Abstract
Neoadjuvant immunotherapy plus chemotherapy improves event-free survival (EFS) and pathologic complete response (0% residual viable tumor (RVT) in primary tumor (PT) and lymph nodes (LNs)), and is approved for treatment of resectable lung cancer. Pathologic response assessment after neoadjuvant therapy is the potential analog to radiographic response for advanced disease. However, %RVT thresholds beyond pathologic complete response and major pathologic response (≤10% RVT) have not been explored. Pathologic response was prospectively assessed in the randomized, phase 3 CheckMate 816 trial (NCT02998528), which evaluated neoadjuvant nivolumab (anti-programmed death protein 1) plus chemotherapy in patients with resectable lung cancer. RVT, regression and necrosis were quantified (0–100%) in PT and LNs using a pan-tumor scoring system and tested for association with EFS in a prespecified exploratory analysis. Regardless of LN involvement, EFS improved with 0% versus >0% RVT-PT (hazard ratio = 0.18). RVT-PT predicted EFS for nivolumab plus chemotherapy (area under the curve = 0.74); 2-year EFS rates were 90%, 60%, 57% and 39% for patients with 0–5%, >5–30%, >30–80% and >80% RVT, respectively. Each 1% RVT associated with a 0.017 hazard ratio increase for EFS. Combining pathologic response from PT and LNs helped differentiate outcomes. When compared with radiographic response and circulating tumor DNA clearance, %RVT best approximated EFS. These findings support pathologic response as an emerging survival surrogate. Further assessment of the full spectrum of %RVT in lung cancer and other tumor types is warranted. ClinicalTrials.gov registration: NCT02998528.
Subject terms: Non-small-cell lung cancer, Cancer immunotherapy
Analysis of the phase 3 CheckMate 816 trial shows that the depth of pathologic response as assessed by percent residual viable tumor is correlated with event-free survival following neoadjuvant immunotherapy plus chemotherapy, supporting pathologic response as a biomarker of survival.
Main
With the successes of immune checkpoint inhibitors for advanced cancers, treatments targeting programmed death protein 1 (PD-1) and programmed death ligand 1 (PD-L1) are now being evaluated in earlier stages of cancer, and a standardized system for assessing therapeutic benefit is an unmet need. The gold standard for benefit of cancer therapies is improved overall survival. However, collection of survival data can take as long as 10 years, particularly for earlier-stage disease1. Event-free survival (EFS) is currently an accepted surrogate end point for the approval of new neoadjuvant therapies; however, this end point relies heavily on radiographic assessment of tumor recurrence (for example, Response Evaluation Criteria in Solid Tumors (RECIST)), and RECIST has recognized limitations in the context of earlier-stage disease2,3. Robust metrics that can be measured early in therapy and are associated with survival outcomes are invaluable for informing treatment decisions; these can also facilitate and expedite clinical trial reporting. Pathologic response provides a rigorous and objective assessment of therapeutic efficacy, and a growing body of data support its role as a surrogate end point for new therapy approval.
Neoadjuvant systemic immunotherapy offers the advantage of enhanced priming of the immune system while higher levels of tumor antigens are present, leading to improved immune surveillance of micrometastatic disease4. Tumors resected after neoadjuvant therapy also provide a unique opportunity for pathologic assessment of treatment efficacy, and trials in numerous tumor types have incorporated pathologic response as an independent or coprimary end point. Pathologic complete response (pCR; 0% residual viable tumor (RVT)) has been used as a surrogate end point in neoadjuvant chemotherapy studies5,6; additionally, ‘near pCR’ or major pathologic response (MPR; ≤10% RVT) has been suggested empirically as an alternative to pCR due to a larger proportion of patients who experience MPR versus pCR1. However, the most clinically meaningful and practical RVT thresholds for immunotherapy-treated tumors are yet to be established.
Neoadjuvant immunotherapy results in recognizable histologic features, and a standardized, pan-tumor scoring system (immune-related pathologic response criteria (irPRC))7,8 was developed to capture features of pathologic response, inclusive of immune-mediated tumor regression. This quantitative system is independent of disease location, for example, primary tumor (PT), lymph node (LN) or distant metastasis7,8, and scores RVT from 0 to 100%. irPRC for the assessment of %RVT has been used in multiple phase 1 and 2 trials evaluating neoadjuvant immunotherapy across diverse tumor types9–18.
In the randomized, phase 3 CheckMate 816 study (NCT02998528), neoadjuvant nivolumab plus chemotherapy significantly improved EFS and pCR (primary end points) versus chemotherapy in patients with resectable non-small-cell lung carcinoma19, leading to the first regulatory approval of neoadjuvant chemoimmunotherapy for lung cancer. Since the first report, periadjuvant chemotherapy plus immunotherapy regimens have shown efficacy in this patient population20,21. Here, in a prespecified exploratory analysis from CheckMate 816, we report the first in-depth assessment of the full spectrum of %RVT (beyond pCR alone) in both the PT and LNs and its association with EFS. To our knowledge, this represents the first use of this pan-tumor pathologic scoring system in a phase 3 registrational trial for any tumor type and provides evidence to support pathologic assessment of %RVT in both the PT and LNs for patients receiving neoadjuvant regimens that include immunotherapy.
Results
Patient population
Clinical and biomarker assessments were performed during the course of the trial (Fig. 1a,b). Of 358 patients concurrently randomized to the nivolumab plus chemotherapy or chemotherapy arms, pathologically evaluable samples from the PT were available in 141 and 126 patients, respectively (path-evaluable patient population; Extended Data Fig. 1). Baseline characteristics in the path-evaluable patient population were consistent with those of the overall population19 and well-balanced across treatment arms (Table 1). Baseline characteristics were generally similar in patients with and without pathologic evidence of LN involvement. Approximately one third of patients received optional adjuvant therapy, which is summarized by subpopulation in Supplementary Table 1. Forty-seven patients had matched pretreatment and on-treatment specimens available.
Table 1.
Path-evaluable populationa | ||||||
---|---|---|---|---|---|---|
All | With LN involvementb | Without LN involvementb | ||||
Nivolumab plus chemotherapy (n = 141) | Chemotherapy (n = 126) | Nivolumab plus chemotherapy (n = 68) | Chemotherapy (n = 74) | Nivolumab plus chemotherapy (n = 72) | Chemotherapy (n = 51) | |
Age, median (range), years | 64 (46–82) | 65 (34–83) | 64 (47–76) | 65 (34–84) | 67 (49–80) | 65 (46–82) |
Male | 69 | 71 | 72 | 72 | 65 | 69 |
Regionc | ||||||
North America | 26 | 29 | 26 | 27 | 25 | 33 |
Europe | 20 | 10 | 15 | 12 | 25 | 6 |
Asia | 49 | 55 | 50 | 54 | 47 | 57 |
ECOG PS | ||||||
0 | 75 | 68 | 75 | 73 | 75 | 59 |
1 | 25 | 32 | 25 | 27 | 25 | 41 |
Staged,e | ||||||
IB–II | 37 | 39 | 26 | 32 | 46 | 47 |
IIIA | 63 | 61 | 74 | 68 | 54 | 53 |
Histology | ||||||
Squamous | 47 | 52 | 46 | 51 | 47 | 51 |
Nonsquamous | 53 | 48 | 54 | 49 | 53 | 49 |
Smoking statusf | ||||||
Current/former | 89 | 87 | 88 | 85 | 90 | 92 |
Never | 11 | 12 | 12 | 15 | 10 | 6 |
Tumor PD-L1 expressiong | ||||||
Not evaluable | 8 | 8 | 10 | 12 | 6 | 2 |
<1% | 44 | 46 | 48 | 34 | 40 | 63 |
≥1% | 48 | 46 | 41 | 54 | 54 | 35 |
1–49% | 29 | 29 | 16 | 35 | 42 | 20 |
≥50% | 19 | 18 | 25 | 19 | 12 | 16 |
TMBh | ||||||
Not evaluable/not reportedi | 50 | 48 | 56 | 51 | 46 | 43 |
<12.3 mut/Mb | 29 | 29 | 28 | 30 | 29 | 28 |
≥12.3 mut/Mb | 21 | 23 | 16 | 19 | 25 | 29 |
Data reported as % unless otherwise noted.
ECOG PS, Eastern Cooperative Oncology Group performance status.
aPath-evaluable: patients who underwent surgery and had pathologically evaluable samples.
bAmong 179 patients randomized to both the nivolumab plus chemotherapy and chemotherapy groups, 149 and 135 received treatment and had definitive surgery, respectively, and 140 and 125 had path-evaluable samples from both PT and LN; LN involvement refers to pathologic evidence of LN disease at resection that had or had not fully regressed after neoadjuvant treatment (0% or >0% RVT in the resected LN).
cRest of the world: 6% of patients in the nivolumab plus chemotherapy and chemotherapy arms (path-evaluable patient population), 9% and 7% of patients in the nivolumab plus chemotherapy and chemotherapy arms (with LN involvement), 3% and 4% of patients in the nivolumab plus chemotherapy and chemotherapy arms (without LN involvement).
dDisease stage by case report form, per American Joint Committee on Cancer 7th edition.
eStage IB, IIA, IIB disease: 6%, 16% and 15% of patients in the nivolumab plus chemotherapy arm and 3%, 21% and 14% in the chemotherapy arm, respectively (path-evaluable patient population); 3%, 16% and 7% of patients in the nivolumab plus chemotherapy arm and 3%, 24% and 5% in the chemotherapy arm, respectively (with LN involvement); 8%, 17% and 21% of patients in the nivolumab plus chemotherapy arm and 4%, 18% and 26% in the chemotherapy arm, respectively (without LN involvement).
fSmoking status unknown: one patient in the chemotherapy arm (path-evaluable patient population); one patient in the chemotherapy arm (without LN involvement).
gLevel of PD-L1 expression was determined using the PD-L1 IHC 28-8 pharmDx assay (Dako); patients with tumor tissue that could not be assessed for PD-L1 (≤10% of concurrently randomized patients) were stratified to the PD-L1 expression <1% subgroup at randomization.
hTMB was evaluated using the Illumina TSO500 assay. A 12.3-mut/Mb cutoff per TSO500 corresponds to 10 mut/Mb per the FoundationOne assay.
iTMB was not analyzed for patients in China; these patients are included in the ‘not reported’ category.
RVT and EFS
The prognostic relevance of RVT in surgical resection specimens was investigated through the association of RVT and EFS in all path-evaluable patients. Patients with no RVT in the PT (pCR-PT) had improved EFS versus those with RVT in both treatment arms (Fig. 1c,d; hazard ratio (HR) = 0.18 for the nivolumab plus chemotherapy arm); however, only 5 of 126 patients (4.0%) in the chemotherapy arm had a pCR-PT, as compared with 46 of 141 in the nivolumab plus chemotherapy arm (32.6%). The association of pCR-PT with EFS was observed regardless of baseline disease stage, PD-L1 expression, and squamous or nonsquamous histology (Extended Data Fig. 2). A threshold of ≤10% RVT (that is, MPR-PT) was also able to identify patients with EFS benefit in both the nivolumab plus chemotherapy and chemotherapy arms (HR = 0.26 and 0.48, respectively; Extended Data Fig. 3), consistent with previous reports for chemotherapy1,22. The HR for progression associated with 1% increase of RVT was 1.017 (95% confidence interval (CI): 1.010–1.025), suggesting that each 1% increase in residual tumor is associated with a 0.017 increase in HR for EFS.
Receiver operating characteristic (ROC) curve analysis of 2-year EFS rate by %RVT-PT (as a continuous variable) showed that %RVT-PT was predictive of EFS at 2 years for nivolumab plus chemotherapy (area under the curve (AUC) = 0.74; Fig. 1e). The distribution of the depth of pathologic response (Extended Data Fig. 4) was used to choose thresholds for the EFS subgroup analysis. Patients with RVT-PT 0–5%, >5–30%, >30–80% and >80% had 2-year EFS rates of 90%, 60%, 57% and 39%, respectively (Fig. 1f), suggesting that patients with deeper pathologic response have better EFS outcomes at 2 years. The ROC analysis for the chemotherapy arm was limited by a narrow range of pathologic response for %RVT-PT and fewer surviving patients at 24 months compared with the nivolumab plus chemotherapy arm (AUC = 0.54).
Regression, necrosis, PD-L1, tumor mutational burden and treatment-related adverse events
In addition to RVT, the proportions of necrosis and regression in the PT bed and LN were scored as part of response assessment (Fig. 2 and Extended Data Fig. 5) and provide insight into treatment effects. The relationships of these components to each other and to patient characteristics were also determined. There was an inverse relationship between %RVT and %regression in both arms. Patients in the nivolumab plus chemotherapy arm showed lower %RVT and higher %regression in both the PT and LN than those in the chemotherapy arm (Fig. 2). In contrast, median necrosis was similar between the two treatment arms, and no relationships between necrosis and RVT or regression were observed in either treatment arm. The pathologic and baseline clinical characteristics (histologic subtype, PD-L1 or tumor mutational burden (TMB) status; occurrence of treatment-related adverse events (TRAEs); pathologic evidence of LN involvement) are shown in Fig. 2 and Supplementary Table 2, and no clear patterns of association were observed between depth of pathologic response and these features, though some subgroups were small. Specifically, occurrence of TRAEs was similar in patients with or without pCR-PT/MPR-PT (Supplementary Table 3).
To further delineate treatment effect, paired pretreatment and on-treatment pathologic specimens were compared for %regression and %necrosis. Although most pretreatment specimens showed no evidence of tumor regression, a subset showed features consistent with a degree of spontaneous immune-mediated regression (Fig. 3a and Extended Data Fig. 6a), which has been reported in lung cancer23. Features of immune-mediated regression generally increased on therapy. In contrast, a systematic increase in %necrosis-PT after therapy was not observed (Fig. 3b and Extended Data Fig. 6b). The relationship of these features with therapeutic effect or a lack thereof was affirmed with 2-year EFS analyses, namely %regression reflects overall treatment effect on the clinical outcome, whereas %necrosis does not (Extended Data Fig. 7). In fact, on-treatment necrosis was associated with lower EFS rates, particularly in the chemotherapy arm (Fig. 3c; 2-year EFS rates for absence versus presence of necrosis: 74% versus 67% for nivolumab plus chemotherapy, and 66% versus 45% for chemotherapy).
LN involvement
EFS favored nivolumab plus chemotherapy versus chemotherapy in patients with or without pathologic evidence of LN involvement (HR = 0.69 and 0.74, respectively, Fig. 4a). The relationships between pCR-PT or MPR-PT and EFS in both arms were maintained regardless of LN involvement (Fig. 4b and Extended Data Figs. 8 and 9). Notably in the nivolumab plus chemotherapy arm, patients who had pathologic evidence of LN involvement and then had a complete response in the LN (0% RVT-LN) had comparable survival to those who had no pathologic evidence of ever having LN involvement (86% versus 77% EFS at 2 years by Kaplan–Meier analysis; number at risk: 13 and 43, respectively).
The prognostic value of %RVT was further demonstrated by combining assessment of the PT and LNs (Fig. 4c). A graduated improvement in EFS was observed in patients with LN involvement who had 0% RVT in both the PT and LNs versus 0% RVT in either specimen versus those with >0% RVT in both specimens (2-year EFS rates: 92%, 76% and 49%, respectively; Fig. 4d), indicating that pathologic assessment of LNs provides additional prognostic information beyond the PT alone.
Pathology versus radiology and circulating tumor DNA
The relationship between %RVT and other proposed clinical and translational correlates was also assessed. Radiology did not fully manifest underlying %RVT-PT or %RVT-LN (Fig. 5a–c and Extended Data Fig. 10). Although patients with complete response or partial response by imaging tended to have lower %RVT-PT than those with stable disease or progressive disease, only 6% of patients (3 of 51) with pCR-PT demonstrated complete response by RECIST1.1. Furthermore, 19% (18 of 94) who had MPR-PT did not show a radiographic response. When pathology and radiology assessment of LN involvement were compared, radiographic studies suggested LN involvement in 36% of cases, but no evidence of involvement was evident on pathology (Fig. 5a,b). Conversely, 27% of patients who had LN involvement on pathology were not suspected to have nodal disease on radiology.
The association of circulating tumor DNA (ctDNA) clearance with pathologic response in the PT was also explored. A higher rate of ctDNA clearance was seen in patients with deeper pathologic responses (0–10% RVT-PT) in the nivolumab plus chemotherapy arm, although small numbers of patients in several %RVT categories limited subset analysis (Fig. 5d). Notably, 9% (6 of 66) had ctDNA clearance but demonstrated >50% RVT-PT. Furthermore, whereas 267 patients were path-evaluable, only 66 (25%) of these were evaluable for ctDNA clearance, highlighting the current technical and material challenges with this approach. When ctDNA clearance, radiographic response and pathologic response were investigated as surrogates for EFS in the path-evaluable patient population, pathologic response most closely estimated outcome (Fig. 5e).
Discussion
In CheckMate 816, neoadjuvant nivolumab plus chemotherapy significantly improved both primary end points of EFS and pCR versus chemotherapy in patients with resectable lung cancer19. Here, we showed improved EFS in both arms for patients with pCR or MPR in the PT only, irrespective of LN involvement. Furthermore, the depth of pathologic response (%RVT-PT) was associated with improved EFS outcomes. We also demonstrated the prognostic value of other pathologic features and of combining %RVT in the PT and LNs.
The United States Food and Drug Administration requires that a surrogate end point supporting accelerated approval be at least “reasonably likely to predict clinical benefit”24. In contrast to correlates, surrogates not only associate with outcome, but also manifest overall treatment effect on the clinical outcome24,25. The substantiation of a surrogate requires large cohorts, as are found in phase 3 clinical trials such as CheckMate 816 or robust meta-analyses. Results of the current study provide prospective evidence of pathologic response assessment that includes immune-mediated regression as an emerging surrogate for outcome in the neoadjuvant immuno-oncology setting.
Radiographic response by RECIST has been used as a surrogate for long-term clinical benefit and to support accelerated approvals in oncology for patients with advanced, unresectable disease26. It also serves as a guide for the treating oncologist27. However, it has limitations when applied to neoadjuvant therapy, as further highlighted by the radiographic–pathologic disconnect in both the PT and LNs. In the neoadjuvant setting, pathologic response is poised to parallel the role of RECIST in advanced disease with regard to surrogacy for regulatory approvals, given that it is available within 2 to 3 months after treatment initiation. It also has the potential to inform adjuvant therapy decisions. Here, we used thresholds of 5% and 80% RVT to separate patients receiving nivolumab plus chemotherapy into three distinct prognostic groups. Although the final determination of clinically meaningful thresholds will require a larger number of patients, %RVT thresholds could be used to determine whether to de-escalate therapy (for example, ≤5–10% RVT at resection), continue therapy in the adjuvant setting or consider an alternative adjuvant regimen (for example, >80% RVT). It is worth noting that potential clinically relevant cut points, for example, the 80% RVT identified here, require the assessment of the full spectrum of %RVT to be captured. To date, reports on immunotherapy-containing regimens in lung have only reported pCR and MPR, with a focus on PT. In this study, approximately one third of patients experienced pCR or MPR in the PT. However, capturing the full spectrum of %RVT as performed herein allows for the refined prognostication and potential adaptive management for the remaining two thirds of patients.
The percent RVT in this study was determined using the pan-tumor irPRC. This scoring system was developed using a data-driven approach that compared pre- versus on-treatment specimens and responders versus nonresponders, as well as studying more than ten different solid tumor types treated in both the neoadjuvant and advanced disease settings. The assessment of treatment effect has historically varied by tumor type, including different approaches to the calculation of %RVT (surface area of RVT divided by the surface area of where tumor used to be). The variability exists largely in guidance for determining histologically where tumor used to be, that is, the denominator of the calculation. The goal of the pan-tumor effort was to identify histologic features of treatment effect (including immune-mediated regression) that are common across tumor types, disease stage and anatomic location7,8, analogous to a RECIST radiographic assessment. Importantly, this quantitative system also accounts for histopathologic features observed in patients treated with chemotherapy8. This has the advantage of allowing pathologists to use one scoring system, rather than asking them to change between systems based on drug indication, treatment arm and/or tumor type. Capturing and reporting %RVT using such a pan-tumor scoring system will facilitate important meta-analyses across trials and tumor types and better determination of objective and generalizable cut points.
Owing to the lack of a preexisting, established pan-tumor precedent for scoring pathologic response, some individual disease groups developed recommendations for pathologic response scoring, including the International Association for the Study of Lung Cancer (IASLC). The development of their recommendations postdated the start of this study; notwithstanding, irPRC is generally inclusive of these recommendations, albeit with some minor differences, for example, irPRC and IASLC both score histologic components that include fibrosis, inflammation, necrosis and residual tumor. The notable difference between the two systems is that irPRC distinguishes noninflamed tumor stroma from the fibroinflammatory wound-healing response seen in tumor regression, whereas IASLC does not. The finding that %regression is as predictive as %RVT in this study underscores the notion that regression represents an important tissue class with biologic importance. Both systems have been shown to be reproducible for the scoring of %RVT in the PT, but IASLC has not yet reported on the reproducibility of LN scoring28. A Society for Immunotherapy of Cancer-led multi-institutional reproducibility study for pan-tumor irPRC that includes 14 international pathologists and numerous tumor types beyond lung cancer is currently underway, with an interim analysis showing an intraclass correlation coefficient of 0.88 for assessing %RVT at 10% intervals. In subset analysis, similar reproducibility was seen for both the PTs and LNs (intraclass correlation coefficient = 0.88, for each)29.
Immune-mediated regression is characterized by (1) immune activation—tumor-infiltrating lymphocytes (TILs) with macrophages and variable tertiary lymphoid structures; (2) tumor cell clearance—foamy macrophages and often associated cholesterol clefts; and (3) tissue repair—neovascularization and proliferative fibrosis. irPRC recognizes these histologic features of the regression bed and scores them collectively as a constellation of colocalized features. This is readily and efficiently achieved for practicing pathologists and facilitates accurate determination of where the tumor used to be when performing %RVT calculations. If immune-mediated regression is not part of the calculation for %RVT, the potential exists to overestimate the %RVT and underestimate the therapeutic effect of a given regimen. It is possible that some individual histologic features may ultimately prove to be more predictive than the collective, and/or that tumor type, histologic grade or anatomic location (PT- or LN)-specific nuances will emerge once survival data mature and retrospective studies on individual histologic features are completed. The theoretical additive value of more detailed, elaborate or disease-specific approaches to scoring will have to be clearly superior with regard to predicting survival outcomes to outweigh the benefits of an efficient, robust and effective pan-tumor system for RVT assessment.
In addition to identifying survival surrogates in %RVT and %regression, we demonstrated that %necrosis may be negatively associated with EFS. Some reports have suggested that necrosis may represent treatment effect, although it has also been noted in untreated tumors22,30–33. In the current analysis, necrosis did not increase with neoadjuvant therapy or improve AUC for predicting EFS when added to %regression, in contrast to what would be expected if necrosis reflected therapeutic response. Preclinical studies have reported the adverse effect of necrosis on T cell effector function34, and a recent study in renal cell carcinoma showed that necrosis attenuated the survival benefit of TILs in patients receiving anti-PD-1 (ref. 35). Future studies should be designed to determine how to best incorporate necrosis into prognosis across therapeutic agents and contexts.
Previous scoring systems for pathologic response to chemotherapy as well as American Joint Committee on Cancer pathologic downstaging require pathologic confirmation of pretreatment nodal disease36, which is subject to sampling error. However, the irPRC scoring system allowed for pathologic analysis of the PT and all LNs recovered from definitive surgery, allowing us to ask outstanding questions regarding the benefit of neoadjuvant therapy in patients with and without LN involvement. Although the study was not powered to address this question, we found similar EFS improvements in patients with or without LN involvement. Importantly, when pathologic response in the PT was taken into account, patients who showed a response demonstrated a clear survival benefit, irrespective of LN involvement. Furthermore, LN assessment provided additional prognostic information beyond the PT alone, which may potentially be used to refine adjuvant therapy decisions.
Other potential predictors and surrogates of response and survival that have been considered in this setting are PD-L1 expression level, TMB and ctDNA clearance37. There was no clear association between the different %RVT categories evaluated and TMB or PD-L1 status. These results are largely consistent with previously reported results in the intention-to-treat population for pCR/MPR in the PD-L1 subgroups19. We found some association between ctDNA clearance and pCR/MPR; however, the number of patients evaluable for ctDNA was small, with only a quarter of patients evaluated. The sensitivity and specificity of ctDNA clearance for predicting pCR to neoadjuvant immunotherapy requires further development before its use as a solitary biomarker for presurgical clinical decision-making. Furthermore, the personalized ctDNA detection method used here requires whole-exome sequencing of pretreatment tumor, a relatively expensive assay requiring specialized equipment. Pathologic assessment of slides is very feasible and affordable, and can be generated using routine workflows in hospital and community laboratories around the world, without any additional equipment or individualization. In this study, every patient who went to surgery had slides made for pathologic evaluation, as is typical for hospital workflows. Neoadjuvant treatment response in breast, colon and pancreatic carcinomas, as well as many sarcomas, is assessed by pathologists routinely as a part of the College of American Pathologists/American Joint Committee on Cancer and European Society of Pathology /European Organisation for Research and Treatment of Cancer staging guidelines. Additionally, the presence of immune-mediated regression is assessed as part of melanoma staging, further indicating the ability and expectation of pathologists in performing such analyses as a part of routine care. Future studies will be required to understand the best way to leverage the potential complementarity of pathologic response, ctDNA clearance and radiologic assessment.
TRAEs, specifically immune-related adverse events, have also been associated with survival outcomes in some studies. However, survival-time bias often exists, with surviving patients receiving more immunotherapy. CheckMate 816 included optional adjuvant chemotherapy with or without radiotherapy, but not immunotherapy. As such, this study provided a unique opportunity to assess for a potential relationship between tumor regression and TRAEs in an unbiased manner, and no apparent association was observed.
Potential limitations of the study include the fact that details regarding postoperative nodal staging (information regarding anatomic levels of LNs, that is, N1 versus N2) were not available, precluding a more detailed analysis on the impact of %RVT by nodal level. Additionally, given the fact that adjuvant therapy was not part of the trial schema, it was not possible to determine whether there was a specific %RVT cutoff for which patients would benefit from the addition of an adjuvant regimen. It will also be important to assess the full spectrum of %RVT by irPRC in the lung cancer resection specimens from other registrational trials of neoadjuvant chemotherapy plus immunotherapy to validate the emerging clinically important %RVT thresholds identified herein.
The need for a standardized and shared language to report radiographic response to cancer therapy led to the development of the RECIST criteria 50 years ago. Here, we present the first prospective evidence, to our knowledge, that pathologic response can be used similarly in the neoadjuvant setting, with a standardized scoring system to assess %RVT that was specifically designed to be pan-tumor. Although this study was performed on resection specimens from patients with lung cancer, these findings have implications for response assessment and trial design in multiple tumor types. In summary, given the prognostic value of %RVT, its assessment using routine surgical pathology workflows and a scoring system generalizable to any solid tumor type, it is anticipated to become a biomarker for guiding subsequent adjuvant therapy in perisurgical clinical trials, substantiate more refined pathologic response end points and ultimately lead to a new standard of care in clinical diagnostics.
Methods
Patients and tissue samples
CheckMate 816 (ClinicalTrials.gov identifier: NCT02998528) is an ongoing, global, open-label, randomized phase 3 study in treatment-naive adults with resectable stage IB (≥4 cm) to IIIA non-small-cell lung cancer (per American Joint Committee on Cancer 7th edition staging criteria), Eastern Cooperative Oncology Group performance status 0 to 1 and no known sensitizing EGFR mutations or ALK alterations. From March 2017 through November 2019, a total of 773 patients were enrolled at study sites in 14 different countries. Patients were randomized 1:1 to receive nivolumab 360 mg plus platinum-doublet chemotherapy or platinum-doublet chemotherapy every 3 weeks for three cycles before undergoing definitive surgery within 6 weeks of completing neoadjuvant treatment. Randomization was stratified per interactive response technology by PD-L1 (<1%/not evaluable versus ≥1%), disease stage (IB–II versus IIIA) and sex (male versus female). The sex of participants was determined based on self-reporting to the site. Additional information on the study design and eligibility criteria of CheckMate 816 have been previously described and can be found in Supplementary Information Protocol19.
The path-evaluable patient population includes patients who underwent definitive surgery after neoadjuvant treatment and had pathologically evaluable samples. Within this population, analyses were conducted in patients with and without pathologic evidence of LN involvement. LN involvement refers to pathologic evidence of LN disease at resection that had fully regressed (0% RVT) or had not regressed (>0% RVT) after neoadjuvant treatment. When available, pretreatment biopsy samples were also evaluated.
Definitive resection specimen
PT and LN <1 cm in greatest dimension were submitted in their entirety. Tumors >1 cm and <3 cm had two small 3-mm2 pieces taken for additional biomarker studies, and the remainder of the specimen was submitted for histologic processing. For larger tumors (>3 cm) and LN, a full-thickness cross-section was taken from the largest dimension of the tumor mass and submitted for evaluation in addition to standard sections taken for routine staging purposes, including background normal lung. Hematoxylin-and-eosin-stained slides from all tissue blocks generated from the definitive surgical specimen (lung with or without LNs) from each case were submitted for central pathology review, along with a de-identified pathology report. For cases from China, digitized slides were submitted for review.
Pathologic assessment using irPRC was then performed by a central pathology committee consisting of a team of academic pathologists from Johns Hopkins University. Each case was read by two pathologists. If the estimate of residual tumor differed by >10% between the two pathologists, a third pathologist served as an adjudicator to finalize the score. The pathologists were blinded to treatment arm, clinical outcome and patient identifiers.
Pretreatment samples
When available, the original diagnostic biopsy sample was also assessed by irPRC for evidence of pre-existing immune control or clearance of tumor and/or necrosis. This approach has previously been applied to incisional pretreatment and on-treatment biopsy samples. The latter was associated with long-term patient outcomes after anti-PD-1-based therapy in the neoadjuvant and advanced disease settings18,33.
Assessments
There were two primary end points, EFS according to blinded independent central review and pCR (0% RVT in the PT and sampled LN) according to blinded independent pathologic review. EFS was defined as time from randomization to progressive disease (according to RECIST 1.1) that precluded surgery, progressive disease after surgery, progressive disease in the absence of surgery or death due to any cause per blinded independent central review.
Secondary end points included MPR (≤10% RVT in the PT and sampled LNs), time to death or distant metastasis, and overall survival. Adverse events were assessed in all the treated patients. Adverse events reported here were assessed at baseline, continuously while on treatment, and within 100 days after the last dose of neoadjuvant therapy or 90 days after surgery or up to 30 days after the last dose of adjuvant therapy (whichever was longest). Grade 5 adverse events were events leading to death within 24 hours; events leading to death >24 hours after onset were reported with the worst grade before death. Clinical and biomarker assessments were performed during the course of the trial.
The timeline for sample collection for biomarker studies is shown in Fig. 1a. Each specimen was scored for pathologic response per blinded independent pathologic review using pan-tumor irPRC7,8. Specifically, features of %RVT, necrosis and tumor regression were determined for the tumor bed (where tumor used to be) of the PT and any involved LNs (Fig. 1b). pCR was defined as 0% and MPR as ≤10% RVT in both the PT and LNs (pCR-PT, MPR-PT, pCR-LN and MPR-LN, respectively). The association of different pathologic response categories and associated histologic features with EFS were assessed in the overall path-evaluable population and subpopulations by LN involvement. We also evaluated relationships between %RVT and radiographic response, tumor PD-L1 expression, TMB and ctDNA clearance before definitive surgery. Level of PD-L1 expression was determined using the PD-L1 IHC 28-8 pharmDx assay (Dako); patients with tumor tissue that could not be assessed for PD-L1 (≤10% of concurrently randomized patients) were stratified to the PD-L1 expression <1% subgroup at randomization. TMB was evaluated using the Illumina TSO500 assay. A 12.3-mutations per megabase (mut/Mb) cutoff per TSO500 corresponds to 10 mut/Mb per the FoundationOne assay. Analyses of ctDNA were performed with the use of a tumor-guided personalized ctDNA panel for whole-exome sequencing (ArcherDX Personalized Cancer Monitoring). Clearance of ctDNA was defined as presurgery change from detectable levels of ctDNA before cycle 1 to undetectable ctDNA before cycle 3 (ref. 19). ctDNA analyses were performed on plasma samples collected on day 1 before each of the three treatment cycles. TMB and ctDNA analyses were not conducted on patients from China because of local regulations. Comparisons of histologic features were made between paired pretreatment and on-treatment pathology specimens, where available.
Statistical analysis
Approximately 350 patients were planned for concurrent randomization to nivolumab plus chemotherapy and chemotherapy. This sample size was based on the primary end points of pCR and EFS with 0.01 and 0.04 type I error allocation (two-sided), respectively. If the pCR comparison was significant, the 0.01 alpha was planned to be reallocated to the EFS comparison, which would be based on a two-sided type I error of 0.05. Additionally, overall survival was planned to be tested hierarchically after EFS significance.
AUC provides an overall diagnostic accuracy of the pathologic response parameters above; a value of 0.5 indicates random chance, 0.7 to 0.8 indicates fair predictive value, and 1 indicates perfect accuracy. The optimal cutoff value for any of the pathologic response parameters (single or combination) was calculated using Youden’s index to maximize the true positive rate and minimize the false positive rate.
Analyses are exploratory, and descriptive statistics were used to report associations. pCR, MPR and %RVT data are from the final analysis of pCR (16 September 2020), whereas all other efficacy and safety results are from the prespecified interim analysis 1 of EFS (20 October 2021; final analysis for EFS). A time-dependent ROC curve38 was constructed using an appropriate modeling approach to assess the predictive ability of single or combined pathologic response parameters (%RVT, and so on) for EFS at 2 years. EFS was estimated using the Kaplan–Meier method, with HRs and associated two-sided 95% confidence intervals calculated using an unstratified Cox proportional hazards model.
Bristol Myers Squibb’s Trial Access online eWR number 8091 dated 4 February 2022 along with eDM/Oracle Clinical Release number 5.4.012r7 dated 10 April 2023 was used for data collection. SAS Studio v.9.04.01M7P08062020 (AWS) was used for data analysis.
Trial oversight
The sponsor (Bristol Myers Squibb) analyzed the data with participation from all authors. CheckMate 816 was performed in accordance with the Declaration of Helsinki and the International Conference on Harmonisation Good Clinical Practice guidelines. The extended pathologic analysis of resection specimens reported herein was conducted at Johns Hopkins University and was approved by the Johns Hopkins University institutional review board (IRB00122321). The study protocol for the parent trial and all amendments were approved by an institutional review board or independent ethics committee at each study site, and an independent data and safety monitoring committee reviewed/monitored the efficacy and safety of all evaluated treatments. A list of investigators and study sites was previously published19. All patients provided written informed consent before initiating study procedures. No compensation was provided to the participants except for a few study sites who provided travel costs, as necessary.
Reporting summary
Further information on research design is available in the Nature Portfolio Reporting Summary linked to this article.
Online content
Any methods, additional references, Nature Portfolio reporting summaries, source data, extended data, supplementary information, acknowledgements, peer review information; details of author contributions and competing interests; and statements of data and code availability are available at 10.1038/s41591-023-02660-6.
Supplementary information
Acknowledgements
This work was supported by Bristol Myers Squibb and Ono Pharmaceutical Company Ltd. We thank the patients and families who made this trial possible, the investigators and clinical study teams who participated in this trial, and Dako, an Agilent Technologies company, for collaborative development of the PD-L1 IHC 28-8 pharmDx assay. This research was also supported by the Bloomberg–Kimmel Institute for Cancer Immunotherapy (J.M.T.), The Mark Foundation for Cancer Research (J.M.T.) and NIH R01 CA142779 (J.M.T.). Medical writing and editorial support for the development of this manuscript, under the direction of the authors, was provided by Z. Amin, S. L. Dwyer and M. Wiggin of Ashfield MedComms, an Inizio company, funded by Bristol Myers Squibb.
Extended data
Author contributions
J.S.D., A.C.-M., T.R.C. and J.M.T. were responsible for the study conceptualization. J.S.D., T.R.C., A.S.B. and J.M.T were responsible for the methodology and protocol writing. M.P., P.M.F., J. Spicer, N.G. and K.M.K. carried out the investigation (clinical trial). J.S.D., A.C.-M., E.T., D.W., R.A.A., E.G., P.I., J.J., J. Sunshine, A.S.B. and J.M.T. carried out the investigation (experimental). J.S.D., D.W., L.D., M.T., J.B., J.C., V.D., J.N., D.B., A.S.B. and J.M.T. were responsible for data curation. J.S.D., L.D., V.D. and J.M.T. carried out the formal analysis. J.S.D., T.R.C. and J.M.T. wrote the original draft. All authors were responsible for writing (review and editing) the final paper.
Peer review
Peer review information
Nature Medicine thanks the anonymous reviewers for their contribution to the peer review of this work. Primary Handling Editor: Saheli Sadanand, in collaboration with the Nature Medicine team.
Data availability
De-identified and anonymized data will be made available within a secured portal to qualified researchers who submit an in-scope proposal approved by the Independent Review Committee. Proposals will be reviewed to ensure that there is adequate scientific rationale and methodology, a robust statistical analysis plan and a publication plan. Researchers should have relevant experience and demonstrate a plan to address any conflicts of interest, if applicable. Requests will be reviewed and processed by an independent committee; consequently, Bristol Myers Squibb cannot provide an estimated response time. For more information and to submit a data-sharing request, please visit https://www.bms.com/researchers-and-partners/independent-research/data-sharing-request-process.html.
Competing interests
J.S.D. reports being named on a patent for system and method for annotating pathology images to predict patient outcome (US Provisional Patent Application: 63/313,548; filed 2/24/2022). A.C.-M. reports receiving grants or contracts from Bristol Myers Squibb. M.P. reports receiving grants or contracts from AstraZeneca, Bristol Myers Squibb, Janssen, Pfizer, Roche and Takeda; and honoraria from AstraZeneca, Bristol Myers Squibb, MSD, Pfizer, Roche and Takeda. P.M.F. reports research funding received by his institution from AstraZeneca, BioNTech, Bristol Myers Squibb, Corvus, Kyowa, Novartis and Regeneron; trial steering committee membership for AstraZeneca, BioNTech, Bristol Myers Squibb and Corvus; participation in advisory boards and reimbursement from Amgen, AstraZeneca, Bristol Myers Squibb, Daiichi, F-Star Therapeutics, G1 Therapeutics, Genentech, ITeos Therapeutics, Janssen, Merck, Novartis, Sanofi and Surface; and leadership positions at Mesothelioma Applied Research Foundation and LUNGevity Foundation. J. Spicer reports research funding received by his institution from AstraZeneca, Bristol Myers Squibb, CLS Therapeutics, Protalix Biotherapeutics, Merck and Roche; receiving support for the present manuscript from Bristol Myers Squibb; consulting fees from Amgen, AstraZeneca, Bristol Myers Squibb, Merck, Novartis, Protalix Biotherapeutics, Regeneron, Roche and Xenetic Biosciences; honoraria from AstraZeneca, Bristol Myers Squibb and PeerView; participation on data safety monitoring/advisory boards for the PUCC trial; and leadership positions at the Canadian Association of Thoracic Surgeons (unpaid). N.G. reports receiving consulting fees from Amgen, AstraZeneca, Bristol Myers Squibb, Eli Lilly, Janssen, MSD, Novartis, Pfizer, Roche, Sanofi and Takeda; and meeting/travel support from Roche. R.A.A. reports receiving support for the present manuscript from Bristol Myers Squibb; grants or contracts from RAPT Therapeutics; consulting fees from AstraZeneca and MSD; and meeting/travel support from Bristol Myers Squibb. E.G. reports research funding received by his institution from the National Cancer Institute and Congressionally Directed Medical Research Programs—Department of Defense; honoraria from the LUNGevity Foundation; expert testimony provided to Covington and Burling; and holding mutual funds and exchange traded funds. P.I. reports receiving support for the present manuscript from Bristol Myers Squibb; grants or contracts from Bristol Myers Squibb; consulting fees from AbbVie, AstraZeneca, Merus, Roche and Sanofi; honoraria from Bristol Myers Squibb, Eli Lilly and Genentech; and being a shareholder of Bristol Myers Squibb. J. Sunshine reports grants or contracts from Palleon Pharmaceuticals. K.M.K. reports consulting fees from AbbVie, Amgen, AstraZeneca, Bayer, Boehringer Ingelheim, Bristol Myers Squibb, Janssen, Merck Serono, Merck Sharp & Dohme, Novartis, Pfizer, Regeneron, Roche, Takeda and Ventana; and honoraria from AstraZeneca, Amgen, Boehringer Ingelheim, Bristol Myers Squibb, Janssen, Medscape, Merck Serono, Merck Sharp & Dohme, Novartis, Pfizer, Prime Oncology, Roche and Ventana. M.T. is an employee and shareholder of Bristol Myers Squibb. J.B. is an employee and shareholder of Bristol Myers Squibb. J.C. is an employee and shareholder of Bristol Myers Squibb. V.D. is an employee and shareholder of Bristol Myers Squibb. J.N. is an employee and shareholder of Bristol Myers Squibb. D.B. is an employee and shareholder of Bristol Myers Squibb; and reports being named on a patent of Bristol Myers Squibb. T.R.C. reports research funding received by her institution from Janssen; and honoraria from AstraZeneca, Society for Immunotherapy of Cancer and TotalCME. J.M.T. reports receiving support for the present manuscript from Bristol Myers Squibb; consulting fees from AstraZeneca, Bristol Myers Squibb, Merck and Roche; participation on advisory boards from AstraZeneca; and being named on a patent for a machine learning algorithm for irPRC. The other authors declare no competing interests.
Footnotes
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Extended data
is available for this paper at 10.1038/s41591-023-02660-6.
Supplementary information
The online version contains supplementary material available at 10.1038/s41591-023-02660-6.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
De-identified and anonymized data will be made available within a secured portal to qualified researchers who submit an in-scope proposal approved by the Independent Review Committee. Proposals will be reviewed to ensure that there is adequate scientific rationale and methodology, a robust statistical analysis plan and a publication plan. Researchers should have relevant experience and demonstrate a plan to address any conflicts of interest, if applicable. Requests will be reviewed and processed by an independent committee; consequently, Bristol Myers Squibb cannot provide an estimated response time. For more information and to submit a data-sharing request, please visit https://www.bms.com/researchers-and-partners/independent-research/data-sharing-request-process.html.