conducted by Gomes et colleagues, in fact, revealed better long-term outcomes (mortality rate, graft survival and re-transplantation) for CsA-based regimens versus TAC-based therapy [31].

Furthermore, in accordance with the evidence from literature [7,3235] the higher risk of new-onset diabetes after transplantation (NODAT) associated with TAC-based regimens is particularly relevant. This is especially noteworthy since the two groups were comparable in terms of corticosteroid use (TAC vs CsA: 74.6% vs 73.3%) and since they were matched by PS considering different risks factors associated with the onset of NODAT, such as BMI.

In our cohort, even though CsA users had higher risk of rejection/graft loss, they did not show an increased risk of mortality; this can be explained with the possibility for kidney recipients of returning in dialysis if a transplant fails.

On balance, when considering the use on CNIs, our work suggests that, as already emerged in published evidence [4,36], clinicians should prefer TAC as primary immunosuppressive therapy in kidney recipients because of its better risk-benefit profile. They may consider CsA as an alternative in patients with significant risk factors for diabetes. It also highlighted the fact that, during the study period, clinical practice in the four regions under study seemed to be in contrast with these previous findings, since CsA is still prescribed in a significant percentage of cases.

Regarding the second comparison, previous studies have already tried to establish benefits and risks associated with the use of mTORi in immunosuppressive regimens. Different studies investigated the use of mTORi in substitution of CNI [3739] or in association with low doses of CNI as a kidney-sparing strategy [40,41]. Lower rates of acute rejection and renal disfunction have been demonstrated in these cases when compared to regimens with standard doses of CNI; however, when regimens including mTORi have been compared to the combination of MMF and CNI, results were contradictory [42,43].

In our cohort, the combination consisting in TAC and mTORi showed good results in terms of efficacy and safety when compared to the classical regimen based on TAC and MMF, with the exception of the use of statins, which was higher in the mTORi group. These results are consistent with those obtained in a recent randomized open-label two-arm study, the TRANSFORM trial [44], demonstrating that a regimen of everolimus with reduced TAC was non-inferior to MMF plus conventional CNI for a binary end point assessing immunosuppressive efficacy and preservation of graft function in kidney transplant patients at mild-to-moderate immunologic risk. Cucchiari and collegues in an observational study published in 2019 [45] confirmed and extended these findings, also considering high immunological risk recipients excluded from the trial. In those patients, results were even better in terms of rejection and graft function.

In terms of safety, the fact that everolimus has been associated with a decrease of CMV [46] infection represents a possible explanation for the lower rate of infections occurring in our cohort in the mTORi group compared to the MMF group (Fig 3B).

The observed risk of initiating statin therapy, along with existing body of evidence suggesting the role of mTORi in lipid homeostasis leading to hypercholesterolemia and hypertriglyceridemia [43,47], adds a noteworthy dimension to our findings. Despite this side-effect, mTORi appeared to contribute to the stabilization of the atherosclerotic plaque [48,49] and the reduction of left-ventricular hypertrophy [50]. This could potentially explain why the higher use of statins in our cohort did not translate into an increased risk of cardiovascular events. Furthermore, the KM estimate of the incident use of statins (Fig 5G) showed a statistically significant difference between the two curves from the beginning of the follow-up. This suggests that clinicians may have chosen to prescribe these medications as a preventive measure due to the well-known collateral effects of mTORi.

On the other hand, even if previous evidence highlighted the anti-neoplastic effects of mTORi [5054], this aspect did not emerge from our analysis. This could be attributed to the relatively short follow-up duration (maximum of 5 years). It is also noteworthy that the use of mTORi has been associated with high discontinuation rate [5557], representing a significant challenge in the real-world use of this class of drugs, which have often proven to be badly tolerated. Various studies [58,59] demonstrated the association between mTORi treatment and impaired wound healing and cutaneous adverse events. These factors could become reasons for discontinuing the therapy, either due to the seriousness of some of these events or because of their social or functional impact. In our analysis, we only included major events that had required the use of health care services, it is possible that we did not account for minor side effects that may have contributed to therapy discontinuation and difficulties in observing some long-term outcomes in real life setting. In the cohort, the switching rate for mTORi group was higher than that for the MMF group (Table 3), and, interestingly, in 20.2% of cases we observed a switch back to the previous therapy. The consistency between ITT and AT analyses suggested that the switching rates did not change the risks of outcomes occurrence in the group considered. However, further studies should be conducted focusing on this aspect and taking into consideration minor collateral effects that may impact the medication management and patients’ quality of life.

The main strength of this study lies in the availability of data on immunosuppressive dispensation from four regions, which are representative of Northern, Central and Southern Italy.

However, the study has some limitations. Firstly, being an observational study based on administrative data, we only considered drugs reimbursed by the healthcare system and there might be some imprecisions due to prescriptions from outside the region or privately purchased drugs. It is also possible an overestimation of drug use in case the drug is claimed at the pharmacy, but not actually taken by patients. However, the immunosuppressant medications considered in the analysis are rather expensive and the proportion of patients purchasing them privately can be considered negligible. Prednisone, which has a much lower cost and can be prescribed for a wide range of indications, may represent an exception to these considerations. To address this limitation, a sensitivity analysis was performed, and after adjusting for corticosteroids use, no different results emerged.

The administrative nature of the data also requires us to take into consideration the possibility of clinical unobserved factors influencing outcomes; although residual confounding may be present, the record linkage of data coming from the Italian national transplant centre (CNT) and the large cohort enrolled contribute to reinforcing the observed evidence. Nevertheless, further studies with access to more specific clinical data would enable the investigation of interesting aspects; for instance, it would be important to examine renal function at baseline and post-transplantation as an indicator of effectiveness that can assist clinicians in evaluating the prognosis.

Additionally, since the study relies on medication dispensation data where dosage is lacking, this information has not been taken into consideration. However, different minimization strategies can be applied to reduce the dosage of immunosuppressive maintenance drugs in order to limit complications associated with them, especially CNIs [60]. Since the study involved a long monitoring period, it’s plausible to assume that the different treatment groups encompassed patients assuming both low and high dosage therapies. This may have introduced a bias that may have impacted the incidence of certain outcomes (such as diabetes and infections); therefore, it would be worthwhile to conduct further studies to explore the issue of dosing and thus providing insights into the potential risks and benefits of different therapy combination at various dosages.

Further, we did not consider the use of Belatacept that was identified in NICE guidelines [4] as a possible option for maintenance therapy in kidney recipients; in fact, in Italy the use of this drug is limited to hospital settings and there is no information in our databases on medications used in hospitals.

Another limitation concerns induction therapy that was not assessed, due to the lack of this information in our databases. However, we expect that maintenance immunosuppression may play the major role in long-term outcomes considered in our study.

In conclusion, this study found that in a real-world setting, TAC-based immunosuppressive therapy has a significantly better effectiveness and safety profile when compared to CsA; particular attention should be paid to patients with medical history or risk factors for diabetes. The combination of TAC and mTORi may represent a valid alternative to the association of TAC and MMF, even if it is associated with an increased risk of incident use of statins. Further studies on this topic should be conducted to better define the role in therapy and prescribing recommendations of mTORi with respect to MMF. These results, on the one hand, may support policy makers and prescribers in clinical practice assisting them in choosing among different possible combinations as first-line therapy based on patients’ characteristics; and, on the other hand, they also highlight the importance of better monitoring of different treatments to remodulate them based on emerging issues.

Supporting information

S1 Table. Codes ICDIX-CM for infections.

(DOCX)

Acknowledgments

CESIT study group: Alessandro C. Rosa, Marco Finocchietti, Francesca R Poggi, Maria Lucia Marino, Arianna Bellini, Claudia Marino, Ursula Kirchmayer, Nera Agabiti, Marina Davoli, Antonio Addis, Valeria Belleudi (Department of Epidemiology, Lazio Regional Health Service); Marco Massari, Stefania Spila Alegiani (Pharmacoepidemiology Unit, National Centre for Drug Research and Evaluation, Istituto Superiore di Sanità, Rome); Lucia Masiero, Andrea Ricci, Bedeschi Gaia, Francesca Puoti, Vito Sparacino, Pamela Fiaschetti, Silvia Trapani, Alessandra Oliveti, Daniela Peritore, Massimo Cardillo (Italian National Transplant Centre–Istituto Superiore di Sanità); Lorella Lombardozzi (Lazio Region); Silvia Pierobon, Eliana Ferroni, Maurizio Nordio, Manuel Zorzi (Veneto Region); Martina Zanforlini, Arianna Mazzone, Michele Ercolanoni, Giuseppe Piccolo, Andrea Angelo Nisic, Olivia Leoni (Lombardy Region); Stefano Ledda. Paolo Carta, Donatella Garau (Sardinia Region); Valentina Ientile, Luca L’Abbate (Messina University), Matilde Tanaglia, Gianluca Trifirò, Ugo Moretti (Verona University); Ersilia Lucenteforte (Pisa University).

Data Availability

The data that support the findings of this study are available from the Italian regions participating to CESIT study but restrictions apply to the availability of these data, which were used under license (as by third-party sources) for the current study, and so are not publicly available. However, data are available with permission of Italian regions, which are the data owner. The non-author contact information to which data requests may be sent is: project.cesit@gmail.com.

Funding Statement

This work was supported by the Italian Medicines Agency in the context of the multiregional pharmacovigilance project (AIFA 2012–2014: Comparative Effectiveness and Safety of Immunosuppressive Drugs in Transplant patients—CESIT project). Grant code: J85I2000009005 (CUP). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Yavuz - Ayar

11 Aug 2023

PONE-D-23-20920Effectiveness and safety of immunosuppressive regimens used as maintenance therapy in kidney transplantation: the CESIT study.PLOS ONE

Dear Dr. Belleudi,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Sep 25 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

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If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

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We look forward to receiving your revised manuscript.

Kind regards,

Yavuz - Ayar

Academic Editor

PLOS ONE

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Best regards

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: I Don't Know

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The manuscript by Bellini and colleagues reports the results of an observational (registry) study on the use of CNI based maintenance therapies in kidney transplant recipients, using propensity score matching.

Their results confirm in a large cohort included over a 10 years period, important findings such as the superiority of tacrolimus as compared to CsA for graft outcomes and lower risk of diabetes as well as higher risk of dyslipidemia as defined by statin use for the combination tac+mTORi as compared to tac+MMF. The abstract mentions a potential protective effect of mTORi+Tac as compared to MMF+Tac that do not reach statistical significance and is not supported by RCTs (eg Transform).

Sensitivity analysis are performed accounting for meaningful clinical variables.

Major:

The nature of registry data significantly limits granularity of the analysis, being the most important outcome a combination of rejection/graft loss.

Can the author clarify the definition of this variable? Is rejection reliably recorded (Biopsy?discharge diagnosis? Receiving rescue treatment?) in this registry? In case not, only graft loss might be a more accurate outcome since it depends on clear events such as starting dialysis or retrasplantation. If, on the other hand, rejection IS reliably recorded, splitting the outcome in two might be interesting since graft loss is of course not related to alloimmune events in a large percentage of cases.

Minor:

Were recipients of other solid organ transplants excluded from the analysis?

It would be useful to report mean or median follow-up time of the cohort.

In line 119 page 5 ,HLA-DL--> DR?

Is the outcome “diabetes” restricted to post transplant? Please define in methods.

Does Table 2 show Hazard ratios? the note has maybe some incongruence with the table or are SMD shown here?

Reviewer #2: I thoroughly reviewed the paper and found it to be both interesting and pertinent. Despite the abundance of existing literature on the topic, it's crucial to acknowledge potential variations in data across different locations. Assessing the effectiveness and safety of various immunosuppressive regimens used in kidney transplantation adds significant value to the overall comprehension of the subject.

My comments and questions are as follows:

1) Page 2 line 39 - Abstract: The supposed benefit of mTORi usage, as it was not statistically significant, should not be stated in the abstract as a certainty. It could be described as non-inferiority instead.

2) Methods: Elaborate further on the specific parameters used to classify infections as severe, and provide a detailed description of the methodology employed to gather the necessary data for conducting the effectiveness analysis in relation to these severe infections.

3) Methods: why wasn't the type of donor considered in PS-matching?

4) Methods: Elaborate further on the specific parameters used to classify transplant hospital length as standard or prolonged

5) Page 5 line 119 - Correct spelling : length of transplant

6) Page 7 line 164 - Correct spelling : HLA- DR

7) Missing Explanation for Certain Adjustments: While the article adjusts for infections, malignancies, and delayed graft function (DGF), it might be helpful to provide a brief rationale for these adjustments and their relevance in the context of the study.

8) Graphics - enhance the resolution and select colors more effectively to improve visual clarity.

9) Results: Explore in the text information obtained from graphs 5A-F.

10) Page 15 line - Correct spelling : prednisone-use

11) The study fails to address a crucial aspect, namely medication dosages. Since the study relies on medication dispensation data, a substantial bias arises concerning the dosages of calcineurin inhibitors and mTORi. Considering the decade-long selection and monitoring period, it's reasonable to assume that patients in the tacrolimus group encompassed both low and high dosage users. This differentiation could significantly impact outcomes like the incidence of NODAT. Furthermore, distinguishing dosage variations in the tacrolimus mTORi/MPS -associated groups could provide more accurate insights into the actual extent of the potential benefits of mTORi usage. I recommend a deeper exploration of this bias within the article's limitations section.

While the study provides valuable insights into immunosuppressive regimens in kidney transplantation, it has some notable gaps. The lack of details about medication dosages, potential confounding factors, and inherent biases in retrospective data are concerning. Additionally, the interpretation of results and the discussion could have more critically addressed limitations and potential clinical implications of the findings. This could strengthen the validity and clinical applicability of the study's conclusions.

**********

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Reviewer #1: No

Reviewer #2: No

**********

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PLoS One. 2024 Jan 2;19(1):e0295205. doi: 10.1371/journal.pone.0295205.r002

Author response to Decision Letter 0


19 Sep 2023

Reviewer #1: The manuscript by Bellini and colleagues reports the results of an observational (registry) study on the use of CNI based maintenance therapies in kidney transplant recipients, using propensity score matching.

Their results confirm in a large cohort included over a 10 years period, important findings such as the superiority of tacrolimus as compared to CsA for graft outcomes and lower risk of diabetes as well as higher risk of dyslipidemia as defined by statin use for the combination tac+mTORi as compared to tac+MMF. The abstract mentions a potential protective effect of mTORi+Tac as compared to MMF+Tac that do not reach statistical significance and is not supported by RCTs (eg Transform).

Sensitivity analysis are performed accounting for meaningful clinical variables.

Major:

The nature of registry data significantly limits granularity of the analysis, being the most important outcome a combination of rejection/graft loss.

Can the author clarify the definition of this variable? Is rejection reliably recorded (Biopsy?discharge diagnosis? Receiving rescue treatment?) in this registry? In case not, only graft loss might be a more accurate outcome since it depends on clear events such as starting dialysis or retrasplantation. If, on the other hand, rejection IS reliably recorded, splitting the outcome in two might be interesting since graft loss is of course not related to alloimmune events in a large percentage of cases.

We thank the reviewer for the comment. Information on transplant rejection was detected by the Transplant Information System an infrastructure for the management of data related to the activity of the National Transplant Network, established and regulated by Italian Laws (n. 91 of April 1, 1999). The SIT collecting data on donation, allocation and transplantation of organ including transplanted organ quality, through SIT it is possible to ensure transparency and traceability of the donation, retrieval and transplantation processes. Specifically, data on organ rejection is detected directly by clinicians following a finding of impairment of transplanted organ function due to histologically documented immunological causes. Furthermore, data quality qudits and checks are frequently performed. We added these details in the method section.

Minor:

Were recipients of other solid organ transplants excluded from the analysis?

Yes, we excluded multi-organ transplant recipients. We added details on this point in the method section and in the flow-chart (Figure 1). More details about the selection of the cohort can be found in the previous paper:

Belleudi V, Rosa AC, Finocchietti M, Poggi FR, Marino ML, Massari M,

Spila Alegiani S, Masiero L, Ricci A, Bedeschi G, Puoti F, Cardillo M, Pierobon S, Nordio M, Ferroni E, Zanforlini M, Piccolo G, Leone O, Ledda S, Carta P, Garau D, Lucenteforte E, Davoli M and Addis A, CESIT Study Group (2022), An Italian multicentre distributed data research network to study the use, effectiveness, and safety of immunosuppressive drugs in transplant patients: Framework and perspectives of the CESIT project. Front. Pharmacol. 13:959267.

It would be useful to report mean or median follow-up time of the cohort.

We appreciate the reviewer's suggestion, we added this information in the result section.

In line 119 page 5 ,HLA-DL--> DR?

You are right we have corrected the typo

Is the outcome “diabetes” restricted to post transplant? Please define in methods.

As reported in the methods section “for each outcome, only patients who were at risk of developing the outcome for the first time were considered” (Page 6). To clarify this point, we modified the manuscript by referring to new-onset diabetes.

Does Table 2 show Hazard ratios? the note has maybe some incongruence with the table or are SMD shown here?

Yes, Table 2 shows HR. To clarify this point, we added description in the table.

Reviewer #2: I thoroughly reviewed the paper and found it to be both interesting and pertinent. Despite the abundance of existing literature on the topic, it's crucial to acknowledge potential variations in data across different locations. Assessing the effectiveness and safety of various immunosuppressive regimens used in kidney transplantation adds significant value to the overall comprehension of the subject.

My comments and questions are as follows:

1) Page 2 line 39 - Abstract: The supposed benefit of mTORi usage, as it was not statistically significant, should not be stated in the abstract as a certainty. It could be described as non-inferiority instead.

We agree with you. We modified the abstract following your suggestion.

2) Methods: Elaborate further on the specific parameters used to classify infections as severe, and provide a detailed description of the methodology employed to gather the necessary data for conducting the effectiveness analysis in relation to these severe infections.

The infection-related outcome was based on only severe infections, which were defined as those resulting in hospitalization. We have included in S1 Table the ICD-IXCM codes selected for this outcome and in References section some papers on the basis of which we made the choice of codes.

3) Methods: why wasn't the type of donor considered in PS-matching?

We apologize to you, we forgot to indicate this in the list of variables considered, although we had included it in PS-matching (as shown in Figure 2 A/B). We corrected the method section.

4) Methods: Elaborate further on the specific parameters used to classify transplant hospital length as standard or prolonged

Prolonged hospitalization was defined as a length of stay equal to or greater than the 75th percentile of length of stay of all participants

5) Page 5 line 119 - Correct spelling : length of transplant

You are right we have corrected the typo

6) Page 7 line 164 - Correct spelling : HLA- DR

You are right we have corrected the typo

7) Missing Explanation for Certain Adjustments: While the article adjusts for infections, malignancies, and delayed graft function (DGF), it might be helpful to provide a brief rationale for these adjustments and their relevance in the context of the study.

Thank you for your suggestion, we have modified the text and the bibliography by inserting a brief rationale regarding adjustments and by adding some previous work on which we had based our choice of adjustments

8) Graphics - enhance the resolution and select colors more effectively to improve visual clarity.

We modified resolution and colors to improve the graphics. We are available to consider further changes with the editor if the paper will be accepted for publication.

9) Results: Explore in the text information obtained from graphs 5A-F.

We added a commentary paragraph on graphs in the result section.

10) Page 15 line - Correct spelling: prednisone-use

You are right we have corrected the typo

11) The study fails to address a crucial aspect, namely medication dosages. Since the study relies on medication dispensation data, a substantial bias arises concerning the dosages of calcineurin inhibitors and mTORi. Considering the decade-long selection and monitoring period, it's reasonable to assume that patients in the tacrolimus group encompassed both low and high dosage users. This differentiation could significantly impact outcomes like the incidence of NODAT. Furthermore, distinguishing dosage variations in the tacrolimus mTORi/MPS -associated groups could provide more accurate insights into the actual extent of the potential benefits of mTORi usage. I recommend a deeper exploration of this bias within the article's limitations section. While the study provides valuable insights into immunosuppressive regimens in kidney transplantation, it has some notable gaps. The lack of details about medication dosages, potential confounding factors, and inherent biases in retrospective data are concerning. Additionally, the interpretation of results and the discussion could have more critically addressed limitations and potential clinical implications of the findings. This could strengthen the validity and clinical applicability of the study's conclusions.

Thank you for your comment, this is indeed an important point of the limitations of the study and an important element to be explored with future investigations, we have included a sentence in the limitations section to emphasise the lack of consideration of dose and the possible bias concerning this.

Attachment

Submitted filename: Answers_Reviewers_11092023.docx

Decision Letter 1

Yavuz - Ayar

12 Oct 2023

PONE-D-23-20920R1Effectiveness and safety of immunosuppressive regimens used as maintenance therapy in kidney transplantation: the CESIT study.PLOS ONE

Dear Dr. Belleudi,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Nov 26 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Yavuz - Ayar

Academic Editor

PLOS ONE

Additional Editor Comments:

Dear Author/s

Greetings

After the evaluation made by reviewers, a major revision decision was made for the article.

Best regards

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #3: All comments have been addressed

Reviewer #4: All comments have been addressed

Reviewer #5: (No Response)

Reviewer #6: (No Response)

Reviewer #7: (No Response)

Reviewer #8: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #3: Partly

Reviewer #4: Yes

Reviewer #5: Yes

Reviewer #6: Yes

Reviewer #7: Yes

Reviewer #8: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #3: Yes

Reviewer #4: I Don't Know

Reviewer #5: Yes

Reviewer #6: Yes

Reviewer #7: Yes

Reviewer #8: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

Reviewer #6: Yes

Reviewer #7: Yes

Reviewer #8: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: No

Reviewer #6: Yes

Reviewer #7: Yes

Reviewer #8: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #3: The manuscript evaluated the effectiveness and safety by comparison between cyclosporine and tacrolimus-based therapies, Tacrolimus + mTORi and Tacrolimus + MMF in kidney transplant recipients and reported the results of real-world data on the use of CNI based maintenance therapies in kidney transplant recipients.

1.It would be very important to report baseline renal function ( serum creatinine ,GFR or eGFR ) and urine protein of transplant kidney.

2.The outcome considered in the manuscript were mortality and transplant reject/graft failure for effectiveness analysis, and incidence of severe infections, cancer, diabetes and statin use for safety analysis. The outcome should consider renal function progression. ≥50% decline in eGFR should be added to the primary outcome for effectiveness analysis.

Reviewer #4: Dear authors,

I think the revised form of the manuscript is quite improved. I will hava e few additional comments.

The use of mTOR inhibitors as part of initial maintenance therapy is usually limited by early posttransplant complications (delayed allograft function, poor wound healing, and an increased incidence of lymphoceles) associated with these agents. Did you have any data about this? Were mTOR inhibitors used in these patients as a part of initial maintenance therapy?

Were the ones under the treatment of azathioprine excluded?

Lack of data about induction treatment is an important limitation. Data whether target levels of CNI’s were reached or not was also lacking.

Did you know BK virus infection prevalance in these different groups?

P64 line 99 LAR should be explained. (legally acceptable representative)

Table 1 “sovrappeso” should be corrected.

Best regards

Reviewer #5: This is an interesting study that tried to compare the outcomes of kidney transplant patients whether they were on tacrolimus or cyclosporine and whether they were on MMF or mTORi. They used the PS matching to make these comparisons on a real-world cohort.

Although the PS matching is the best way to reduce any confounding bias, the authors lost almost half of the sample because they could not match them. When we look at Fig 2A we can see that the differences between those matched or not for the comparison of TACROLIMUS to CYCLOSPORINE do not include cancer, comorbidities, metabolic parameters, etc..however, in Fig2B, the differences are more important especially when it comes to cancer that is one of the indicatiosn to switch to mTORi. Therefore, authors need to align their conclusions with this important limitation of the PS matching selection.

My other comment is that this manuscript should be revised by a native English speaker (some sentences are really hard to read).

Reviewer #6: Really interesting stuff.

Keywords: Please uniform. Either all in lowercase, or all in uppercase. Choose and be consistent.

Is 'raw data' available?

This is very important, the verifiability and repeatability of the research. It is unclear whether or not.

I agree that the outcome of rejection must be histologically documented.

P2 L38: Please, write 'risk of rejection/' instead of 'reject/'.

P4 L77: Avoid abbreviations at the very beginning of the sentence.

etc.

Go through the text a few more times, there are still some lexical and grammatical errors.

P4 L81: There is still the question of correction of IS therapy in the event of malignancy, conversion to mTOR, etc., where even some of our national transplant experts cannot give an unequivocal answer or conclusion as to what to do.

As you said - guidelines are one thing, life is another.

Reviewer #7: In the current manuscript, Bellini et al. reveal the effectiveness and safety profile of different immunosuppressive regimens in kidney transplantation. A large amount of multicenter data was collected and statistical analysis was performed. Their results indicated that tacrolimus-based immunosuppressive therapy appeared to be superior to cyclosporine in reducing rejection and severe infections. Besides, the combination of tacrolimus and mTORi may represent a valid alternative to the association with mycophenolate. These results are very important to improve graft survival and reduce acute rejection.

1.Mortality and transplant reject/graft failure were defined as outcomes of this study. Is it also possible to include renal function like eGFR as the outcomes? To use renal function as an indicator of effectiveness could help clinicians to evaluate the prognosis. I recommend a deeper exploration of this outcome if it is possible.

2.Please unify the wording, such as tumor and cancer.

3.The study relies on medication dispensation data where dosage is lacking. However, medication dosage is a crucial factor to assess the adverse outcome. I noticed hospital information system and co-payment exemption registry. Is it possible to acquire the dosage information by fee items or claims?

4.Method - Given the new onset of diabetes and statin use are ones of the outcome in the study, it’s inappropriate to have the history of diabetes and statin use at baseline as covariates. Please excluded patients with these two factors from the beginning.

5.Result - Table 1 tells several indicators’ SMD value of comparison pairs between TAC+MMF and TAC+mTORi ≥0.1. The indicators should be included as confounders in Cox models to assess the independent effect of exposures.

6.Result - The 112 (20%) patients of TAC+mTORi group were excluded according to the data after propensity score matching, which may result in sampling bias. Please use one to more matching or provide the outcome of the excluded data.

7.Graphics - Figure 2A and 2B were seen unclear here. Please provide clearer figures.

Reviewer #8: (No Response)

**********

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Reviewer #6: No

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PLoS One. 2024 Jan 2;19(1):e0295205. doi: 10.1371/journal.pone.0295205.r004

Author response to Decision Letter 1


26 Oct 2023

Reviewer #3: The manuscript evaluated the effectiveness and safety by comparison between cyclosporine and tacrolimus-based therapies, Tacrolimus + mTORi and Tacrolimus + MMF in kidney transplant recipients and reported the results of real-world data on the use of CNI based maintenance therapies in kidney transplant recipients.

1.It would be very important to report baseline renal function ( serum creatinine ,GFR or eGFR ) and urine protein of transplant kidney.

Thank you for the suggestion since the work in based on administrative data we had limited access to clinical information about our cohort. Data regarding baseline renal function and proteinuria were not available within the SIT; we had some data on renal function after transplantation (GFR). However, we chose not to add renal function as an effectiveness outcome because the variable resulted in a high rate of missing values (exceeding 80% for some of the years considered). We are aware that this is an important limit of the study and we have rephrased the discussion, emphasizing the importance of investigating this aspect in future studies.

2.The outcome considered in the manuscript were mortality and transplant reject/graft failure for effectiveness analysis, and incidence of severe infections, cancer, diabetes and statin use for safety analysis. The outcome should consider renal function progression. ≥50% decline in eGFR should be added to the primary outcome for effectiveness analysis.

As previously mentioned, the clinical information about renal function is not available. The study is observational, based on administrative claims and CNT data, this limitation is addressed in the discussion.

Reviewer #4: Dear authors,

I think the revised form of the manuscript is quite improved. I will hava e few additional comments.

The use of mTOR inhibitors as part of initial maintenance therapy is usually limited by early posttransplant complications (delayed allograft function, poor wound healing, and an increased incidence of lymphoceles) associated with these agents. Did you have any data about this? Were mTOR inhibitors used in these patients as a part of initial maintenance therapy?

No, we don’t have this data because, through administrative data, we can only track side effects that require the use of healthcare services; we have outlined this limitation in the discussion section. However, our study revealed that in some medical centers, mTORi are prescribed in 60% of cases, and it is unlikely that all of this usage can be attributed to these complications.

Were the ones under the treatment of azathioprine excluded?

Yes, we excluded these patients. We added this information in the method section.

Lack of data about induction treatment is an important limitation. Data whether target levels of CNI’s were reached or not was also lacking.

No, the nature of administrative data precludes the acquisition of detailed clinical patient information. Nevertheless, we believe that this work can enhance the understanding of maintenance immunosuppression and its use. As reported in the discussion section, the result observed in our unselected population are similar to those seen in trials. Despite these limitations in data availability, we do not believe that these factors have introduced distortions in our study.

Did you know BK virus infection prevalance in these different groups?

The ICD-9CM come for tracking BK virus infection is 079.89, which corresponds to “Other specified viral infection”. Since it is not an exclusive and specific code, we have decided not to use it for tracking infections. However, this aspect is certainly interesting and we will consider it for future project developments..

P64 line 99 LAR should be explained. (legally acceptable representative)

Thank you, we have explained the acronym.

Table 1 “sovrappeso” should be corrected.

We have translated the word.

Reviewer #5: This is an interesting study that tried to compare the outcomes of kidney transplant patients whether they were on tacrolimus or cyclosporine and whether they were on MMF or mTORi. They used the PS matching to make these comparisons on a real-world cohort.

Although the PS matching is the best way to reduce any confounding bias, the authors lost almost half of the sample because they could not match them. When we look at Fig 2A we can see that the differences between those matched or not for the comparison of TACROLIMUS to CYCLOSPORINE do not include cancer, comorbidities, metabolic parameters, etc..however, in Fig2B, the differences are more important especially when it comes to cancer that is one of the indicatiosn to switch to mTORi. Therefore, authors need to align their conclusions with this important limitation of the PS matching selection.

My other comment is that this manuscript should be revised by a native English speaker (some sentences are really hard to read).

We lost half of the sample, but this reduction was mainly due to the fact that there were only 787 CsA users; hence, the patients for whom no match was found were only 64 (787-723). The study aimed to analyze the association between therapies and outcomes and we chose to use statistical methods that allowed for internally valid results, even though this may result in a reduced external validity.

We added a reference in the text where Rubin DB and colleagues demonstrated that propensity score matching is the best way to eliminate differences between groups (42).

• Rosenbaum PR, Rubin DB. The central role of the propensity score in observational studies for causal effects. Biometrika. 1983;70:41–55.

• Rubin DB. Using multivariate matched sampling and regression adjustment to control bias in observational studies. J Am Stat Assoc. 1979;74:318–328. [Google Scholar]

• Rubin DB, Thomas N. Matching using estimated propensity scores: relating theory to practice. Biometrics. 1996;52:249–264. [PubMed] [Google Scholar]

Figures 2a and 2b demonstrate that after matching all the characteristics between the groups are balanced.

Reviewer #6: Really interesting stuff.

Keywords: Please uniform. Either all in lowercase, or all in uppercase. Choose and be consistent.

Is 'raw data' available?

This is very important, the verifiability and repeatability of the research. It is unclear whether or not.

As reported in the manuscript “The data that support the findings of this study are available from the Italian regions participating to CESIT study but restrictions apply to the availability of these data, which were used under license (as by third-party sources) for the current study, and so are not publicly available. However, data are available with permission of Italian regions, which are the data owner. The non-author contact information to which data requests may be sent is: project.cesit@gmail.com.”

Specific request will be evaluated.

I agree that the outcome of rejection must be histologically documented.

Ok. We reported this information in the method section.

P2 L38: Please, write 'risk of rejection/' instead of 'reject/'.

Ok.

P4 L77: Avoid abbreviations at the very beginning of the sentence.

etc.

Ok.

Go through the text a few more times, there are still some lexical and grammatical errors.

Ok.

We have corrected the errors.

P4 L81: There is still the question of correction of IS therapy in the event of malignancy, conversion to mTOR, etc., where even some of our national transplant experts cannot give an unequivocal answer or conclusion as to what to do.

As you said - guidelines are one thing, life is another.

This is an interesting question, but the answer of this concern was out of scope of our work.

Reviewer #7: In the current manuscript, Bellini et al. reveal the effectiveness and safety profile of different immunosuppressive regimens in kidney transplantation. A large amount of multicenter data was collected and statistical analysis was performed. Their results indicated that tacrolimus-based immunosuppressive therapy appeared to be superior to cyclosporine in reducing rejection and severe infections. Besides, the combination of tacrolimus and mTORi may represent a valid alternative to the association with mycophenolate. These results are very important to improve graft survival and reduce acute rejection.

1.Mortality and transplant reject/graft failure were defined as outcomes of this study. Is it also possible to include renal function like eGFR as the outcomes? To use renal function as an indicator of effectiveness could help clinicians to evaluate the prognosis. I recommend a deeper exploration of this outcome if it is possible.

Thank you for your suggestion. Even though we agree that renal function would be interesting to investigate in our cohort, we have not included it as one of the outcomes because the study is based on administrative data and we had limited access to information on renal function. The variable related to GFR resulted in a high rate of missing values (exceeding 80% for some of the years considered). We emphasized this aspect in the discussion section.

2. Please unify the wording, such as tumor and cancer.

Thank you for the suggestion, we have replaced the word tumor with cancer in the text.

3.The study relies on medication dispensation data where dosage is lacking. However, medication dosage is a crucial factor to assess the adverse outcome. I noticed hospital information system and co-payment exemption registry. Is it possible to acquire the dosage information by fee items or claims?

Dosage in administrative data can be obtained using “Defined Daily Dose” (DDD), which is the assumed average maintenance dose per day for a drug used for its main indication in adults. However, it is likely that in the context of transplant the therapeutic doses used in clinical practice will be different from the DDD and will depend on individual patient characteristics. This aspect was already mentioned in the limits, we have further clarified it in the discussion.

4. Method - Given the new onset of diabetes and statin use are ones of the outcome in the study, it’s inappropriate to have the history of diabetes and statin use at baseline as covariates. Please excluded patients with these two factors from the beginning.

We had already excluded patients with history of diabetes and statin use from the analysis; we have rephrased the sentence in the methods section for better clarity (L140-142)

5. Result - Table 1 tells several indicators’ SMD value of comparison pairs between TAC+MMF and TAC+mTORi ≥0.1. The indicators should be included as confounders in Cox models to assess the independent effect of exposures.

Ok. As reported in the method we included in the model adjustment for propensity score value

6. Result - The 112 (20%) patients of TAC+mTORi group were excluded according to the data after propensity score matching, which may result in sampling bias. Please use one to more matching or provide the outcome of the excluded data.

The study’s objective was to examine the relationship between therapies and the outcomes consideres; we opted for statistical methods that prioritize internal validity, albeit potentially reducing external validity.

Rubin DB and colleagues demonstrated that propensity score matching is the best way to eliminate differences between groups (42).

• Rosenbaum PR, Rubin DB. The central role of the propensity score in observational studies for causal effects. Biometrika. 1983;70:41–55.

• Rubin DB. Using multivariate matched sampling and regression adjustment to control bias in observational studies. J Am Stat Assoc. 1979;74:318–328. [Google Scholar]

• Rubin DB, Thomas N. Matching using estimated propensity scores: relating theory to practice. Biometrics. 1996;52:249–264. [PubMed] [Google Scholar]

We added this paper in the references.

7. Graphics - Figure 2A and 2B were seen unclear here. Please provide clearer figures.

OK

Reviewer #8: (No Response)

Attachment

Submitted filename: Answers_Reviewers.docx

Decision Letter 2

Yavuz - Ayar

31 Oct 2023

PONE-D-23-20920R2Effectiveness and safety of immunosuppressive regimens used as maintenance therapy in kidney transplantation: the CESIT study.PLOS ONE

Dear Dr. Belleudi,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Kind regards,

Yavuz - Ayar

Academic Editor

PLOS ONE

Additional Editor Comments:

Dear Author/s

Greetings

After the evaluations, a major revision decision has been made for your article.

Best regards

[Note: HTML markup is below. Please do not edit.]

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2024 Jan 2;19(1):e0295205. doi: 10.1371/journal.pone.0295205.r006

Author response to Decision Letter 2


8 Nov 2023

Reviewer #3: The manuscript evaluated the effectiveness and safety by comparison between cyclosporine and tacrolimus-based therapies, Tacrolimus + mTORi and Tacrolimus + MMF in kidney transplant recipients and reported the results of real-world data on the use of CNI based maintenance therapies in kidney transplant recipients.

1.It would be very important to report baseline renal function ( serum creatinine ,GFR or eGFR ) and urine protein of transplant kidney.

Thank you for the suggestion since the work in based on administrative data we had limited access to clinical information about our cohort. Data regarding baseline renal function were not available within the SIT; we had some data on renal function after transplantation (GFR). However, we chose not to add renal function as an effectiveness outcome because the variable resulted in a high rate of missing values (exceeding 80% for some of the years considered). We are aware that this is an important limit of the study and we have rephrased the discussion, emphasizing the importance of investigating this aspect in future studies.

2.The outcome considered in the manuscript were mortality and transplant reject/graft failure for effectiveness analysis, and incidence of severe infections, cancer, diabetes and statin use for safety analysis. The outcome should consider renal function progression. ≥50% decline in eGFR should be added to the primary outcome for effectiveness analysis.

As previously mentioned, the clinical information about renal function is not available. The study is observational, based on administrative claims and CNT data, this limitation is addressed in the discussion.

Reviewer #4: Dear authors,

I think the revised form of the manuscript is quite improved. I will hava e few additional comments.

The use of mTOR inhibitors as part of initial maintenance therapy is usually limited by early posttransplant complications (delayed allograft function, poor wound healing, and an increased incidence of lymphoceles) associated with these agents. Did you have any data about this? Were mTOR inhibitors used in these patients as a part of initial maintenance therapy?

No, we don’t have this data. We have outlined this limitation in the discussion section. However, our study revealed that in some medical centers, mTORi are prescribed in 60% of cases, and it is unlikely that all of this usage can be attributed to these complications.

Were the ones under the treatment of azathioprine excluded?

Yes, we excluded these patients. We added this information in the method section.

Lack of data about induction treatment is an important limitation. Data whether target levels of CNI’s were reached or not was also lacking.

No, the nature of administrative data precludes the acquisition of detailed clinical patient information. Nevertheless, we believe that this work can enhance the understanding of maintenance immunosuppression and its use. As reported in the discussion section, the result observed in our unselected population are similar to those seen in trials. Despite these limitations in data availability, we do not believe that these factors have introduced distortions in our study.

Did you know BK virus infection prevalance in these different groups?

The ICD-9CM come for tracking BK virus infection is 079.89, which corresponds to “Other specified viral infection”. Since it is not an exclusive and specific code, we have decided not to use it for tracking infections. However, this aspect is certainly interesting and we will consider it for future project developments.

P64 line 99 LAR should be explained. (legally acceptable representative)

Thank you, we have explained the acronym.

Table 1 “sovrappeso” should be corrected.

We have translated the word.

Reviewer #5: This is an interesting study that tried to compare the outcomes of kidney transplant patients whether they were on tacrolimus or cyclosporine and whether they were on MMF or mTORi. They used the PS matching to make these comparisons on a real-world cohort.

Although the PS matching is the best way to reduce any confounding bias, the authors lost almost half of the sample because they could not match them. When we look at Fig 2A we can see that the differences between those matched or not for the comparison of TACROLIMUS to CYCLOSPORINE do not include cancer, comorbidities, metabolic parameters, etc..however, in Fig2B, the differences are more important especially when it comes to cancer that is one of the indicatiosn to switch to mTORi. Therefore, authors need to align their conclusions with this important limitation of the PS matching selection.

My other comment is that this manuscript should be revised by a native English speaker (some sentences are really hard to read).

We lost half of the sample, but this reduction was mainly due to the fact that there were only 787 CsA users; hence, the patients for whom no match was found were only 64 (787-723). The study aimed to analyze the association between therapies and outcomes and we chose to use statistical methods that allowed for internally valid results, even though this may result in a reduced external validity.

We added a reference in the text where Rubin DB and colleagues demonstrated that propensity score matching is the best way to eliminate differences between groups (42).

• Rosenbaum PR, Rubin DB. The central role of the propensity score in observational studies for causal effects. Biometrika. 1983;70:41–55.

• Rubin DB. Using multivariate matched sampling and regression adjustment to control bias in observational studies. J Am Stat Assoc. 1979;74:318–328. [Google Scholar]

• Rubin DB, Thomas N. Matching using estimated propensity scores: relating theory to practice. Biometrics. 1996;52:249–264. [PubMed] [Google Scholar]

Figures 2a and 2b demonstrate that after matching all the characteristics between the groups are balanced.

Reviewer #6: Really interesting stuff.

Keywords: Please uniform. Either all in lowercase, or all in uppercase. Choose and be consistent.

Is 'raw data' available?

This is very important, the verifiability and repeatability of the research. It is unclear whether or not.

As reported in the manuscript “The data that support the findings of this study are available from the Italian regions participating to CESIT study but restrictions apply to the availability of these data, which were used under license (as by third-party sources) for the current study, and so are not publicly available. However, data are available with permission of Italian regions, which are the data owner. The non-author contact information to which data requests may be sent is: project.cesit@gmail.com.”

Specific request will be evaluated.

I agree that the outcome of rejection must be histologically documented.

Ok. We reported this information in the method section.

P2 L38: Please, write 'risk of rejection/' instead of 'reject/'.

Ok.

P4 L77: Avoid abbreviations at the very beginning of the sentence.

etc.

Ok.

Go through the text a few more times, there are still some lexical and grammatical errors.

Ok.

We have corrected the errors.

P4 L81: There is still the question of correction of IS therapy in the event of malignancy, conversion to mTOR, etc., where even some of our national transplant experts cannot give an unequivocal answer or conclusion as to what to do.

As you said - guidelines are one thing, life is another.

This is an interesting question, but the answer of this concern was out of scope of our work.

Reviewer #7: In the current manuscript, Bellini et al. reveal the effectiveness and safety profile of different immunosuppressive regimens in kidney transplantation. A large amount of multicenter data was collected and statistical analysis was performed. Their results indicated that tacrolimus-based immunosuppressive therapy appeared to be superior to cyclosporine in reducing rejection and severe infections. Besides, the combination of tacrolimus and mTORi may represent a valid alternative to the association with mycophenolate. These results are very important to improve graft survival and reduce acute rejection.

1.Mortality and transplant reject/graft failure were defined as outcomes of this study. Is it also possible to include renal function like eGFR as the outcomes? To use renal function as an indicator of effectiveness could help clinicians to evaluate the prognosis. I recommend a deeper exploration of this outcome if it is possible.

Thank you for your suggestion. Even though we agree that renal function would be interesting to investigate in our cohort, we have not included it as one of the outcomes because the study is based on administrative data and we had limited access to information on renal function. The variable related to GFR resulted in a high rate of missing values (exceeding 80% for some of the years considered). We emphasized this aspect in the discussion section.

2. Please unify the wording, such as tumor and cancer.

Thank you for the suggestion, we have replaced the word tumor with cancer in the text.

3.The study relies on medication dispensation data where dosage is lacking. However, medication dosage is a crucial factor to assess the adverse outcome. I noticed hospital information system and co-payment exemption registry. Is it possible to acquire the dosage information by fee items or claims?

Dosage in administrative data can be obtained using “Defined Daily Dose” (DDD), which is the assumed average maintenance dose per day for a drug used for its main indication in adults. However, it is likely that in the context of transplant the therapeutic doses used in clinical practice will be different from the DDD and will depend on individual patient characteristics. This aspect was already mentioned in the limits, we have further clarified it in the discussion.

4. Method - Given the new onset of diabetes and statin use are ones of the outcome in the study, it’s inappropriate to have the history of diabetes and statin use at baseline as covariates. Please excluded patients with these two factors from the beginning.

We had already excluded patients with history of diabetes and statin use from the analysis; we have rephrased the sentence in the methods section for better clarity (L140-142)

5. Result - Table 1 tells several indicators’ SMD value of comparison pairs between TAC+MMF and TAC+mTORi ≥0.1. The indicators should be included as confounders in Cox models to assess the independent effect of exposures.

Ok. As reported in the method we included in the model adjustment for propensity score value

6. Result - The 112 (20%) patients of TAC+mTORi group were excluded according to the data after propensity score matching, which may result in sampling bias. Please use one to more matching or provide the outcome of the excluded data.

The study’s objective was to examine the relationship between therapies and the outcomes consideres; we opted for statistical methods that prioritize internal validity, albeit potentially reducing external validity.

Rubin DB and colleagues demonstrated that propensity score matching is the best way to eliminate differences between groups (42).

• Rosenbaum PR, Rubin DB. The central role of the propensity score in observational studies for causal effects. Biometrika. 1983;70:41–55.

• Rubin DB. Using multivariate matched sampling and regression adjustment to control bias in observational studies. J Am Stat Assoc. 1979;74:318–328. [Google Scholar]

• Rubin DB, Thomas N. Matching using estimated propensity scores: relating theory to practice. Biometrics. 1996;52:249–264. [PubMed] [Google Scholar]

We added a reference in the paper.

7. Graphics - Figure 2A and 2B were seen unclear here. Please provide clearer figures.

OK. We modified all figures following pacev2

Reviewer #8: (No Response)

Attachment

Submitted filename: Answers_Reviewers.docx

Decision Letter 3

Yavuz - Ayar

16 Nov 2023

Effectiveness and safety of immunosuppressive regimens used as maintenance therapy in kidney transplantation: the CESIT study.

PONE-D-23-20920R3

Dear Dr. Belleudi,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Yavuz - Ayar

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Dear Author/s

Greetings

The article can be published in its current form.

Best regards

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

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Reviewer #7: All comments have been addressed

Reviewer #8: All comments have been addressed

**********

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Reviewer #7: Yes

Reviewer #8: Yes

**********

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Reviewer #7: Yes

Reviewer #8: Yes

**********

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Reviewer #7: No

Reviewer #8: Yes

**********

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Reviewer #8: Yes

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Reviewer #8: (No Response)

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Reviewer #8: No

**********

Acceptance letter

Yavuz - Ayar

20 Dec 2023

PONE-D-23-20920R3

PLOS ONE

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I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

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on behalf of

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    Supplementary Materials

    S1 Table. Codes ICDIX-CM for infections.

    (DOCX)

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    Submitted filename: Answers_Reviewers.docx

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    Data Availability Statement

    The data that support the findings of this study are available from the Italian regions participating to CESIT study but restrictions apply to the availability of these data, which were used under license (as by third-party sources) for the current study, and so are not publicly available. However, data are available with permission of Italian regions, which are the data owner. The non-author contact information to which data requests may be sent is: project.cesit@gmail.com.


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