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. 2024 Jan 18;14(1):e1496. doi: 10.1002/ctm2.1496

Causal relationship between endometriosis and inflammatory bowel disease: A Mendelian randomization analyses

Yan Dang 1, Shutian Zhang 1,
PMCID: PMC10797250  PMID: 38239073

Dear Editor,

Endometriosis (EMS), a chronic gynecological disorder characterized by the presence of endometrial‐like tissue outside the uterus, is intricately understood. The presence of an inflammatory environment outside the pelvic region has prompted researchers to reconsider EMS as an immunity‐associated systemic disorder. 1 The term inflammatory bowel disease (IBD) refers to inflammation in the gastrointestinal tract, traditionally categorized into ulcerative colitis (UC) and Crohn's disease (CD). The coexistence of IBD and EMS has been documented. 2 Craninx et al. reported histological features of EMS in CD patients undergoing surgical resection without a preoperative EMS diagnosis. 3 Deep infiltrating EMS and posterior adenomyosis were significantly more frequent in patients with IBD. Additionally, Jess et al. reported that women with EMS were 50% more likely to suffer from IBD than women in general. 4 However, in observational studies, potential biases from residual confounding and reverse causality affect the inference of cause‐effect relationships. The question of whether IBD induces or promotes EMS, or vice versa, remains unclear.

Mendelian randomization (MR) is a methodological approach in epidemiological research that assesses the potential causality of a risk factor or modifiable exposure and clinical outcome by utilizing genetic instruments. Genetic variants, unalterable and randomly assigned during human germ cell formation, enable MR to impartially evaluate exposure effects, avoiding common confounding or reverse causality issues in observational studies (Figure 1A). 5 The current understanding of the relationship between EMS and IBD is confined to observational studies, incapable of establishing a direct causal relationship. Additionally, conducting randomized controlled trials is not feasible. Therefore, we applied a two‐sample MR approach to elucidate the causality between the two.

FIGURE 1.

(A) The basic principles of mendelian analysis (MR). Instrumental variables (IVs) have to fulfill three principal assumptions: 1. they are closely related to the risk factor of interest; 2, they are not correlated with any potential confounders influencing the outcomes; 3, they affect the outcomes only via the risk factor; (B) workflow of the MR study design. Single nucleotide polymorphisms (SNPs) were extracted as IVs if reaching the genome‐wide association studies (GWAS) P < 5E‐8 and were further clumped to ensure the independency of instruments (clumping criteria: linkage disequilibrium [LD] r 2 = 0.001 and window size = 10,000 kb). Also, SNPs with P < 1E‐5 in the PhenoScanner database would be deleted in the following analysis. (C) The results of MR analysis taking endometriosis (EMS) as exposure to estimate their causal effect on inflammatory bowel disease (IBD), ulcerative colitis (UC) and Crohn's disease (CD). (D) The results of MR analysis of EMS (Sapkota Y) on IBD, UC and CD. ASRM, American Society for Reproductive Medicine; MR‐PRESSO, mendelian Randomization Pleiotropy RESidual Sum and Outlier; OR, odds ratio; CI, confidence interval.

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EMS and IBD large‐scale genome‐wide association study (GWAS) summary results are presented in Tables 1A and 1B, with no sample overlap between them. 6 , 7 Figure 1B displays the selection process for instrumental variables (IVs) of EMS. Detailed information about the finally selected IVs is listed in Table S1.

TABLE 1A.

Description of the outcome IBD.

Sample size
Outcome (total and subgroups) case control GWAS Catalog accession number PMID
IBD 12 882 21,770 ieu‐a‐31 26192919
UC 5956 14,927 ieu‐a‐32 26192919
CD 6968 20,464 ieu‐a‐30 26192919

Abbreviations: CD, Crohn's disease; GWAS, genome‐wide association studies; IBD, inflammatory bowel disease; UC, ulcerative colitis.

TABLE 1B.

Description of the exposure EMS.

Sample size
Exposure (total and subgroups) Case Control GWAS catalog accession number
Total EMS 12 056 94 394 finn‐b‐N14_ENDOMETRIOSIS
ASRM I/II 4554 169 192 finn‐b‐N14_ENDOMETRIOSIS_ASRM_STAGE1_2
ASRM III/IV 6032 167 714 finn‐b‐N14_ENDOMETRIOSIS_ASRM_STAGE3_4
Ovary 4648 94 394 finn‐b‐N14_ENDOMETRIOSIS_OVARY
Pelvic peritoneum 1979 94 394 finn‐b‐N14_ENDOMETRIOSIS_PELVICPERITONEUM
Uterus 3433 94 394 finn‐b‐N14_ENDOMETRIOSIS_UTERUS
Rectovaginal septum and vagina 1979 94 394 finn‐b‐N14_ENDOMETRIOSIS_RECTPVAGSEPT_ VAGINA
Occurring infertility 2423 166 260 finn‐b‐N14_ENDOMET_INFERT
Total EMS (Sapkota Y) 14 926 189 715 GCST004549

Abbreviations: ASRM, American Society for Reproductive Medicine; EMS, endometriosis; GWAS, genome‐wide association studies.

We employed five different methods for the MR effect estimates. We used inverse‐variance weighted (IVW) linear regression as our primary method. A statistically significant causal association is defined as an adjusted p < 0.017, indicating a considerable relationship between the exposure and outcome phenotype. We used a series of sensitivity analyses to address variants heterogeneity and the pleiotropy effect, the flow of all MR analyses can be available in Figure 1B. 8 , 9 Another EMS GWAS dataset provided by Sapkota Y was also used to validate our findings. An R language version of 4.2.0 was used for all analyses. R‐based packages ‘TwoSampleMR’ and ‘MRPRESSO’ were applied to conduct MR analyses. 10 The data visualization was conducted using the ‘TwoSampleMR’ and ‘forestplot’.

In a cohort of people with different subtypes of EMS, MR analysis was carried out to estimate the risk of IBD following EMS. As shown in Table 1C, the genetically predicted EMS increased IBD risk (OR = 1.128, PIVW = 0.003). Subsequent analyses focusing on the main subtypes of IBD, UC, and CD, suggested a causal association between EMS and CD (PIVW = 0.040). However, the statistical significance was lost after applying the Bonferroni adjustment to account for multiple comparisons. When performing MR analysis with different subtypes of EMS as the exposures and IBD as the outcome, a significantly higher risk of IBD was observed only for ovarian EMS (OR = 1.093, PIVW = 0.005). Furthermore, we performed MR analyses of different EMS stages as exposure (as determined by the American Society for Reproductive Medicine [ASRM]). The causality between EMS ASRM III/IV and IBD as a whole is notably significant (OR = 1.098, PIVW = 0.014). However, null significant causal associations are observed between different EMS stages and UC or CD. Additionally, our reverse MR analysis revealed no causal relationship between IBD (exposure) and EMS (outcome) (see Table S2). Another MR analysis, utilizing the GWAS data provided by Sapkota, provides additional support for these findings (Table 1D). Genetically predicted EMS increased the risk of IBD (OR = 1.240, PIVW = 0.001). Although this analysis further suggested the causality of EMS on UC (OR = 1.323, PIVW = 0.005), this conclusion was not consistent with the original analysis. No obvious horizontal pleiotropy or outliers were detected in all MR analyses (p > 0.05). Analyses of sensitivity are shown in the Supplementary Figure.

TABLE 1C.

Causal estimation for the effect of EMS on IBD, UC as well as CD.

Exposure Outcome MR methods Number of SNPs OR (95% CI) SE

MR

p‐value

MR‐Steiger

p‐Value

heterogeneity

p‐Value

pleiotropy

EMS_total IBD MR Egger 14 1.130 (.877–1.456) .129 .362 True .840 .985
IVW 14 1.128 (1.042–1.221) .040 .003 .888
Weighted median 14 1.120 (1.011–1.240) .054 .041
EMS_total UC MR Egger 13 1.052 (.764–1.450) .163 .760 True .797 .802
IVW 13 1.095 (.985–1.217) .054 .092 .852
Weighted median 13 1.137 (.994–1.301) .074 .062
EMS_total CD MR Egger 14 1.249 (.842–1.853) .201 .291 TRUE .212 .622
IVW 14 1.134 (1.006–1.278) .061 .040 .255
Weighted median 14 1.099 (.943–1.281) .081 .227
EMS (ASRM I/II) IBD MR Egger 8 .828 (.381–1.800) .650 .650 True .743 .488
IVW 8 1.108 (1.015–1.209) .045 .023 .773
Weighted median 8 1.079 (.961–1.211) .059 .200
EMS (ASRM I/II) UC MR Egger 8 .557 (.209–1.488) .501 .288 True .616 .196
IVW 8 1.149 (1.029–1.284) .057 .014 .476
Weighted median 8 1.174 (1.006–1.369) .079 .042
EMS (ASRM I/II) CD MR Egger 8 1.375 (.480–3.938) .537 .575 True .922 .608
IVW 8 1.030 (.914–1.160) .061 .628 .943
Weighted median 8 .969 (.836–1.123) .075 .678
EMS (ASRM III/IV) IBD MR Egger 19 1.270 (1.019–1.584) .112 .048 True .023 .776
IVW 19 1.098 (1.019–1.184) .038 .014 .047
Weighted median 19 1.118 (1.026–1.218) .044 .014
EMS (ASRM III/IV) UC MR Egger 19 1.162 (.863–1.564) .152 .337 True .023 .776
IVW 19 1.115 (1.012–1.227) .049 .027 .032
EMS (ASRM III/IV) UC Weighted median 19 1.144 (1.029–1.272) .0542 .016
EMS(ASRM III/IV) CD MR Egger 19 1.352 (1.024–1.785) .142 .049 True .179 .121
IVW 19 1.086 (.987–1.195) .049 .090 .108
Weighted median 19 1.063 (.945–1.196) .060 .310
EMS_ovary IBD MR Egger 17 1.190 (1.001–1.415) .088 .068 True .155 .321
IVW 17 1.093 (1.028–1.163) .031 .005 .146
Weighted median 17 1.103 (1.023–1.190) .039 .011
EMS_ovary UC MR Egger 9 1.100 (.801–1.512) .162 .575 True .729 .955
IVW 9 1.090 (.994–1.196) .047 .068 .816
Weighted median 9 1.101 (.977–1.240) .061 .114
EMS_ovary CD MR Egger 18 1.283 (1.008–1.635) .123 .060 True .092 .139
IVW 18 1.072 (.981–1.173) .046 .126 .051
Weighted median 18 1.073 (.969–1.189) .052 .177
EMS_pelvic peritoneum IBD MR Egger 9 1.160 (.731–1.843) .236 .549 NA .644 .733
IVW 9 1.068 (.990–1.153) .039 .087 .730
Weighted median 9 1.062 (.960–1.175) .052 .245
EMS_pelvic peritoneum UC MR Egger 9 1.060 (.558–2.014) .327 .863 NA .299 .915
IVW 9 1.099 (.996–1.212) .050 .060 .394
Weighted median 9 1.086 (.959–1.230) .063 .191
EMS_pelvic peritoneum CD MR Egger 9 1.311 (.701–2.454) .320 .424 NA .980 .432
IVW 9 1.008 (.909–1.118) .053 .875 .972
Weighted median 9 .973 (.854–1.109) 0.066 .684
Exposure Outcome MR methods Number of SNPs OR (95% CI) SE

MR

p‐Value

MR‐Steiger

p‐Value

heterogeneity

p‐Value

pleiotropy

EMS_rectovaginal septum and vagina IBD MR Egger 8 .729 (.467–1.139) .227 .214 NA .970 .128
IVW 8 1.085 (1.018–1.157) .033 .012 .726
Weighted median 8 1.079 (.990–1.175) .044 .083
EMS_rectovaginal septum and vagina UC MR Egger 8 .565 (.322–.991) .286 .093 NA .946 .051
IVW 8 1.127 (1.036–1.226) .043 .005 .368
Weighted median 8 1.107 (.995–1.231) .054 .061
EMS_rectovaginal septum and vagina CD MR Egger 8 1.139 (.621–2.091) .310 .688 NA .900 .725
IVW 8 1.018 (.932–1.111) .045 .697 .939
Weighted median 8 .987 (.887–1.099) .054 .816
EMS_occurring infertility IBD MR Egger 6 1.256 (.765–2.062) .253 .418 NA .766 .544
IVW 6 1.065 (.970–1.170) .048 .186 .810
Weighted median 6 0.990 (.846–1.158) .080 .900
EMS_occurring infertility UC MR Egger 6 1.538 (.825–2.864) .317 .247 NA .745 .288
IVW 6 1.049 (.933–1.181) .060 .423 .631
Weighted median 6 .990 (.846–1.158) .080 .900
EMS_occurring infertility CD MR Egger 6 1.150 (.543–2.435) .383 .734 NA .306 .922
IVW 6 1.105 (.972–1.257) .066 .127 .436
Weighted median 6 1.078 (.917–1.266) .082 .363

Abbreviations: ASRM, American Society for Reproductive Medicine; CD, Crohn's disease; CI, confidence interval; EMS, endometriosis; IBD, inflammatory bowel disease; IVW, inverse‐variance weighted; MR, Mendelian randomization; OR, odds ratio; SNP, single nucleotide polymorphism; UC, ulcerative colitis.

TABLE 1D.

Causal estimation for the effect of EMS (Sapkota Y) on IBD, UC as well as CD.

Exposure Outcome MR methods Number of SNPs OR (95% CI) SE

MR

p‐value

MR‐Steiger

p‐Value

heterogeneity

p‐Value

pleiotropy

EMS_total IBD MR Egger 9 1.286 (.661–2.501) .339 .483 True .425 .917
IVW 9 1.240 (1.087–1.415) .067 .001 .532
Weighted median 9 1.245 (1.046–1.483) .089 .014
EMS_total UC MR Egger 9 1.429 (.505–4.045) .531 .523 True .144 .917
IVW 9 1.323 (1.090–1.607) .099 .005 .207
Weighted median 9 1.421 (1.125–1.796) .119 .003
EMS_total CD MR Egger 11 1.192 (.362–3.930) .609 .780 NA .039 .863
IVW 11 1.072 (.863–1.330) .110 .531 .059
Weighted median 11 .997 (.797–1.247) .114 .979

Abbreviations: CD, Crohn's disease; CI, confidence interval; EMS, endometriosis; IBD, inflammatory bowel disease; IVW, inverse‐variance weighted; MR, Mendelian randomization; OR, odds ratio; SNP, single nucleotide polymorphism; UC, ulcerative colitis.

It is the first MR study that analyzes the largest GWAS data of EMS patients available, providing robust evidence for detecting the causal estimates of IBD and EMS. Our findings suggest increased IBD risks following EMS, corroborating published research. Notably, our research contributes significant new insights to the field by unveiling the distinct effects of different EMS subtypes and stages on the risk of IBD. Owing to the multi‐system effects of EMS, the diagnoses are often delayed or misdiagnosed. We utilized genetic variants to identify genetic EMS, providing an alternative solution to this challenge.

The potential pathophysiological overlap between EMS and IBD may be a driving factor for the occurrence of IBD in EMS patients. Izumi et al. documented peritoneal immune features in EMS, noting abnormalities in neutrophils, macrophages, natural killer cells, and T/B lymphocytes. 11 These immune dysregulations, associated with autoimmune diseases, have also been observed in IBD. Additionally, EMS involves excess production of prostaglandins, metalloproteinases (MMP), chemokines, and tumour necrosis factor‐alpha (TNF‐α), similar to indicators seen in IBD. Elevated MMP levels were observed in inflamed intestinal mucosa. 12 Anti‐TNF therapy, an effective treatment for IBD, is also being explored for EMS treatment. Dysbiosis is a major risk factor for IBD and also closely correlates with EMS. 13 These shared biological characteristics may provide some insight into the potential link between EMS and IBD, albeit with uncertain underlying mechanisms.

Although further validation is needed, this study contributes to optimizing the clinical management of EMS. First‐line therapy for EMS involves combining non‐steroidal anti‐inflammatory drugs (NSAIDs) with contraceptives or progestins. 14 However, NSAIDs are involved in the development of IBD through various mechanisms, increasing the risk of UC (multivariate HR = 1.87) and CD (multivariate HR = 1.59). The use of contraceptives is also associated with a higher incidence of IBD (CD: RR = 1.46–1.51; UC: RR = 1.28–1.53). 15 Alternative treatment options should be considered for EMS patients exposed to additional risks of IBD whenever possible. Gastrointestinal involvement can manifest in 5%−15% of EMS patients, showing symptoms like constipation, diarrhea, dysmenorrhea and dyspareunia, a colonoscopy is recommended to distinguish between IBD or EMS‐related intestinal manifestations. Tailored treatment is essential for EMS patients with coexisting IBD. For those without gastrointestinal symptoms, regular surveillance colonoscopies are beneficial.

Our research has certain limitations. While the outlier assessment and MR‐Egger test did not indicate any influence of pleiotropy on the results, it is possible that in certain unknown scenarios, complete correction of horizontal pleiotropy may not be achieved. On the other hand, the sample size of exposure and outcome are relatively small, we could not further distinguish the effect of EMS on two IBD subgroups.

In conclusion, our study confirmed the increased risk of IBD following EMS, but not vice versa.

AUTHOR CONTRIBUTIONS

Study concept and design: Shutian Zhang. Data acquisition and analysis: Shutian Zhang and Yan Dang. Drafting of the manuscript: Yan Dang.

CONFLICT OF INTEREST STATEMENT

The authors declare no conflict of interest.

FUNDING INFORMATION

This research received no specific grant from any funding agency in the public, commercial or not‐for‐profit sectors.

ETHICAL STATEMENT

Not Applicable.

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ACKNOWLEDGEMENTS

The authors want to acknowledge the participants and investigators of the FinnGen study‘’ Kurki M.I., et al. FinnGen: Unique genetic insights from combining isolated population and national health register data, medRxiv 2022.03.03.22271360; DOI: https://doi.org/10.1101/2022.03.03.22271360. They express their gratitude to the International Inflammatory Bowel Disease Genetics Consortium (IIBDGC) (https://www.ibdgenetics.org) for generously providing publicly accessible data. They are also thankful to Sapkota Y for supplying the EMS GWAS data. For further details, please see https://doi.org/10.1038/ncomms15539.

DATA AVAILABILITY STATEMENT

All data involved in the current study are publicly available data from individual referenced papers.

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Supplementary Materials

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Data Availability Statement

All data involved in the current study are publicly available data from individual referenced papers.


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