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[Preprint]. 2024 Apr 5:2024.01.17.576100. Originally published 2024 Jan 22. [Version 2] doi: 10.1101/2024.01.17.576100

Integrative genomic analysis identifies unique immune environments associated with immunotherapy response in diffuse large B cell lymphoma

Sravya Tumuluru, James K Godfrey, Alan Cooper, Jovian Yu, Xiufen Chen, Brendan W MacNabb, Girish Venkataraman, Yuanyuan Zha, Benedikt Pelzer, Joo Song, Gerben Duns, Brian J Sworder, Christopher Bolen, Elicia Penuel, Ekaterina Postovalova, Nikita Kotlov, Aleksander Bagaev, Nathan Fowler, Sonali M Smith, Ash A Alizadeh, Christian Steidl, Justin Kline
PMCID: PMC10849512  PMID: 38328071

Abstract

Most diffuse large B-cell lymphoma (DLBCL) patients treated with bispecific antibodies (BsAb) or chimeric antigen receptor (CAR) T cells fail to achieve durable treatment responses, underscoring the need for a deeper understanding of mechanisms that regulate the immune environment and response to treatment. Here, an integrative, multi-omic approach was employed to characterize DLBCL immune environments, which effectively segregated DLBCLs into four quadrants – termed DLBCL-immune quadrants (IQ) - defined by cell-of-origin and immune-related gene set expression scores. Recurrent genomic alterations were enriched in each IQ, suggesting that lymphoma cell-intrinsic alterations contribute to orchestrating unique DLBCL immune environments. In relapsed/refractory DLBCL patients, DLBCL-IQ assignment correlated significantly with clinical benefit with the CD20 x CD3 BsAb, mosunetuzumab, but not with CD19-directed CAR T cells. DLBCL-IQ provides a new framework to conceptualize the DLBCL immune landscape and uncovers the differential impact of the endogenous immune environment on outcomes to BsAb and CAR T cell treatment.

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