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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2024 Feb 6;80(Pt 3):247–251. doi: 10.1107/S2056989024000938

Synthesis and crystal structure of the adduct between 2-pyridyl­selenyl chloride and isobutyro­nitrile

Ayalew W Temesgen a,*, Alexander A Sapronov b, Alexey S Kubasov c, Alexander S Novikov d, Tuan Anh Le e, Alexander G Tskhovrebov b
Editor: J Ellenaf
PMCID: PMC10915658  PMID: 38456062

The reaction between 2-pyridyl­selenenyl chloride and isobutyro­nitrile results in the formation of the corresponding cationic pyridinium-fused 1,2,4-seleno­diazole, namely, 3-(propan-2-yl)-1,2,4-[1,2,4]selena­diazolo[4,5-a]pyridin-4-ylium chloride, C9H11N2Se+·Cl, in high yield (89%). The bifurcated Se⋯Cl⋯H—Cl chalcogen-hydrogen-bonding inter­actions were analysed by DFT followed by a topological analysis of the electron-density distribution.

Keywords: crystal structure; chalcogen-hydrogen bonding; 1,2,4-seleno­diazole

Abstract

The reaction between 2-pyridyl­selenenyl chloride and isobutyro­nitrile results in the formation of the corresponding cationic pyridinium-fused 1,2,4-seleno­diazole, namely, 3-(propan-2-yl)-1,2,4-[1,2,4]selena­diazolo[4,5-a]pyridin-4-ylium chloride, C9H11N2Se+·Cl, in high yield (89%). The structure of the compound, established by means of single-crystal X-ray analysis at 100 K, has monoclinic (P21/c) symmetry and revealed the presence of bifurcated chalcogen-hydrogen bonding Se⋯Cl⋯H—Cl, and these non-covalent contacts were analysed by DFT calculations followed by a topological analysis of the electron-density distribution (ωB97XD/6-311++G** level of theory).

1. Chemical context

Recently, we discovered a novel cyclo­addition reaction between nitriles and 2-pyridyl­selenyl reagents (Artemjev et al., 2023; Khrustalev et al., 2021). Importantly, the reaction proceeds under mild conditions with high chemoselectivity and results in the formation of pyridinium-fused seleno­diazo­lium salts in high yields. The Se centre in these systems acts as a chalcogen bond donor and provides two σ-holes (Grudova et al., 2022a ,b ). The 1,2,4-seleno­diazo­lium salts were shown to form supra­molecular dimers via four-center Se⋯X (X = Hal, N) chalcogen-bonding inter­actions (Grudova et al., 2022a ,b ). In some instances, other types of supra­molecular organization were observed, depending on the nitrile employed in the cyclo­addition reaction (Grudova et al., 2022a ,b ; Sapronov et al., 2022, 2023; Artemjev et al., 2022; Buslov et al., 2021). 1.

Here we report the preparation and structural characterization of a cationic pyridinium-fused 1,2,4-seleno­diazole, which was prepared via reaction of 2-pyridyl­selenenyl chloride with isobutyro­nitrile (reagent ratio of 1:1). The reaction was carried out under stirring at room temperature in CH2Cl2/Et2O over 24 h, which led to the formation of a white suspension. Isolation and purification gave a crystalline solid of the target compound in a yield of 89%.

2. Structural commentary

The title compound (Fig. 1) crystallized in space group P21/c with four cations and four Cl anions in the asymmetric unit. The four cations exhibit identical bond distances and angles, except for the dihedral angle of the isopropyl substituent [N—C—C—C torsion angles are in the range −15.9 (12) to 17.7 (11)°]. The 1,2,4-seleno­diazole fragments are almost planar (r.m.s.d. = 0.008–0.014 Å). The Se⋯Cl distances lie in the range 2.901 (3) – 2.956 (3) Å.

Figure 1.

Figure 1

Mol­ecular structure of one of the four conformational isomers in the title compound.

Inter­estingly, the novel 1,2,4-seleno­diazole did not form supra­molecular dimers via Se⋯N contacts.

3. Supra­molecular features and QTAIM analysis

The crystal packing is shown in Fig. 2. The mol­ecules of the title compound are packed in layers parallel to the ac plane. Each row of 1,2,4-seleno­diazo­lium salts in the layer is located anti­parallel to the adjacent one. In addition to Se⋯Cl contacts (Table 1), the anions form C—H⋯Cl contacts (Table 2) that link the cations and anions both within the layers and between them.

Figure 2.

Figure 2

View along the a axis of the crystal packing of the title compound.

Table 1. Selected interatomic distances (Å).

Se1⋯Cl1 2.957 (4) Se3⋯Cl3 2.934 (4)
Se1⋯N1 2.656 (8) Se3⋯N5 2.661 (8)
Se2⋯Cl2 2.900 (4) Se4⋯Cl4 2.920 (4)
Se2⋯N3 2.664 (7) Se4⋯N7 2.658 (8)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C2—H2⋯Cl1 0.95 2.62 3.327 (10) 132
C3—H3⋯Cl2i 0.95 2.67 3.598 (9) 167
C5—H5⋯Cl1ii 0.95 2.67 3.395 (10) 133
C11—H11⋯Cl2 0.95 2.61 3.288 (10) 129
C14—H14⋯Cl2ii 0.95 2.47 3.310 (10) 147
C18—H18C⋯Cl4iii 0.98 2.73 3.687 (11) 167
C20—H20⋯Cl3 0.95 2.67 3.364 (10) 131
C23—H23⋯Cl3iv 0.95 2.73 3.418 (10) 130
C29—H29⋯Cl4 0.95 2.63 3.323 (10) 130
C30—H30⋯Cl3v 0.95 2.81 3.651 (9) 148
C32—H32⋯Cl4ii 0.95 2.76 3.452 (9) 131

Symmetry codes: (i) Inline graphic ; (ii) Inline graphic ; (iii) Inline graphic ; (iv) Inline graphic ; (v) Inline graphic .

A Hirshfeld surface analysis was performed to investigate which inter­atomic contacts make the largest contributions to the crystal packing. Fig. 3 shows the Hirshfeld surface mapped over d norm where the region of the short inter­molecular Se⋯Cl contact is indicated by an intense red spot. The contributions of the different inter­atomic contacts to the Hirshfeld surface are H⋯H (47.0%), Se⋯H (10.5%), Cl⋯H (10.4%), C⋯H (10.1%), N⋯H (8.5%), Se⋯C (4.5%), Se⋯Cl (2.7%), Cl⋯C (1.8%), Se⋯N (1.6%), Cl⋯N (1.3%), N⋯C (1.0%), N⋯N (0.5%), and C⋯C (0.1%). Thus, the Hirshfeld surface analysis for the crystal structure reveals that crystal packing is determined primarily by inter­molecular contacts involving hydrogen atoms.

Figure 3.

Figure 3

Total Hirshfeld surface mapped over d norm and delineated into Se⋯H, Cl⋯H, C⋯H and N⋯H inter­actions.

Inter­estingly, the title compound did not form supra­molecular dimers via Se⋯N contacts. To obtain a deeper understanding of the nature and qu­antify the strength of the bifurcated Se⋯Cl⋯H—C chalcogen-hydrogen bonding in the title compound, single-point DFT calculations based on the experimental X-ray geometry were performed at the B97XD/6-311++G** level of theory using the dispersion-corrected hybrid functional ωB97XD using GAUSSIAN09 (Frisch et al., 2009) with the 6-311++G** basis sets used for all atoms, followed by a topological analysis of the electron-density distribution.

A QTAIM analysis of the model structure demonstrates the presence of bond critical points (3, −1) for short contacts Se⋯Cl and C—H⋯Cl in the formed 1,2,4-seleno­diazole (Table 3 and Fig. 4). The low magnitude of the electron density, positive values of the Laplacian of the electron density and zero or very close to zero values of energy density in these bond critical points (3, −1) and estimated strength for appropriate short contacts are typical for weak, purely non-covalent inter­actions (Espinosa et al., 2002). Note that the nature of the discussed non-covalent contacts are similar to those weak inter­actions in closely related chemical systems (Grudova et al., 2022a ,b ).

Table 3. Values of the density of all electrons ρ(r), Laplacian of electron density ∇(r) and appropriate λ2 eigenvalues, energy density – H b, potential energy density – V(r), Lagrangian kinetic energy – G(r), and electron localization function – ELF (a.u.) at the bond critical points (3, −1), corresponding to bifurcated chalcogen-hydrogen bonding Se⋯Cl⋯H—C in the structure, and estimated strength for these inter­actions E int ≃ –V(r)/2 (kcal mol−1).

The Bondi (1966) van der Waals radii for the H, Se, and Cl atoms are 1.20, 1.90, and 1.75 Å, respectively.

Contact (Å) ρ(r) (r) λ2 H b V(r) G(r) ELF E int
Se⋯Cl 2.900 0.027 0.060 −0.027 0.000 −0.015 0.015 0.170 4.7
C–H⋯Cl 2.609 0.012 0.043 −0.012 0.002 −0.006 0.008 0.045 1.9
Se⋯Cl 2.957 0.024 0.056 −0.024 0.001 −0.013 0.014 0.142 4.1
C–H⋯Cl 2.617 0.012 0.041 −0.012 0.002 −0.006 0.008 0.045 1.9
Se⋯Cl 2.934 0.025 0.058 −0.025 0.000 −0.014 0.014 0.147 4.4
C–H⋯Cl 2.667 0.011 0.037 −0.011 0.002 −0.005 0.007 0.041 1.6
Se⋯Cl 2.920 0.026 0.058 −0.026 0.000 −0.015 0.015 0.165 4.7
C–H⋯Cl 2.633 0.012 0.040 −0.012 0.002 −0.006 0.008 0.044 1.9

Figure 4.

Figure 4

Contour line diagram of the Laplacian of electron density distribution ∇2r(r), bond paths, and selected zero-flux surfaces (left panel), visualization of electron localization function (ELF, center panel) and reduced density gradient (RDG, right panel) analyses for bifurcated chalcogen-hydrogen bonding Se⋯Cl⋯H–C in sample (for Se⋯Cl 2.900 Å and C–H⋯Cl 2.609 Å). Bond critical points (3, −1) are shown in blue, nuclear critical points (3, −3) in pale brown, ring critical points (3, +1) in orange, bond paths are shown as pale-brown lines, length units are Å and the colour scale for the ELF and RDG maps is presented in a.u.

4. Database survey

A search in the Cambridge Structural Database (CSD, Version 5.43, update of Sep. 2022; Groom et al., 2016) gave only 16 hits for 1,2,4-seleno­diazo­lium salts. These salts differ not only in the type of nitrile fragment [Me (EWEPUU; Khrustalev et al., 2021), Ph (NAQDES; Buslov et al., 2021), BrC6H4 (EWEQEF; Khrustalev et al., 2021)], but also in the CF3COO anion (YEJXEU; Artemjev et al., 2022), AuCl4 (YEJXUK; Artemjev et al., 2022), ReO4 (YEJYAR; Artemjev et al., 2022).

5. Synthesis and crystallization

General remarks. All manipulations were carried out in air and all reagents used in this study were obtained from commercial sources (Aldrich, TCI-Europe, Strem, ABCR). Commercially available solvents were purified by conventional methods and distilled immediately prior to use. NMR spectra were recorded on a Bruker Avance III (1H: 400 MHz); chemical shifts (δ) are given in ppm, coupling constants (J) in Hz. 2-Pyridyl­selenyl chloride was synthesized by our method (Artemjev et al., 2023; Khrustalev et al., 2021). Isobutyro­nitrile (81 µmol, 5.6 mg) was added to a suspension of 2-pyridyl­selenyl chloride (81 µmol, 15.5 mg) in CH2Cl2/Et2O (1/1, 4 mL), and the mixture was stirred at room temperature for 24 h. The formed colorless precipitate was filtered, washed with Et2O (3 × 1 mL) and dried under vacuum. Yield 18.8 mg (89%), colorless blocks. 1H NMR (400 MHz, chloro­form-d) δ 8.48 (d, J = 4.8 Hz, 1H), 7.83 (d, J = 7.9 Hz, 1H), 7.58 (td, J = 7.8 Hz, 1H), 7.12 (td, J = 7.5 Hz, 1H), 2.70 (hept, J = 7.0 Hz, 1H), 1.33 (d, J = 7.0 Hz, 6H). Crystals suitable for X-ray analysis were obtained by the slow evaporation of a CH2Cl2 solution.

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4. H atoms were positioned geom­etrically (C—H = 0.95–1.00 Å) and refined as riding with U iso(H) = 1.2–1.5U eq(C). The remaining positive and negative residual electron density close to the Se1, Se2, Se3 and Se4 atom positions (1.71 Å−3 at 0.94 Å from Se4, 1.67 Å−3 at 1.05 Å from Se2, 1.58 Å−3 at 1.03 Å from Se3, 1.54 Å−3 at 1.06 Å from Se4 and −1.53 Å−3 at 1.06 Å from Se4) suggests the possible presence of a small twin component as well.

Table 4. Experimental details.

Crystal data
Chemical formula C9H11N2Se+·Cl
M r 261.61
Crystal system, space group Monoclinic, P21/c
Temperature (K) 100
a, b, c (Å) 9.054 (11), 15.015 (15), 30.93 (3)
β (°) 94.10 (3)
V3) 4194 (8)
Z 16
Radiation type Mo Kα
μ (mm−1) 3.79
Crystal size (mm) 0.2 × 0.2 × 0.1
 
Data collection
Diffractometer Bruker D8 Venture
Absorption correction Multi-scan (SADABS; Krause et al., 2015)
T min, T max 0.499, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 25216, 9604, 6328
R int 0.092
(sin θ/λ)max−1) 0.650
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.080, 0.192, 1.10
No. of reflections 9604
No. of parameters 477
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 1.77, −1.49

Computer programs: APEX2 and SAINT (Bruker, 2019), SHELXT2014/5 (Sheldrick, 2015a ), SHELXL2018/3 (Sheldrick, 2015b ) and OLEX2 1.5 (Dolomanov et al., 2009).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989024000938/ex2079sup1.cif

e-80-00247-sup1.cif (907.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989024000938/ex2079Isup2.hkl

e-80-00247-Isup2.hkl (762.2KB, hkl)
e-80-00247-sup3.zip (5.6MB, zip)

Fingerprint plots. DOI: 10.1107/S2056989024000938/ex2079sup3.zip

CCDC reference: 2328546

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

Authors’ contributions are as follows: conceptualization, AWT, AGT; methodology, AAS, AGT; validation: AWT, ASK, AGT; formal analysis: ASN, TAL; investigation: AWT, ASK, TAL and AGT; resources, ASK, AGT; data curation, AAS, ASN, AKK; writing (original draft), ASN, AWT and TAL; writing (review and editing), AAS, AGT, TAL; visualization, AWT, TAL; supervision, AWT, AGT; project administration, AGT; funding acquisition, AGT, TAL.

supplementary crystallographic information

Crystal data

C9H11N2Se+·Cl F(000) = 2080
Mr = 261.61 Dx = 1.657 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
a = 9.054 (11) Å Cell parameters from 5157 reflections
b = 15.015 (15) Å θ = 2.5–27.0°
c = 30.93 (3) Å µ = 3.79 mm1
β = 94.10 (3)° T = 100 K
V = 4194 (8) Å3 Block, colourless
Z = 16 0.2 × 0.2 × 0.1 mm

Data collection

Bruker D8 Venture diffractometer 6328 reflections with I > 2σ(I)
φ and ω scans Rint = 0.092
Absorption correction: multi-scan (SADABS; Krause et al., 2015) θmax = 27.5°, θmin = 1.5°
Tmin = 0.499, Tmax = 0.746 h = −11→10
25216 measured reflections k = −17→19
9604 independent reflections l = −34→40

Refinement

Refinement on F2 0 restraints
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.080 H-atom parameters constrained
wR(F2) = 0.192 w = 1/[σ2(Fo2) + (0.0572P)2 + 24.4862P] where P = (Fo2 + 2Fc2)/3
S = 1.10 (Δ/σ)max < 0.001
9604 reflections Δρmax = 1.77 e Å3
477 parameters Δρmin = −1.49 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Se1 0.47831 (10) 0.56571 (5) 0.44129 (3) 0.0188 (2)
N1 0.2029 (8) 0.5041 (4) 0.4321 (2) 0.0158 (14)
N2 0.3169 (8) 0.6405 (4) 0.4298 (2) 0.0208 (15)
C1 0.3415 (9) 0.4706 (5) 0.4407 (2) 0.0157 (16)
C2 0.3662 (10) 0.3806 (5) 0.4468 (2) 0.0215 (19)
H2 0.463568 0.358285 0.452949 0.026*
C3 0.2475 (10) 0.3244 (5) 0.4437 (3) 0.0225 (19)
H3 0.262519 0.262247 0.447472 0.027*
C4 0.1014 (10) 0.3578 (5) 0.4348 (3) 0.0231 (19)
H4 0.019521 0.318133 0.432535 0.028*
C5 0.0794 (10) 0.4484 (5) 0.4294 (3) 0.0226 (18)
H5 −0.017461 0.472085 0.423951 0.027*
C6 0.1954 (10) 0.5998 (5) 0.4265 (3) 0.0182 (17)
C7 0.0449 (10) 0.6424 (5) 0.4148 (3) 0.0228 (19)
H7 −0.006834 0.606091 0.391248 0.027*
C8 −0.0552 (10) 0.6457 (6) 0.4531 (3) 0.029 (2)
H8A −0.059140 0.586592 0.466403 0.043*
H8B −0.155223 0.664066 0.442583 0.043*
H8C −0.014747 0.688650 0.474718 0.043*
C9 0.0689 (12) 0.7371 (6) 0.3968 (3) 0.037 (2)
H9A 0.112941 0.775243 0.420018 0.055*
H9B −0.026482 0.762078 0.385810 0.055*
H9C 0.135472 0.733964 0.373246 0.055*
Se2 0.99777 (10) 0.98507 (5) 0.43039 (3) 0.0206 (2)
N3 0.7271 (7) 1.0382 (4) 0.4473 (2) 0.0155 (14)
N4 0.8305 (9) 0.9161 (4) 0.4154 (2) 0.0240 (16)
C10 0.8686 (10) 1.0696 (5) 0.4521 (2) 0.0201 (17)
C11 0.9007 (10) 1.1530 (5) 0.4712 (3) 0.0224 (18)
H11 0.999354 1.174702 0.474969 0.027*
C12 0.7821 (10) 1.2025 (5) 0.4842 (3) 0.0223 (18)
H12 0.799270 1.260398 0.495885 0.027*
C13 0.6357 (10) 1.1680 (5) 0.4805 (3) 0.0204 (18)
H13 0.556089 1.201547 0.490621 0.024*
C14 0.6109 (10) 1.0862 (5) 0.4623 (3) 0.0217 (18)
H14 0.513573 1.062152 0.459912 0.026*
C15 0.7132 (10) 0.9517 (5) 0.4276 (3) 0.0217 (18)
C16 0.5614 (10) 0.9090 (5) 0.4235 (3) 0.0244 (19)
H16 0.515032 0.917789 0.451551 0.029*
C17 0.5773 (12) 0.8075 (6) 0.4161 (4) 0.043 (3)
H17A 0.631217 0.797054 0.390244 0.065*
H17B 0.478756 0.780391 0.412147 0.065*
H17C 0.631904 0.780693 0.441382 0.065*
C18 0.4603 (12) 0.9510 (6) 0.3879 (3) 0.034 (2)
H18A 0.468793 1.015964 0.389582 0.051*
H18B 0.357698 0.933378 0.391448 0.051*
H18C 0.489245 0.930671 0.359565 0.051*
Se3 0.26260 (10) 0.42116 (5) 0.32555 (3) 0.01773 (19)
N5 0.5420 (8) 0.4775 (4) 0.3319 (2) 0.0199 (15)
N6 0.4195 (9) 0.3446 (4) 0.3392 (2) 0.0226 (16)
C19 0.4032 (9) 0.5118 (5) 0.3232 (3) 0.0178 (16)
C20 0.3850 (10) 0.6028 (5) 0.3142 (3) 0.0198 (17)
H20 0.288959 0.626641 0.307443 0.024*
C21 0.5068 (10) 0.6569 (5) 0.3152 (3) 0.0232 (19)
H21 0.495070 0.718889 0.309785 0.028*
C22 0.6498 (11) 0.6212 (6) 0.3244 (3) 0.027 (2)
H22 0.734293 0.658728 0.324740 0.033*
C23 0.6658 (10) 0.5327 (5) 0.3327 (3) 0.0218 (18)
H23 0.761829 0.508431 0.339056 0.026*
C24 0.5435 (10) 0.3829 (5) 0.3405 (3) 0.0193 (17)
C25 0.6916 (10) 0.3370 (6) 0.3495 (3) 0.026 (2)
H25 0.754221 0.373184 0.370862 0.031*
C26 0.7723 (11) 0.3267 (6) 0.3083 (3) 0.030 (2)
H26A 0.707544 0.296467 0.286124 0.045*
H26B 0.862308 0.291312 0.314442 0.045*
H26C 0.798948 0.385609 0.297642 0.045*
C27 0.6644 (12) 0.2436 (6) 0.3695 (3) 0.034 (2)
H27A 0.595387 0.209768 0.349877 0.050*
H27B 0.622106 0.250876 0.397530 0.050*
H27C 0.758506 0.211384 0.373494 0.050*
Se4 1.25396 (10) 0.52189 (5) 0.20254 (3) 0.0204 (2)
N7 0.9756 (8) 0.4644 (4) 0.1977 (2) 0.0195 (15)
N8 1.0966 (8) 0.5971 (4) 0.1871 (2) 0.0213 (15)
C28 1.1139 (9) 0.4318 (5) 0.2066 (3) 0.0187 (17)
C29 1.1317 (10) 0.3407 (5) 0.2175 (3) 0.0226 (19)
H29 1.227441 0.316755 0.224650 0.027*
C30 1.0089 (11) 0.2875 (5) 0.2175 (3) 0.025 (2)
H30 1.020121 0.225748 0.223666 0.030*
C31 0.8675 (10) 0.3229 (6) 0.2085 (3) 0.0253 (19)
H31 0.782837 0.285610 0.209118 0.030*
C32 0.8512 (9) 0.4109 (5) 0.1990 (3) 0.0201 (17)
H32 0.755249 0.435634 0.193195 0.024*
C33 0.9714 (10) 0.5569 (5) 0.1863 (2) 0.0205 (18)
C34 0.8239 (10) 0.6012 (5) 0.1729 (3) 0.0220 (18)
H34 0.766938 0.559546 0.152766 0.026*
C35 0.7292 (10) 0.6186 (6) 0.2117 (3) 0.027 (2)
H35A 0.783686 0.657512 0.232708 0.040*
H35B 0.707740 0.561863 0.225694 0.040*
H35C 0.636091 0.647310 0.201416 0.040*
C36 0.8505 (10) 0.6869 (5) 0.1477 (3) 0.028 (2)
H36A 0.755127 0.712260 0.136934 0.042*
H36B 0.909601 0.673383 0.123245 0.042*
H36C 0.903625 0.729918 0.166944 0.042*
Cl1 0.7227 (2) 0.43621 (13) 0.45609 (7) 0.0235 (4)
Cl2 1.2466 (2) 1.08940 (12) 0.46641 (7) 0.0237 (4)
Cl3 0.0233 (2) 0.54927 (12) 0.30482 (7) 0.0218 (4)
Cl4 1.4889 (2) 0.39388 (13) 0.22603 (7) 0.0227 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Se1 0.0212 (5) 0.0144 (4) 0.0206 (4) −0.0026 (3) −0.0009 (3) −0.0022 (3)
N1 0.020 (4) 0.016 (3) 0.011 (3) 0.000 (3) −0.001 (3) −0.002 (2)
N2 0.030 (4) 0.016 (3) 0.016 (4) 0.000 (3) −0.003 (3) −0.005 (3)
C1 0.017 (4) 0.019 (4) 0.010 (4) −0.003 (3) 0.000 (3) −0.003 (3)
C2 0.033 (5) 0.019 (4) 0.012 (4) 0.000 (4) −0.004 (4) 0.001 (3)
C3 0.031 (5) 0.018 (4) 0.018 (4) −0.008 (4) 0.001 (4) −0.003 (3)
C4 0.025 (5) 0.019 (4) 0.025 (5) −0.003 (4) −0.001 (4) −0.003 (3)
C5 0.018 (5) 0.029 (4) 0.020 (4) −0.001 (4) −0.001 (3) −0.002 (3)
C6 0.024 (5) 0.011 (3) 0.019 (4) 0.003 (3) −0.003 (3) −0.001 (3)
C7 0.022 (5) 0.025 (4) 0.020 (4) 0.008 (4) −0.004 (4) 0.001 (3)
C8 0.023 (5) 0.025 (4) 0.039 (6) 0.002 (4) 0.009 (4) −0.005 (4)
C9 0.042 (7) 0.036 (5) 0.032 (6) 0.015 (5) 0.001 (5) 0.007 (4)
Se2 0.0193 (5) 0.0179 (4) 0.0244 (5) 0.0017 (3) −0.0002 (3) −0.0009 (3)
N3 0.013 (3) 0.016 (3) 0.018 (4) 0.004 (3) −0.001 (3) −0.002 (2)
N4 0.030 (4) 0.019 (3) 0.023 (4) 0.003 (3) −0.003 (3) −0.003 (3)
C10 0.027 (5) 0.022 (4) 0.010 (4) 0.001 (4) −0.004 (3) 0.004 (3)
C11 0.026 (5) 0.023 (4) 0.018 (4) −0.007 (4) −0.006 (4) 0.002 (3)
C12 0.023 (5) 0.020 (4) 0.023 (5) −0.001 (4) 0.000 (4) 0.000 (3)
C13 0.020 (5) 0.021 (4) 0.021 (4) 0.006 (3) 0.000 (3) −0.001 (3)
C14 0.018 (4) 0.018 (4) 0.029 (5) 0.002 (3) 0.001 (4) 0.003 (3)
C15 0.032 (5) 0.017 (4) 0.015 (4) −0.002 (4) −0.007 (4) 0.002 (3)
C16 0.021 (5) 0.026 (4) 0.025 (5) −0.005 (4) 0.001 (4) −0.001 (3)
C17 0.039 (7) 0.032 (5) 0.058 (8) −0.010 (5) −0.003 (5) −0.009 (5)
C18 0.038 (6) 0.041 (5) 0.022 (5) −0.005 (5) −0.006 (4) −0.007 (4)
Se3 0.0200 (4) 0.0133 (4) 0.0197 (4) −0.0013 (3) −0.0001 (3) −0.0003 (3)
N5 0.021 (4) 0.023 (3) 0.016 (4) 0.002 (3) −0.002 (3) −0.003 (3)
N6 0.032 (5) 0.016 (3) 0.020 (4) 0.000 (3) 0.002 (3) 0.001 (3)
C19 0.018 (4) 0.017 (4) 0.019 (4) 0.005 (3) 0.003 (3) 0.000 (3)
C20 0.024 (5) 0.013 (4) 0.023 (4) 0.001 (3) −0.001 (3) 0.000 (3)
C21 0.025 (5) 0.014 (4) 0.030 (5) 0.001 (3) −0.002 (4) −0.001 (3)
C22 0.029 (5) 0.025 (4) 0.028 (5) −0.010 (4) −0.001 (4) −0.001 (4)
C23 0.015 (4) 0.024 (4) 0.027 (5) 0.000 (3) 0.001 (3) −0.002 (3)
C24 0.027 (5) 0.015 (4) 0.016 (4) 0.005 (3) −0.003 (3) −0.001 (3)
C25 0.023 (5) 0.026 (4) 0.028 (5) 0.002 (4) −0.004 (4) 0.003 (3)
C26 0.027 (6) 0.032 (5) 0.031 (5) 0.011 (4) 0.003 (4) −0.002 (4)
C27 0.039 (6) 0.026 (5) 0.035 (6) 0.010 (4) 0.004 (5) 0.009 (4)
Se4 0.0192 (5) 0.0170 (4) 0.0246 (5) −0.0007 (3) −0.0022 (3) 0.0011 (3)
N7 0.024 (4) 0.015 (3) 0.018 (4) −0.003 (3) −0.003 (3) −0.003 (3)
N8 0.018 (4) 0.015 (3) 0.031 (4) 0.005 (3) 0.000 (3) 0.007 (3)
C28 0.019 (4) 0.019 (4) 0.018 (4) 0.001 (3) −0.003 (3) −0.005 (3)
C29 0.024 (5) 0.018 (4) 0.023 (5) 0.003 (3) −0.011 (4) 0.000 (3)
C30 0.034 (6) 0.019 (4) 0.022 (5) 0.003 (4) −0.007 (4) 0.001 (3)
C31 0.021 (5) 0.026 (4) 0.028 (5) −0.009 (4) −0.001 (4) −0.004 (3)
C32 0.013 (4) 0.025 (4) 0.023 (5) 0.000 (3) −0.001 (3) −0.006 (3)
C33 0.036 (5) 0.012 (4) 0.012 (4) −0.007 (3) −0.002 (4) 0.002 (3)
C34 0.025 (5) 0.023 (4) 0.016 (4) 0.003 (4) −0.007 (4) −0.001 (3)
C35 0.022 (5) 0.024 (4) 0.034 (5) 0.004 (4) 0.000 (4) −0.004 (4)
C36 0.026 (5) 0.018 (4) 0.038 (6) 0.008 (4) −0.008 (4) 0.004 (3)
Cl1 0.0217 (11) 0.0213 (10) 0.0273 (11) 0.0000 (8) 0.0012 (8) −0.0019 (8)
Cl2 0.0184 (11) 0.0191 (9) 0.0332 (12) 0.0000 (8) −0.0020 (9) 0.0056 (8)
Cl3 0.0191 (11) 0.0183 (9) 0.0278 (11) 0.0021 (8) −0.0001 (8) −0.0026 (7)
Cl4 0.0197 (11) 0.0264 (10) 0.0216 (11) 0.0025 (8) −0.0005 (8) 0.0008 (8)

Geometric parameters (Å, º)

Se1—N2 1.857 (7) Se3—N6 1.853 (7)
Se1—C1 1.890 (8) Se3—C19 1.868 (8)
N1—C1 1.360 (10) N5—C19 1.367 (10)
N1—C5 1.394 (10) N5—C23 1.393 (11)
N1—C6 1.448 (9) N5—C24 1.444 (10)
N2—C6 1.256 (11) N6—C24 1.260 (11)
C1—C2 1.381 (11) C19—C20 1.402 (10)
C2—H2 0.9500 C20—H20 0.9500
C2—C3 1.364 (12) C20—C21 1.369 (12)
C3—H3 0.9500 C21—H21 0.9500
C3—C4 1.422 (12) C21—C22 1.411 (12)
C4—H4 0.9500 C22—H22 0.9500
C4—C5 1.383 (11) C22—C23 1.359 (11)
C5—H5 0.9500 C23—H23 0.9500
C6—C7 1.526 (11) C24—C25 1.516 (12)
C7—H7 1.0000 C25—H25 1.0000
C7—C8 1.542 (12) C25—C26 1.523 (12)
C7—C9 1.549 (12) C25—C27 1.559 (12)
C8—H8A 0.9800 C26—H26A 0.9800
C8—H8B 0.9800 C26—H26B 0.9800
C8—H8C 0.9800 C26—H26C 0.9800
C9—H9A 0.9800 C27—H27A 0.9800
C9—H9B 0.9800 C27—H27B 0.9800
C9—H9C 0.9800 C27—H27C 0.9800
Se2—N4 1.866 (8) Se4—N8 1.854 (7)
Se2—C10 1.882 (8) Se4—C28 1.865 (8)
N3—C10 1.363 (11) N7—C28 1.354 (11)
N3—C14 1.383 (10) N7—C32 1.386 (10)
N3—C15 1.437 (10) N7—C33 1.433 (9)
N4—C15 1.270 (11) N8—C33 1.283 (11)
C10—C11 1.407 (11) C28—C29 1.415 (11)
C11—H11 0.9500 C29—H29 0.9500
C11—C12 1.389 (12) C29—C30 1.369 (12)
C12—H12 0.9500 C30—H30 0.9500
C12—C13 1.420 (12) C30—C31 1.396 (12)
C13—H13 0.9500 C31—H31 0.9500
C13—C14 1.364 (11) C31—C32 1.361 (11)
C14—H14 0.9500 C32—H32 0.9500
C15—C16 1.513 (12) C33—C34 1.522 (12)
C16—H16 1.0000 C34—H34 1.0000
C16—C17 1.550 (12) C34—C35 1.546 (12)
C16—C18 1.518 (12) C34—C36 1.533 (11)
C17—H17A 0.9800 C35—H35A 0.9800
C17—H17B 0.9800 C35—H35B 0.9800
C17—H17C 0.9800 C35—H35C 0.9800
C18—H18A 0.9800 C36—H36A 0.9800
C18—H18B 0.9800 C36—H36B 0.9800
C18—H18C 0.9800 C36—H36C 0.9800
Se1···Cl1 2.957 (4) Se3···Cl3 2.934 (4)
Se1···N1 2.656 (8) Se3···N5 2.661 (8)
Se2···Cl2 2.900 (4) Se4···Cl4 2.920 (4)
Se2···N3 2.664 (7) Se4···N7 2.658 (8)
N2—Se1—C1 87.0 (3) N6—Se3—C19 87.0 (3)
C1—N1—C5 121.0 (7) C19—N5—C23 120.4 (7)
C1—N1—C6 115.1 (7) C19—N5—C24 113.8 (7)
C5—N1—C6 123.9 (7) C23—N5—C24 125.8 (7)
C6—N2—Se1 113.2 (5) C24—N6—Se3 113.0 (5)
N1—C1—Se1 108.5 (5) N5—C19—Se3 109.7 (5)
N1—C1—C2 121.8 (7) N5—C19—C20 120.0 (8)
C2—C1—Se1 129.7 (7) C20—C19—Se3 130.3 (7)
C1—C2—H2 120.8 C19—C20—H20 120.3
C3—C2—C1 118.5 (8) C21—C20—C19 119.4 (8)
C3—C2—H2 120.8 C21—C20—H20 120.3
C2—C3—H3 119.6 C20—C21—H21 119.9
C2—C3—C4 120.8 (8) C20—C21—C22 120.3 (7)
C4—C3—H3 119.6 C22—C21—H21 119.9
C3—C4—H4 120.2 C21—C22—H22 120.2
C5—C4—C3 119.6 (8) C23—C22—C21 119.6 (8)
C5—C4—H4 120.2 C23—C22—H22 120.2
N1—C5—H5 120.8 N5—C23—H23 119.9
C4—C5—N1 118.3 (8) C22—C23—N5 120.2 (8)
C4—C5—H5 120.8 C22—C23—H23 119.9
N1—C6—C7 118.5 (7) N5—C24—C25 118.5 (7)
N2—C6—N1 116.1 (7) N6—C24—N5 116.5 (7)
N2—C6—C7 125.3 (7) N6—C24—C25 124.9 (7)
C6—C7—H7 108.0 C24—C25—H25 109.0
C6—C7—C8 113.3 (7) C24—C25—C26 111.3 (7)
C6—C7—C9 108.9 (7) C24—C25—C27 108.6 (8)
C8—C7—H7 108.0 C26—C25—H25 109.0
C8—C7—C9 110.6 (7) C26—C25—C27 109.8 (7)
C9—C7—H7 108.0 C27—C25—H25 109.0
C7—C8—H8A 109.5 C25—C26—H26A 109.5
C7—C8—H8B 109.5 C25—C26—H26B 109.5
C7—C8—H8C 109.5 C25—C26—H26C 109.5
H8A—C8—H8B 109.5 H26A—C26—H26B 109.5
H8A—C8—H8C 109.5 H26A—C26—H26C 109.5
H8B—C8—H8C 109.5 H26B—C26—H26C 109.5
C7—C9—H9A 109.5 C25—C27—H27A 109.5
C7—C9—H9B 109.5 C25—C27—H27B 109.5
C7—C9—H9C 109.5 C25—C27—H27C 109.5
H9A—C9—H9B 109.5 H27A—C27—H27B 109.5
H9A—C9—H9C 109.5 H27A—C27—H27C 109.5
H9B—C9—H9C 109.5 H27B—C27—H27C 109.5
N4—Se2—C10 87.0 (4) N8—Se4—C28 86.9 (3)
C10—N3—C14 121.0 (7) C28—N7—C32 121.7 (7)
C10—N3—C15 114.3 (7) C28—N7—C33 114.2 (7)
C14—N3—C15 124.6 (7) C32—N7—C33 124.1 (7)
C15—N4—Se2 112.0 (6) C33—N8—Se4 112.3 (5)
N3—C10—Se2 109.3 (5) N7—C28—Se4 110.3 (5)
N3—C10—C11 121.2 (8) N7—C28—C29 119.1 (7)
C11—C10—Se2 129.4 (7) C29—C28—Se4 130.6 (7)
C10—C11—H11 121.4 C28—C29—H29 120.5
C12—C11—C10 117.2 (8) C30—C29—C28 119.1 (8)
C12—C11—H11 121.4 C30—C29—H29 120.5
C11—C12—H12 119.4 C29—C30—H30 119.6
C11—C12—C13 121.2 (8) C29—C30—C31 120.7 (8)
C13—C12—H12 119.4 C31—C30—H30 119.6
C12—C13—H13 120.4 C30—C31—H31 120.1
C14—C13—C12 119.1 (8) C32—C31—C30 119.8 (8)
C14—C13—H13 120.4 C32—C31—H31 120.1
N3—C14—H14 120.0 N7—C32—H32 120.2
C13—C14—N3 120.1 (8) C31—C32—N7 119.6 (8)
C13—C14—H14 120.0 C31—C32—H32 120.2
N3—C15—C16 118.1 (7) N7—C33—C34 119.8 (7)
N4—C15—N3 117.1 (8) N8—C33—N7 116.3 (8)
N4—C15—C16 124.8 (7) N8—C33—C34 123.8 (7)
C15—C16—H16 107.8 C33—C34—H34 107.5
C15—C16—C17 109.6 (8) C33—C34—C35 112.8 (7)
C15—C16—C18 112.5 (7) C33—C34—C36 109.8 (7)
C17—C16—H16 107.8 C35—C34—H34 107.5
C18—C16—H16 107.8 C36—C34—H34 107.5
C18—C16—C17 111.1 (8) C36—C34—C35 111.6 (7)
C16—C17—H17A 109.5 C34—C35—H35A 109.5
C16—C17—H17B 109.5 C34—C35—H35B 109.5
C16—C17—H17C 109.5 C34—C35—H35C 109.5
H17A—C17—H17B 109.5 H35A—C35—H35B 109.5
H17A—C17—H17C 109.5 H35A—C35—H35C 109.5
H17B—C17—H17C 109.5 H35B—C35—H35C 109.5
C16—C18—H18A 109.5 C34—C36—H36A 109.5
C16—C18—H18B 109.5 C34—C36—H36B 109.5
C16—C18—H18C 109.5 C34—C36—H36C 109.5
H18A—C18—H18B 109.5 H36A—C36—H36B 109.5
H18A—C18—H18C 109.5 H36A—C36—H36C 109.5
H18B—C18—H18C 109.5 H36B—C36—H36C 109.5
Se1—N2—C6—N1 −0.2 (9) Se3—N6—C24—N5 0.9 (9)
Se1—N2—C6—C7 −176.5 (6) Se3—N6—C24—C25 −178.1 (6)
Se1—C1—C2—C3 −178.3 (6) Se3—C19—C20—C21 178.7 (7)
N1—C1—C2—C3 0.3 (12) N5—C19—C20—C21 −1.4 (12)
N1—C6—C7—C8 74.0 (9) N5—C24—C25—C26 −73.8 (9)
N1—C6—C7—C9 −162.4 (7) N5—C24—C25—C27 165.2 (7)
N2—Se1—C1—N1 0.8 (5) N6—Se3—C19—N5 0.4 (6)
N2—Se1—C1—C2 179.5 (8) N6—Se3—C19—C20 −179.7 (8)
N2—C6—C7—C8 −109.8 (9) N6—C24—C25—C26 105.2 (10)
N2—C6—C7—C9 13.8 (11) N6—C24—C25—C27 −15.9 (12)
C1—Se1—N2—C6 −0.3 (6) C19—Se3—N6—C24 −0.7 (6)
C1—N1—C5—C4 −1.5 (11) C19—N5—C23—C22 −0.5 (12)
C1—N1—C6—N2 0.9 (10) C19—N5—C24—N6 −0.6 (10)
C1—N1—C6—C7 177.5 (7) C19—N5—C24—C25 178.5 (7)
C1—C2—C3—C4 −0.5 (12) C19—C20—C21—C22 1.3 (13)
C2—C3—C4—C5 −0.2 (13) C20—C21—C22—C23 −0.8 (13)
C3—C4—C5—N1 1.2 (12) C21—C22—C23—N5 0.4 (13)
C5—N1—C1—Se1 179.5 (6) C23—N5—C19—Se3 −179.0 (6)
C5—N1—C1—C2 0.7 (11) C23—N5—C19—C20 1.1 (11)
C5—N1—C6—N2 −179.7 (7) C23—N5—C24—N6 178.4 (7)
C5—N1—C6—C7 −3.2 (11) C23—N5—C24—C25 −2.6 (12)
C6—N1—C1—Se1 −1.1 (8) C24—N5—C19—Se3 0.0 (8)
C6—N1—C1—C2 −180.0 (7) C24—N5—C19—C20 −179.9 (7)
C6—N1—C5—C4 179.3 (7) C24—N5—C23—C22 −179.4 (8)
Se2—N4—C15—N3 4.0 (9) Se4—N8—C33—N7 0.8 (9)
Se2—N4—C15—C16 −175.0 (6) Se4—N8—C33—C34 −177.4 (6)
Se2—C10—C11—C12 179.6 (6) Se4—C28—C29—C30 −179.0 (7)
N3—C10—C11—C12 −0.9 (11) N7—C28—C29—C30 1.8 (12)
N3—C15—C16—C17 −161.4 (7) N7—C33—C34—C35 74.5 (9)
N3—C15—C16—C18 74.5 (10) N7—C33—C34—C36 −160.3 (7)
N4—Se2—C10—N3 1.6 (5) N8—Se4—C28—N7 −1.2 (6)
N4—Se2—C10—C11 −178.9 (8) N8—Se4—C28—C29 179.6 (8)
N4—C15—C16—C17 17.6 (12) N8—C33—C34—C35 −107.3 (9)
N4—C15—C16—C18 −106.5 (10) N8—C33—C34—C36 17.9 (11)
C10—Se2—N4—C15 −3.2 (6) C28—Se4—N8—C33 0.2 (6)
C10—N3—C14—C13 2.9 (12) C28—N7—C32—C31 −1.3 (12)
C10—N3—C15—N4 −2.8 (10) C28—N7—C33—N8 −1.9 (10)
C10—N3—C15—C16 176.3 (7) C28—N7—C33—C34 176.5 (7)
C10—C11—C12—C13 3.2 (12) C28—C29—C30—C31 −2.4 (13)
C11—C12—C13—C14 −2.5 (12) C29—C30—C31—C32 1.1 (13)
C12—C13—C14—N3 −0.7 (12) C30—C31—C32—N7 0.8 (13)
C14—N3—C10—Se2 177.4 (6) C32—N7—C28—Se4 −179.3 (6)
C14—N3—C10—C11 −2.1 (11) C32—N7—C28—C29 0.0 (11)
C14—N3—C15—N4 180.0 (7) C32—N7—C33—N8 179.3 (7)
C14—N3—C15—C16 −1.0 (11) C32—N7—C33—C34 −2.3 (11)
C15—N3—C10—Se2 0.1 (8) C33—N7—C28—Se4 1.9 (8)
C15—N3—C10—C11 −179.5 (7) C33—N7—C28—C29 −178.8 (7)
C15—N3—C14—C13 −180.0 (7) C33—N7—C32—C31 177.4 (7)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C2—H2···Cl1 0.95 2.62 3.327 (10) 132
C3—H3···Cl2i 0.95 2.67 3.598 (9) 167
C5—H5···Cl1ii 0.95 2.67 3.395 (10) 133
C11—H11···Cl2 0.95 2.61 3.288 (10) 129
C14—H14···Cl2ii 0.95 2.47 3.310 (10) 147
C18—H18C···Cl4iii 0.98 2.73 3.687 (11) 167
C20—H20···Cl3 0.95 2.67 3.364 (10) 131
C23—H23···Cl3iv 0.95 2.73 3.418 (10) 130
C29—H29···Cl4 0.95 2.63 3.323 (10) 130
C30—H30···Cl3v 0.95 2.81 3.651 (9) 148
C32—H32···Cl4ii 0.95 2.76 3.452 (9) 131

Symmetry codes: (i) x−1, y−1, z; (ii) x−1, y, z; (iii) −x+2, y+1/2, −z+1/2; (iv) x+1, y, z; (v) −x+1, y−1/2, −z+1/2.

Funding Statement

This work was performed under the support of the Russian Science Foundation (award No. 2273-10007).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989024000938/ex2079sup1.cif

e-80-00247-sup1.cif (907.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989024000938/ex2079Isup2.hkl

e-80-00247-Isup2.hkl (762.2KB, hkl)
e-80-00247-sup3.zip (5.6MB, zip)

Fingerprint plots. DOI: 10.1107/S2056989024000938/ex2079sup3.zip

CCDC reference: 2328546

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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