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. 2024 Mar 7;19(3):e0295409. doi: 10.1371/journal.pone.0295409

Stable demographic ratios of haploid gametophyte to diploid sporophyte abundance in macroalgal populations

Kazuhiro Bessho 1,*
Editor: Satheesh Sathianeson2
PMCID: PMC10919683  PMID: 38451989

Abstract

Macroalgal populations often consist of free-living haploid (gametophyte) and diploid (sporophyte) stages. Various ecological studies have been conducted to examine the demographic diversity of haploid-diploid populations with regard to the dominant stage. Here, I relaxed the assumption of classical research that the life history parameters of haploids and diploids are identical and developed a generalized haploid-diploid model that explicitly accounts for population density dependence and asexual reproduction. Analysis of this model yielded an exact solution for the abundance ratio of haploids to diploids in a population in which the ratio is determined by the balance of four demographic forces: sexual reproduction by haploids, sexual reproduction by diploids, asexual reproduction by haploids, and asexual reproduction by diploids. Furthermore, the persistence of a haploid-diploid population and its total biomass are shown to be determined by the basic reproductive number (R0), which is shown to be a function of these four demographic forces. When R0 is greater than one, the haploid-diploid population stably persists, and the ploidy ratio obtained by the analytical solution is realized.

Introduction

Sexual reproduction in eukaryotes leads to the alternation of two nuclear phases, namely the haploid (n) and diploid (2n). In many plants, algae, and fungi both ploidy stages develop into adult free-living organisms and as such, a biphasic life cycle is observed [17]. Many macroalgae alternate between a free-living haploid generation (the gametophytes) and the free-living diploid generation (the sporophytes).

The life cycle diversity has been interesting in the context of how the evolution from haploidy to diploidy originally occurred [8, 9]. For example, the hypotheses that the diploids have an advantage in masking deleterious mutations [911], that the diploids evolve faster [12, 13], and that the haploids have an advantage in poor-nutrient conditions [1416], have been considered.

Population geneticists have focused primarily on life cycle evolution, whereas many phycologists have been interested in the descriptive study of the macroalgal life cycles. Classically, the type of alternation of generations between two distinct free-living stages is classified as heteromorphic (morphologically distinct from one another) or isomorphic (seemingly identical to each other) [17]. Species with the heteromorphic life cycle show large phenotypic differences (e.g., macroscopic versus microscopic, erect versus crustose). These species also often show different seasonal appearances and habitats [18]. In contrast, the two stages of species with isomorphic life cycle tend to be observed simultaneously and sympatrically [1923].

Because these studies were based on laboratory observations, there was interest in field research. Especially in species with the isomorphic life cycle, gametophytes and sporophytes (tetrasporophytes in red algae) are often observed simultaneously, and their abundances were investigated. Field studies of the ratio of haploid to diploid abundance have shown both haploid-dominant [20, 21, 23] and diploid-dominant [19, 22] populations exist. Different patterns of haploid or diploid dominance have been observed for different populations of the same species, and even over the same population depending on the special location or season [2427]. In their demographic researches, the frequency of each stage [23, 28], the haploid-to-diploid (H:D) ratio [29], and the gametophyte-to-sporpohyte (G:T) ratio [21, 30, 31] were discussed.

Theoretical models have been developed to explain the variety of haploid versus diploid dominance patterns [28, 3038]. Many studies are based on numerical calculations, and few studies derive simple analytical solutions. In particular, the classical study of Thornber and Gaines [28] presented an analytical solution only for the case where haploids (gametophytes) and diploids (tetorasporophytes) have identical survival and growth rates (i.e., ploidy abundance ratio = 2:1).

Although in their classical study, Littler et al. [39] reported the functional similarity in physiological or ecological performances between gametophyte and sporophyte in an isomorphic species, many recent empirical studies have reported various types of functional differences between haploids and diploids. Specifically, chemical composition [40], resistance to physical stress [41], fecundity [22, 28], survivorship [29, 42, 43], resistance to predators [44], resistance to epiphyte infection [45], growth rate [4648], dispersal ability of the reproductive cells [49], and viability of the reproductive cells [50] are reported. Based on these facts, this article analyses a mathematical model that explicitly considers the differences in life history parameters of haploid gametophytes and diploid sporophytes, and aims to express stable ploidy ratios in a haploid-diploid population using a mathematical expression as simple as possible.

In recent years, in addition, the importance of asexual reproduction, which deviates from the normal reproductive process in which gametophytes reproduce sporophytes and sporophytes reproduce gametophytes (see next section), has been pointed out [5153]. Unfortunately, theoretical studies that consider asexual reproduction are limited. Among the few studies, [53] analyze the demographic equilibrium state of a population genetic model that considers sporogenesis, and Vieira and Santos [31, 35] analyze the population structure yield by a matrix model that considers clonal reproduction (i.e., vegetative growth of new fronds from the same holdfast). In addition, this study explicitly considers density dependence, which many previous studies have omitted for simplicity. Many previous studies (e.g., [31]) define the ploidy ratio by the right eigenvector in the matrix model, where the density dependence is ignored and the population size diverges to infinity. In reality, the population size should remain finite and the stable ploidy ratio of this population is important. Vieira et al. [38] develop the individual-based models to investigate population dynamics that consider the realistic density dependence, but the results are complex and analysis of a simpler model is required. Analyzing the model, I investigate the ploidy ratio in a haploid-diploid population with asexuality and if the ploidy ratio is in agreement with the results of previous studies when the parameters are constrained accordingly.

Life cycle of macroalgae

In this section, I briefly review the life cycle diversity in macroalgae (see also [3, 6, 7, 17, 54]), which is the prerequisite knowledge of the models. A diagram of the reproduction process assumed in the model is shown in Fig 1A.

Fig 1. Diagrams of macroalgal life cycles.

Fig 1

(a) A diagram of the reproduction process assumed in the model. (b) A diagram of the alternation of generations between haploid gametophyte and diploid sporophyte (haploid-diploid life cycle). In this diagram, monoecious is assumed. (c) A diagram of the general life cycle of Florideophyceae (triphasic life cycle). (d) A diagram of the asexual reproduction in macroalgae. Red indicates the haploid phase and blue indicates the diploid phase. The circled states are free-living stages.

Alternation of nuclear phases and generations

In sexual eukaryotes, states characterized by one set of chromosomes (1n, haploid) alternate with states characterized by two sets of chromosomes (2n, diploid) through meiosis and zygosis. This "alternation of nuclear phases" often results in the alternation of individuals that exhibit different reproductive patterns during their life cycle, which is referred to as the "alternation of generations". In many macroalgae, haploid multicellular individuals and diploid multicellular individuals appear as part of this alternation of generations (haploid-diploid life cycle). Generally, the former is called "gametophytes" because they reproduce by gametes, and the latter is called "sporophytes" because they reproduce by spores (Fig 1B).

I note that, however, the alternation of generations is not an essential phenomenon in macroalgae. For example, individuals belonging to Fucales, a group of brown algae, are diploid. When they mature, gametogenesis and syngamy occur continuously, and the life cycle is completed as the diploid zygote develops into a multicellular organism again (diploid life cycle). In other words, they do not exhibit alternation of generations.

Heteromorphic and isomorphic life cycles

When we focus on the appearance of macroalgal gametophytes and sporophytes, they are often very different in morphology. Extreme examples include species of Laminariales, in which macroscopic sporophytes alternate with microscopic gametophytes, and the species of Scytosiphonales, in which erect gametophytes alternate with crustose sporophytes. This mode of alternation of generations is called “heteromorphic” alternation of generations. On the other hand, (especially immature) gametophytes and sporophytes are often so similar that they are indistinguishable (e.g., Ulva), and such an alternation of generations is called “isomorphic” alternation of generations [17]. The life cycle characterized by the heteromorphic (isomorphic) alternation of generations is called the heteromorphic (isomorphic) life cycle.

I note that the difference between gametophytes and sporophytes is sometimes less extreme. In the brown algae Ectocarpus, for example, both gametophytes and sporophytes are small and filamentous, but there is a substantial morphological difference between them. This species is classified as “heteromorphic (near-isomorphic)” [51]. The accumulation of empirical studies showing that gametophyte and sporophyte (or tetrasporphyte of red algae) phenotypes differ (morphologically, ecophysiologically, or biomechanically) calls into question the classical classification of the life cycle into heteromorphic and isomorphic categories.

Triphasic life cycle in red macroalgae

When we consider macroalgal life cycle, we generally assume alternation of generations between haploid gametophytes and diploid sporophytes (biphasic life cycle). Among red algae, however, many species from the Florideophyceae are known to exhibit more complex life cycles. Here, syngamy occurs when a haploid sperm without flagella (spermatium) attaches to haploid female gametes (carpogonium) that attaches on the female gametophyte. This fertilized cell develops into diploid multicellular structure, the carposporophyte. First, the carposporophyte produces diploid carpospores by somatic cell division. Only later they are released and these develop into free-living diploid sporophytes, tetrasporophytes. Finally, the tetrasporophyte produces haploid tetraspores by meiosis, and these develop into gametophytes to complete their life cycle. Their life cycle involves three “phases” of haploid gametophyte, diploid carposporophyte, and diploid tetrasporophyte, so this can be called a "triphasic" life cycle [55].

Because the ploidy of carposporphyte (diploid) is different from gametophyte (haploid), the caposporophyte is recognized as a distinguishable phase, but is nutritionally dependent (parasitic) on the female gametophyte [56]. Hence, if we consider that carposporophytes have little effect on the ecological properties of the species, the triphasic life cycle of red algae can be approximated as a biphasic life cycle alternating only between gametophyte and tetrasporophyte (Fig 1C).

Asexual reproduction in macroalgae

In classical ecology and evolutionary researches about the macroalgal life cycle, researchers assume obligate sexuality, with gametophytes reproducing sporophytes and sporophytes reproducing gametophytes (e.g., [9, 57]). However, many macroalgae exhibit complex reproductive strategies, including asexual reproduction (e.g., [51]). Examples include parthenogenesis, in which gametes that fail to syngamy develop into gametophytes, asexual multiplication of gametophytes by monospores, asexual multiplication of sporophytes by mitospores, and vegetative growth (e.g., the growth of new fronds from the same holdfast or from broken fragments) (Fig 1D).

For simplicity, this article models asexual reproduction, as processes in which haploid gametophytes reproduce haploid gametophytes and diploid sporophytes reproduce diploid sporophytes by special reproductive cells (e.g., mitospores). I note, however, that it is also known that “haploid sporophytes” reproduced by haploid gametophytes and “diploid gametophytes” reproduced by diploid sporophytes are observed in empirical conditions [58, 59].

Model

Population dynamics without density dependence

First, the population dynamics of a haploid-diploid population without density dependence is analyzed by updating the matrix model [28]. The haploid (H) and diploid (D) densities are forecasted to time t+1 from their realized densities at time t and their vital rates:

(H(t+1)D(t+1))=(1+γHbHaHmHγHbD(1aD)γDfbH2(1aH)1+γDbDaDmD)(H(t)D(t)). (1)

Here, the survivorship of haploid and diploid reproductive cells (tetraspores and carpospores for red algal species) while suspended in the water column is γH and γD, respectively; the fecundity of the haploid and diploid stages per individual is bH and bD, respectively; and the mortality rates of haploids and diploids are mH and mD (adult survival is 1—m), respectively. The bH is the fecundity rate of haploid females (production of carposporophytes for red algal species). However, not all haploids are females as some are males. Assuming a 1:1 sex ratio, 1/2 of the haploids are females (or we can also assume the species is monoecious). Hence, in the matrix model, haploid fecundity is bH/2. Then, comes the reproductive cost (the probability of fertilization success) f, leading to fbH/2. In the following analysis, I assume this cost (cost of sex) is defined as σ = f/2. Fractions aH and aD of the reproductive outputs of the haploid and diploid stages are asexual, skipping the sexual loop and developing directly into haploids and diploids (sporogenesis). When aH = aD = 0, Eq (1) describes the case of a fully sexual (obligate sexual) system [28]. The dominance patterns of two stages following spatial or seasonal patterns are often observed in the field, however for tractability, constant life history parameters and a well-mixed population are assumed.

Population dynamics with density dependence

A density-dependent population of macroalgae that consists of haploids and diploids can be described by the following differential equations:

dHdt=γHϕ(t)mH[1+δ(H(t)+D(t))]H(t), (2A)
dDdt=γDψ(t)mD[1+δ(H(t)+D(t))]D(t), (2B)
ϕ(t)=bHaHH(t)+bD(1aD)D(t), (2C)
ψ(t)=σbH(1aH)H(t)+bDaDD(t), (2D)

where ϕ(ψ) indicate the number of haploid (diploid) offspring at time t. Here, the mortality rate is assumed to increase with the biomass of the population (H(t)+D(t)) at rate δ. When population dynamics are modeled with density dependence, other modes of action, besides increasing mortality, should be considered (e.g., decreasing fecundity). Other types of density dependence are considered in Appendix D in S1 Appendix.

Results

Ploidy ratios with a density-independent model

With a density-independent model, the population size increases exponentially. In this model, the right leading eigenvector, which gives the stable distribution of haploid and diploid abundances in the population, is conceptually equivalent to the stable age distribution in the Leslie matrix model.

The eigenvalues and right eigenvectors for the full model are provided in the S1 File. The haploid frequency in the population, ρH, can be calculated as follows:

ρH=(mDmH)+wHAmH+wDAmD2(wDSmH+wDAmD)+4wHSwDSmHmD+[(mDmH)+wHAmHwDAmD]22[(mDmH)+wHAmH+wHSmDwDAmDwDSmH], (3)

where the fitness components of haploids and diploids are defined as,

wHA=(bHaHγH)/mH,wDA=(bDaDγD)/mD,wHS=[bH(1aH)σγD]/mD, and wDS=[bD(1aD)γH]/mH, and the superscripts S and A refer to sexual and asexual reproduction, respectively. Note that the fitness components for sexual reproduction (wHS and wDS) is defined by the mortality of different ploidy individuals. This is because the reproductive cells for sexual reproduction reproduced by individuals of focal generation (e.g., haploid) will develop to the opposite generation (e.g., diploid), so mortality should be different from the focal individual.

If the species has an “ideal” isomorphic life cycle and exhibits full sexuality (obligate sexuality), the number of parameters can be reduced as follows: γH = γD, mH = mD, bH = bD, aH = 0, and aD = 0. In this case, the haploid (H¯) to diploid (D¯) ratio in asymptotic density is,

H¯:D¯=1:σ. (4)

If the cost of fertilization is ignored (f = 1), then σ = 1/2 and Eq (4) is the same as the classical ploidy ratio of 2:1 ([28], p. 1664).

If the fecundity of haploids is assumed to be twice that of diploids, because the haploid cell size tends to be half the diploid cell size, then γ = γH = γD, m = mH = mD, and bH = 2bD, and the ploidy ratio is,

H¯:D¯=1:2σ. (5)

If the cost of fertilization is ignored (f = 1), then σ = 1/2 and the ploidy ratio in this case is 1:1.

Ploidy ratio of a fully sexual species with density dependence

In the density-independent model, population size increases infinitely, which is unrealistic. To avoid this problem, the density-dependent model is analyzed next. For tractability, the model for a species that exhibits full sexuality (aH = aD = 0) is analyzed first. In this case, strict solutions for both biomass (T=H^+D^) and haploid frequency (ρH=H^/(H^+D^)) are obtained at population equilibrium (H^,D^),

T=wHwD1δandρH=wDwH+wD. (6)

Here, the fitness of haploids and diploids is defined as wH = (σbHγD)/mD and wD = (bDγH)/mH, respectively. Note that the mortality rate in the fitness of haploids (wH) should be defined by the diploid mortality (mD), and vice versa. This is for exactly the same reason as the definition of the fitness components in the full model (wHS and wDS).

This haploid frequency (ρH in Eq 6) is equivalent to the haploid-diploid equilibrium frequency in the Wright-Fisher model in Bessho and Otto ([60]; their Eq (D2)). Furthermore, the haploid frequency, ρH, can also be represented as follows:

ρH=(bDγH)/mH(σbHγD)/mD+(bDγH)/mH=[(bDγH)mD)[f(bHγD)mH]/2+[(bDγH)mD].

This haploid frequency is the same as that in the Moran model in Bessho and Otto ([60]; their Eq (A8b)).

Note that when the mortalities of haploids and diploids are equal, ρH/ρD=wD/wH becomes bDγH/σbHγD, which is the gametophyte-to-sporophyte ratio in Fierst et al. ([30], their Eq (15))

Parameter dependence in species with obligate sexuality

The basic reproductive number of species with obligate sexuality is the geometric mean of haploid fitness and diploid fitness, R0=wHwD (Appendix C2 in S1 Appendix). Thus, the equilibrium biomass calculated using this measure is,

T=R01δ (7)

Thus, the biomass (total population size) holds constant at a positive value at equilibrium when R0>1. Furthermore, when R0>1, the trivial equilibrium, (0, 0), is unstable and the haploid-diploid population exists stably as in Eq (6) (Appendixes B3 and B4 in S1 Appendix).

Fig 2 illustrates the parameter dependence of the haploid frequency ρH and equilibrium biomass, scaling the population size by δ in Eq (7) (i.e., T˜=Tδ=R01; hereafter, the biomass measure). The ploidy ratio and biomass both depend on haploid fitness (wH) and diploid fitness (wD). Because haploids reproduce diploid individuals and vice versa, haploids are dominant in a population with higher diploid fitness. Note, however, that fitnesses are defined by the mortality of opposite ploidy individuals (see the definition). For example, a high haploid mortality rate (high mH) reduces the diploid fitness (low wD) and consequently increases the frequency of diploids (low ρH).

Fig 2. The haploid frequency ((ρH=H^/(H^+D^)) and the biomass measure (T˜=R01) in a population of a species with obligate sexuality (aH = aD = 0).

Fig 2

(a) Haploid frequency curves; the red line represents the case that the haploid fraction constitutes exactly half of the population (ρH = 0.5). (b) Curves for the biomass measure. The red line represents the case that R0 is exactly equal to one (T˜=0). Population extinction occurs in the region where T˜ is negative. (c) The haploid frequency as a function of haploid fitness (wH) for different values of diploid fitness (wD). Dashed lines indicate values for extinct populations (T˜<0). (d) The biomass measure as a function of haploid fitness (wH) for different values of diploid fitness (wD).

Ploidy ratio in asexually reproducing species under density dependence

For asexually reproducing species, strict solutions for biomass (T=H^+D^) and haploid frequency (ρH=H^/(H^+D^)) are obtained at the population equilibrium (H^,D^) (see details in the S1 File),

T=1δ[(wDAwHA2)2+wHSwDS+wHA+wDA21], (8A)
ρH=wHAwDA2wDS+wHSwDS+(wHAwDA2)2wHA+wHSwDAwDS, (8B)

where I define the fitness components of haploids and diploids as follows:

wHA=(bHaHγH)/mH,wDA=(bDaDγD)/mD,wHS=[bH(1aH)σγD]/mD and wDS=[bD(1aD)γH]/mH.

When the fitness components of asexual reproduction are equal between haploids and diploids, wHA=wDA, haploid frequency is simply,

ρH=wDSwHS+wDS. (9)

Interestingly, the ploidy ratio in the density-dependent model, Eq (8B), is equivalent to that in the density-independent model (3) when the mortalities of the haploid and diploid stages are equal (mH = mD).

If equal survivorships of the reproductive cells are assumed (γ = γH = γD) along with equal mortality rates (m = mH = mD), then the reproductive parameters can be simplified and the ploidy ratio at equilibrium becomes

ρH=aHb˜H+aDb˜D2b˜D+4(1aH)(1aD)σb˜Hb˜D+(aHb˜HaDb˜D)22[aHb˜H+(1aH)σb˜Hb˜D], (10)

where b˜H=(bHγ)/m and b˜D=(bDγ)/m. Eq (10) is the equilibrium ploidy ratio in Bessho and Otto ([53], their Eq (A.4)). Given that they were using the Wright-Fisher model and thus ignored differences in mortality between haploids and diploids, this match makes sense.

Parameter dependence of asexually reproducing species

For tractability, consider first the case where the fitness components of haploids and diploids are symmetrical for both sexual and asexual reproduction, wS=wHS=wDS and wA=wHA=wDA. Under this condition, the basic reproductive number is the sum of the fitness components of sexual and asexual reproduction, R0 = wA+wS. When this measure is larger than one, the trivial equilibrium is unstable, and the nontrivial equilibrium is stable (Appendix C1 in S1 Appendix).

If the assumption of symmetry is relaxed, the basic reproductive number (R0) becomes somewhat more complicated (see Eq (C.6)), but Eq (7) still hold. Unfortunately, it is not possible to simplify the stability condition, so it was checked numerically. It can be concluded that this haploid-diploid system never shows bistability and oscillation. When the basic reproductive number is larger than one (R0>1), the trivial equilibrium becomes unstable and the dynamics approaches a nontrivial equilibrium in which the haploid frequency is described by Eq (8B).

Figs 37 illustrate the parameter dependence of the haploid frequency (ρH) and the biomass measure (T˜=R01). Both the ploidy ratio and biomass depend on the fitness components (wHS,wDS,wHA, and wDA). Because asymmetry between haploids and diploids (i.e., the cost of sex, σ) is absorbed into the transformed parameter wHS, the relationship between haploids and diploids becomes symmetrical when comparing the w’s.

Fig 3. Haploid frequency (ρH=H^/(H^+D^)) in a population of a species with asexual reproduction when the fitness components for asexual reproduction (wHA and wDA) are given.

Fig 3

(a),(b), and (c) Haploid frequency curves. The red lines represent the case where the haploid fraction constitutes exactly half of the population (ρH = 0.5). (d),(e), and (f) The haploid frequency as a function of the haploid fitness component for sexual reproduction (wHS) for different values for the diploid fitness component for sexual reproduction (wDS). Dashed lines indicate values for extinct populations (T˜<0). The given parameter values are (a),(d) wHA=0.8 and wDA=0.2; (b),(e) wHA=0.5 and wDA=0.5; and (c),(f) wHA=0.2 and wDA=0.8.

Fig 7. The biomass measure (T˜=R01) in a population of a species with asexual reproduction when the fitness components for sexual reproduction (wHS and wDS) are given.

Fig 7

(a),(b) Curves of the biomass measure. (c),(d) The biomass measure as a function of the haploid fitness component for asexual reproduction (wHA) for different values of the diploid fitness component for asexual reproduction (wDA). The given parameter values are (a),(c) wHS=0.5 and wDS=0.5, and (b),(d) wHS=3.0 and wDS=3.0.

Fig 6. The biomass measure (T˜=R01) in a population of a species with asexual reproduction when the fitness components for sexual reproduction (wHS and wDS) are given.

Fig 6

(a),(b), and (c) Curves for the biomass measure. The red lines represent the case that R0 is exactly equal to one (T˜=0). (d),(e), and (f) The biomass measure as a function of the haploid fitness component for asexual reproduction (wHA) for different values of the diploid fitness component for asexual reproduction (wDA). The given parameter values are the same as in Fig 5.

The parameter dependence of the fitness components for sexual reproduction (Figs 3 and 4) can be understood by comparing to the case of obligate sexuality (Fig 2). As shown by Eq (9), when the asexual fitness of the species is symmetrical between haploids and diploids (wHA=wDA), the parameter dependence is similar to that for an obligate sexual species (Figs 3B, 3E, 4B, and 4E). When the asexuality of haploids is stronger than that of diploids (wHA>wDA), then the region in which the haploid fraction is dominant in the population (ρH>0.5) becomes larger. The reverse (wHA<wDA) is also true.

Fig 4. The biomass measure (T˜=R01) in a population of a species with asexual reproduction when the fitness components for asexual reproduction (wHA and wDA) are given.

Fig 4

(a),(b), and (c) Curves for the biomass measure. The red lines represent the case that R0 is exactly equal to one (T˜=0). (d), (e), and (f) The biomass measure as a function of the haploid fitness component for sexual reproduction (wHS) for different values of the diploid fitness component for sexual reproduction (wDS). The given parameter values are the same as in Fig 3.

Interestingly, the haploid frequency in a population, ρH, depends on the difference in the fitness components for asexual reproduction, wHAwDA, when wHS and wDS are fixed. Hence, the slopes of the haploid frequency curves become one (Fig 5A–5C). This result means that the ploidy ratio in a haploid-diploid population can be described by three parameters (see Eq (8B), which depends on the sexual fitnesses only through wHAwDA). When the haploid frequency is illustrated as a function of the difference in the fitness components for asexual reproduction (wHAwDA), the curves are sigmoidal (Fig 5G).

Fig 5. The haploid frequency (ρH=H^/(H^+D^)) in a population of a species with asexual reproduction when the fitness components for sexual reproduction (wHS and wDS) are given.

Fig 5

(a),(b), and (c) Haploid frequency curves. The red lines represent the case that the haploid fraction constitutes exactly half of the population (ρH = 0.5). (d),(e), and (f) The haploid frequency as a function of the haploid fitness component for asexual reproduction (wHA) for different values of the diploid fitness component for asexual reproduction (wDA). Dashed lines indicate values for extinct populations (T˜<0). (g) The haploid frequency as a function of the difference in the fitness components for asexual reproduction (wHAwDA). The given parameter values are (a),(d) wHS=0.8 and wDS=0.2; (b),(e) wHS=0.5 and wDS=0.5; and (c),(f) wHS=0.2 and wDS=0.8.

When the fitness components for asexual reproduction of haploids and diploids are similar (wDAwHA), then the basic reproductive number can be approximated by the sum of the geometric mean of the fitness components for sexual reproduction and the arithmetic mean of the fitness components for asexuality, R0wHSwDS+(wHA+wDA)/2 (see Eq (C.6)). Hence, when the fitness components for asexual reproduction are given, the biomass measure (T˜=R01) is a function of the geometric mean of the fitness components for sexual reproduction (Fig 4).

Of course, this approximation breaks down when the difference in the fitness components for asexual reproduction is large. If the fitness components for asexual reproduction are much larger than those for sexual reproduction (wHA,wDAwHS,wDS), then the approximation, R0wDA (when wDA>wHA), holds. Thus, the biomass is dominated by the largest fitness component (Fig 7).

Discussion

Ploidy ratio in a haploid-diploid population

Mixtures of free-living haploid gametophytes and diploid sporophytes are widely observed in macroalgal populations. This article presents a general haploid-diploid model that explicitly accounts for density dependence and asexual reproduction and can be used to obtain an exact solution for the ratio of haploid gametophytes to diploid sporophytes in a population at steady state. The analysis (Eq 8B) reveals that the proportions of gametophytes and sporophytes in a wild population are determined by the balance of four fitness components: sexual reproduction of haploids (wHS), sexual reproduction of diploids (wDS), asexual reproduction of haploids (wHA), and asexual reproduction of diploids (wDA). Furthermore, the difference in the asexual demographic force (wHAwDA) is important. Because all life history parameters (i.e., fecundity, mortality, survivorship of reproductive cells, and the cost of sexuality) are embedded in these fitness components, the composition of a haploid-diploid population is entirely determined by three parameters (wHS,wDS, and wHAwDA). I note that the ploidy ratio that is obtained is robust to changes in the mode of competition (Appendix D in S1 Appendix).

The result is consistent with the ploidy ratios reported by previous studies for the special cases considered. For example, the classical haploid-to-diploid ratio of Thornber and Gaines [28], 2:1, is consistent with Eq (8B) when the life history parameters of two stages are assumed to be identical (“ideal” isomorphy). The equilibrium ploidy ratios in the Wright-Fisher and Moran population genetic models [53, 60] also correspond to a special case of Eq (8B).

In summary, the model presented here generalizes the findings of previous studies [28, 30, 53, 60] and mathematically demonstrates the intuitive conclusion that the frequency of haploidy in a population is determined by the balance of fitness components, with sexual reproduction in a haploid or diploid individual leading to an increase in the other’s frequency and asexual reproduction in a haploid or diploid leading to an increase in its own frequency. It should be noted, however, that the fitness component for sexual reproduction in our analysis is defined by the mortality rates of the opposite ploidy stage. For example, an increase in haploid mortality decreases the fitness component of haploid for the asexual reproduction while simultaneously decreasing the fitness component of diploid for the sexual reproduction.

Stability and biomass of haploid-diploid populations

Despite the fact that two-dimensional systems of differential equations with density dependence may exhibit a variety of dynamics, including bistability and oscillations, previous research has lacked studies of population stability (e.g., [61]). With the help of numerical calculations, the dynamics of a haploid-diploid population has been found to exhibit a stable equilibrium state without oscillations in the parameter region in which the population exists (positive biomass).

Furthermore, the persistance of a population and the equilibirum population size depend critically on the basic reproductive number, R0 (Eq (C.6)). In particular, when the fitness components for asexual reproduction of haploids and diploids are similar (wHAwDA), then

R0wHSwDS+wHA+wDA2. (11)

Thus, the basic reproductive number is approximately the sum of the geometric mean of the fitness components of haploids and diploids for sexual reproduction and the arithmetic mean of the fitness components of haploids and diploids for asexual reproduction. Hence, the contribution of sexual and asexual reproduction to the existence of a population can be estimated by calculating these geometric and arithmetic means of the fitness components.

Empirical studies have shown that some macroalgal populations are maintained by asexual reproduction (e.g., [5,1]). Interestingly, the model presented here suggests that, when the sexual reproduction term is smaller and can be ignored, the basic reproductive number can be approximated as

R0{wHAwhenwHA>wDAwDAwhenwHA<wDA. (12)

These results suggest that when asexual reproduction is dominant in a population, the ploidy with the larger fitness component mainly determines population persistence and total population size.

Ecology and evolution of haploid-diploid life cycles

The life cycle diversity observed in macroalgae has been of interest in terms of the evolution of haploid versus diploid [911, 13]. However, a simple population genetic model proposed the problem that life cycles in which both stages are stably maintained (biphasic life cycle) do not evolve, and the importance of ecological effects began to attract attention [57, 61, 62]. As an influential study, Hughes and Otto [61] found that ecological differences between two ploidy stages can lead to the evolution and maintenance of biphasic life cycles. In contrast, the evolution of variety in haploid-diploids (i.e., heteromphy versus isomorphy, and haploid-dominant versus diploid-dominant) is still obscure. Because the evolution in a haploid-diploid should be analyzed the mutant dynamics in a resident population that reached the equilibrium (e.g., [53]), the stable ploidy ratio in this article contributes to this analysis as the first step.

The haploid-diploidy in macroalgae has raised another question for researchers: how is the ploidy ratio in the field determined? The relative importance of the difference in life history parameters (e.g., fertility, survivorship, and fertilization success) between haploids and diploids was analyzed by simple [28, 30] or complex [31, 38] mathematical models. However, our study reveals that essentially life history parameters can be summarized in only three components; sexual reproduction of haploids (wHS), sexual reproduction of diploids (wDS), the difference in the asexual demographic force (wHAwDA). Of course, the measurement of individual life history parameters remains important, but in the future, when classifying and understanding the diversity of ploidy ratios observed in the field, the question of how the three components are balanced is more essential than the question of which life history traits are important. Furthermore, if the difference in asexual demographic forces is negligible, the balance between the geometric mean of sexual demographic forces (wHSwDS) and the arithmetic mean of asexual demographic forces ((wHA+wDA)/2) will also be an important property in applications, in the sense that population stability and biomass can be evaluated by the sum these two means.

Future perspectives

This article presents an analysis of the ploidy ratio and stability of macroalgal populations observed in the field. However, several issues remain to be addressed. First, it is assumed in this paper that density dependence is regulated by the population biomass. However, asymmetry between gametophytes and sporophytes may also affect the mode of competition. In other words, the question is whether the introduction of ploidy-specific competition coefficients (e.g., [61]) would change the conclusion. Similarly, since this model assumes that the parameters that determine the strength of the density dependence (δ) are equivalent between haploids and diploids, the difference of δ between ploidy phases is also an interesting problem. Because R0 is a measure of spread when rare determining (stability of the trivial equilibrium), it is not affected by the nature of density dependence. However, it remains unclear how the stability of a nontrivial equilibrium is affected by the competition coefficient and the strength of the density dependence; thus, it is important to extend the model to investigate these points.

Second, although it is assumed that all life-history parameters are constant, wild populations often exhibit seasonal oscillations. This issue is also related to the stability of population dynamics in the first point. It is an important task to determine whether oscillations are an intrinsic property of the population dynamics or whether they are due to parameter changes caused by seasonality and to investigate the effects of parameter changes on population dynamics.

The demography and the ploidy structure of a population are fundamental to understanding the evolution of diverse and complex life cycles. The analyses and formulas developed here provide a basis for analyzing ecological data to discuss demography and evolution in haploid-diploid species.

Supporting information

S1 File. The Mathematica code (Wolfram Mathematica, ver. 10. 1. 0. 0) used for the proof is available for download as the Supplementary file.

(ZIP)

pone.0295409.s001.zip (2.6MB, zip)
S1 Appendix

(DOCX)

pone.0295409.s002.docx (30.1KB, docx)

Acknowledgments

I thank Sarah Otto for helpful comments for the draft. I thank two anonymous reviewers.

Data Availability

All relevant data are within the paper and its Supporting Information files.

Funding Statement

This research was supported by Grants-in-Aid from the Japan Society for the Promotion of Science to KB (19K16225; 22K06407).The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Satheesh Sathianeson

7 Aug 2023

PONE-D-23-12970Stable demographic ratios of haploid gametophyte to diploid sporophyte abundance in macroalgal populationsPLOS ONE

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Reviewer #1: The author attempt to reconcile a long standing question about the maintenance of life cycles with more than one free-living stage using mathematical modeling. The stability of haploid and diploid stages in a population is the result of both sexual and asexual reproduction by each stage.

Specific Comments

L36: Not all algae can be considered plants. Thus, I would suggest to amend this first paragraph to focus on where haploid and diploid life cycles in such an alternation are found. In fact, they are found beyond 'plant' lineages in the Archaeplastids.

L39: Heteromorphic generations need not be marco vs. microscopic. Again, this paragraph is an over simplification of diversity.

L42: It is not a heteromorphic life cycle, but a heteromorphic alternation or heteromorphic generations.

L43: Similarly, it is not an isomorphic life cycle.

L44: strange list of citations and unclear what you mean by tend to consist of haploid and diploid?

L52-53: What does this mean?

L60: Were there differences in Chondrus in biomechanical strength?

L63: Krueger-Hadfield and Ryan (2020) JPhycol showed differences in survivorship.

L69: Please see Stoeckel et al. 2021 J Hered for asexual reproduction. This paper is not referenced in the current manuscript but deals with sexual and asexual reproduction.

L244: Switching between "i" and "we"

L261: Dependence?

L276-277: No references? This claim needs support.

Overall there is very little integration of the results or synthesis with the literature in the discussion. This is a major weakness that needs to be addressed. Moreover, there is a lack of integration across the literature with what is known in algae with regard to life cycle and reproductive system from empirical data.

Reviewer #2: I really enjoyed reading this submission. It is the kind of work that I personally like the most, both to do and to read. I am thankful to the author for giving me the pleasure of reading it.

The work is mathematically sound. Yet, for this work to be scientifically sound, it takes more than the mathematics. I have a few major criticisms that must be addressed:

The author must be clearer and more objective in his words, particularly concerning how the mathematics relate to (or model the) biology and ecology of these algae. Very important, there is a specific terminology (or nomenclature) that the author is neglecting (or misusing) and must be used (or corrected).

The work is poorly contextualized relative to these life-cycles and the most relevant theories and advances regarding their ecology and evolutionary stability.

This poor framing occurs when presenting the topic and the motive for doing this analysis, as well as when discussing the results and highlighting the key findings.

One criterion that is often used by other journals and publishers is the interest to the readers. I know from personal experience that, for the average audience in the field of algal ecology and evolution, deeply mathematical articles are not much appealing. This article is deeply mathematical and there is no way around it, nor do I wish so. Hence, for this article to be well taken by the respective scientific community, it must be very clarifying and convincing regarding the “so what?” factor. I suggest for the author to frame better this work regarding the several hypotheses advanced for the evolutionary stability of these life-cycles and unbalanced G:T ratios, and how this work advances the state-of-the art by supporting (or not) specific hypothesis.

Below, I expand on these issues and present other minor issues. Although the list is large, all of them are rather easy to solve. Once they have been adequately addressed, I can only recommend the publication of this good work.

This work must have a figure and corresponding text detailing the isomorphic biphasic life-cycle. In fact, that was the standard in most of the literature here cited. This can be either part of the introduction or a special section after the introduction and prior to the model presentation. This presentation of the life-cycle must use the correct nomenclature, including keywords as gametophytes, tetrasporophytes, carposporophytes, meiosis, mitosis, syngamy, oogonia, spermatangia, gametangia, zygote, cystocarps, tetraspores, carpospores, etc.

This description must show that the life-cycle is actually triphasic (gametophytes, carposporophytes and tetrasporophytes) and clarify how it reduces to biphasic upon the assumption of male gametophytes fertilizing all female gametangia. It should also include the alternative haploid and diploid monophasic cycles set by sporogenesis (as in Hughes and Otto, 1999) that are fundamental in the present submission. Make a clear contrast between sporogenesis and gametogenesis.

Here and elsewhere along the manuscript, the author must clarify that his “asexual reproduction” is only sporogenesis, and that he is disregarding vegetative growth (in red algae, the growth of new fronds from the same holdfast or from broken fragments).

Here and elsewhere along the manuscript, the author must be aware of the difference between fertility and fecundity. Broadly speaking, fecundity is the production of newborns. But these must survive to be recruited into the population. In this case, this comprehends spore survival while suspended in the water column, settling in suited substrate, germination and survival as germlings until juvenile thalli. Fertility is the final outcome of fecundity and spore survival.

The author should use this presentation of the life-cycle to expand on the main questions and theories about its ecology and evolution, and to frame his work relative to these questions and theories.

The article by Hughes and Otto (1999) is a very good guide to follow.

I tend to like focused, succinct text. However, this introduction is too short. It provides a vague, incomplete presentation of the topic. Sometimes it takes steps too large while overlooking issue that are important to better understand the presentation.

The author must also be clearer about haploids and diploids being phenotypically similar. Such statement (in several parts of the text) is vague. Is the author referring only to the thalli or also the spores and germlings? Regarding morphology, eco-physiology and bio-mechanics, which affect survival and growth, or also regarding fecundity and spore survival?

I dislike the idea of ecologically similar corresponding to phenotypically similar because, in my perspective, phenotype also comprehends the reproductive biology, which can never be similar among gametophytes and tetrasporophytes. Although it is perfectly understandable what the author is trying to say, I would never use such wording and I do not recall having ever red it elsewhere.

The author never presents the case that the dominance patterns (differences in abundances) follow a spatial or seasonal pattern, and that this indicates ecological and niche differentiation between haploids and diploids.

Lines 36-37: Algae are not plants.

Lines 41-44: This is a poor explanation of the specificities of heteromorphic and isomorphic biphasic life-cycles. I would merge with the previous sentences. I would first write all need be said about the heteromorphic case and only afterwards pass to the isomorphic case. In my opinion, the “going back and forth” along lines 38 to 44 is not ideal.

The sentence “In contrast, populations of species with an isomorphic life cycle tend to consist of both haploid and diploid individuals” is particularly unfortunate because both heteromorphic and isomorphic biphasic life-cycles consist of both haploid and diploid free-living individuals. The stressor here is that, in isomorphic biphasic life-cycles, haploids and diploids are apparently morphologically similar, and thus expected to also be ecologically similar and occupy the same niche. However, experimental studies have proved that gametophytes and tetrasporophytes are not exactly morphologically similar, much less eco-physiologically or bio-mechanically.

Line 46: “… field studies on [not of] the ratio of haploid-to-diploid abundances [plural] have shown both the occurrence of haploid-dominated (refs) and diploid-dominated (refs) populations”. It would also be nice to present how this ratio has been named (H:D or G:T).

Line 49-50 “haploid versus diploid dominance [not abundance] patterns”. The issue is the dominance.

Line 55: “haploids and diploids have identical phenotypes” is misleading. It was gametophytes and tetrasporophytes (i.e., the adult thalli) but not the tetraspores and carpospores (i.e., the spores, which are also either haploid or diploid). And they were compared under the assumption of identical survival and growth rates. I believe that phenotype also comprehends the reproductive biology of the respective individuals. The reproductive biology of gametophytes and sporophytes is inevitably widely different without prejudice of morphological similarity and niche overlap.

The abundance ratio (actually proposed by Destombe et al 1989 and Scrosati et al 1999, before Thornber and Gaines 2004) is a theoretical hypothesis grounded on the ecological similarity between gametophytes and tetrasporophytes and the differences between their reproductive biologies. This is not the same as the assumption that they are phenotypically similar. In fact, they cannot be phenotypically similar given that they have different reproductive structures and biologies.

This goes on throughout the text (line 57 and henceforth). My comment applies to all these instances.

Lines 59-64: All 6 lines within the same brackets is not a good way to write. Brackets should be for small intermissions. The text should be reformulated to be generally outside brackets. Krueger-Hadfield and Ryan (2020) also found differences in survival rates. Vieira et al. (2021) also found differences in growth rates. Usandizaga et al. (2023) also found differences in resistance to epiphyte infection. Thornber et al. (2006) and Verges et al. (2008) also found differences in resistance to herbivory. Many other examples exist.

Lines 65-71: “To address the shortcomings in theoretical treatments of the demography of macroalgal populations” is very vague. The author did not even debate properly the theoretical hypothesis about - and modelling of - the ecology and evolution of isomorphic biphasic life cycles, much less their shortcomings.

Lines 69-70: This is not quite true. Vieira and Santos (2010) addressed the effect of vegetative growth of new fronds from the same holdfast (it is included in what they call the looping rates). Here, and throughout the manuscript, the author only refers to sporogenesis. However, asexual reproduction also comprehends vegetative growth, fragmentation, budding, binary fission, etc.

Lines 71-72: This is Discussion and not Introduction.

Line 77: I would not brand the matrix model by Thornber and Gaines (2004) as “the classical”. Other authors have also developed matrix models of isomorphic biphasic life-cycles (ex: Engel et al, 2001; Vieira and Santos, 2010, 2012a, 2012b; Vieira and Mateus, 2014) which are not less relevant. It should be enough rephrasing to “updating the matrix model by Thornber and Gaines (2004)”.

Lines 75-93: The model presentation is mathematically correct … provided that the incorrect use of nomenclature is corrected.

“haploid and diploid reproductive cells” are actually the haploid and diploid spores, namely the tetraspores and carpospores.

“in flowing water” is while suspended in the water column.

“the survivorship of haploid and diploid reproductive cells in flowing water is ...,” is actually the survival of tetraspores and carpospores while suspended in the water column.

“the fertility of the haploid and diploid stages per individual is ...” is actually the fecundity.

Fertility is bgamma.

Adult survival is 1-m.

“Fractions aH and aD of the reproductive outputs of the haploid and diploid stages are asexual, skipping the sexual loop and developing directly into haploids and diploids.” Aside the poor English, this is sporogenesis.

Line 78: This is a poor way to start presenting the basics of the model. I propose.

“the haploid (H) and diploid (D) densities are forecasted to time t+1 from their realized densities at time t and their vital rates (equation (1)”

The Discussion does an interesting presentation of the importance of sexual and asexual reproduction, and of the new metric developed, the Reproductive number. However, it does a poor job framing these new findings in the context of the theories and questions about the ecology and evolution of this life-cycle. In fact, there are only as little as 3 citations in the Discussion, one of them being a self-citation. Several interesting questions and works are overlooked:

- the relative importance of fertility, growth and survival rates, and of differences between haploids and diploids in these vital rates (see works by Hughes and Otto, Fierst, Thornber and Gaines, Vieira, among others).

- the conditions for fixation in biphasic vs monophasic life-cycles (see works by Hughes and Otto, 1999; Hal, 2000; Bessho and Otto, 2022, among others).

- The cost of sex (see Richerd et al, 1993)

- The cost of DNA (see Lewis, 1985; Mable 2001)

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Decision Letter 1

Satheesh Sathianeson

9 Nov 2023

PONE-D-23-12970R1Stable demographic ratios of haploid gametophyte to diploid sporophyte abundance in macroalgal populationsPLOS ONE

Dear Dr. Bessho,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Academic Editor

PLOS ONE

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Comments to the Author

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Reviewer #1: (No Response)

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: Yes

Reviewer #2: Yes

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6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Overall this manuscript is substantially improved and all my original comments have been addressed. However, a minor detail is to carefully go through the manuscript and choose to either use "we" or "I" as the manuscript goes back and forth between the two.

Reviewer #2: The author addressed all my comments and suggestions in a very satisfactory way. In some places, the integration of his results and analytical solutions with former literature was very well achieved (see lines 262-270 for a good example). The outcome is good and I recommend its publication. There are, nevertheless, some issues still to be addressed/corrected, from conceptualization to grammar. I detail below.

This work focuses on the effects of ploidy differences in fitness (W). The analytical solutions derived and the figures presented have W as basis. However, for W contribute sexual and asexual reproduction, but also survival (here, mortality m) (see W derivations in the text), but its effects were overlooked. Aside, growth rates were entirely neglected, and these can also be important.

Previous works showed that ploidy differences in growth and survival rates can be of utmost importance. However, here, ploidy differences in m were overlooked and the work reads as if it all depended exclusively from ploidy differences in sexual and asexual reproduction (as example, see Discusion\\ lines 362-366). This is false. The author would arrive at the same results if the ploidy differences in W were driven by ploidy differences in m. However, throughout the work the author always considers that mH and mD are equal.

Grounding my claims, a few lines below the author states “this study explicitly considers density dependence, which many previous studies have omitted for simplicity. Many previous studies (e.g., Vieira and Santos 2010; 2012) define the ploidy ratio by the right eigenvector in the matrix model, where the density dependence is ignored and the population size diverges to infinity. In reality, the population size should remain finite and the stable ploidy ratio of this population is important.”

Therefore, in the author’s own words, the factors constraining population growth and causing density-dependence are fundamental. Hence, ploidy differences in these factors are also fundamental for the ploidy ratio as well as the evolutionary stability of isomorphic biphasic life cycles. Well, the factors behind density-dependency are growth and survival, which the author presently overlooked. Even in Appendix D, if I understood well, the different modes of density-dependency are never tested considering the possibility of ploidy differences in survival/mortality.

I take this chance to clarify that the effects of density-dependency (both Allee effects (detrimental low densities) and self-thinning (detrimental high densities)), and its ploidy differences, where evaluated by Vieira et al (2022) applying an Individual Based Model to Gracilaria chilensis (aka Agarophyton chilense).

Another proof, and simultaneously a consequence, of overlooking survival are the sentences in lines 282-285: “The ploidy ratio and biomass both depend on haploid fitness () and diploid fitness (). Because haploids reproduce diploid individuals and vice versa, haploids are dominant in a population with higher diploid fitness.”

This is misleading, with two aspects contribute to it:

1) This is only true in species where their demography (and their fitness) is dominated by fertility rates, or eventually by growth rates with fecundity being proportional to frond size. However, the exact opposite happens in species for which their demography (and fitness) is dominated by survival and/or clonal growth. The current biased analysis and conclusion resulted from the author not having tested for the effects of different degrees of m and of ploidy differences in m. Fierst et al. (2005) demonstrated that the patterns of ploidy dominance are highly dependent on the amount of m. Vieira and Santos (2010), as well as proceeding works by Vieira, corroborated it and advanced by showing that for species that mainly invest in survival (i.e., low m), ploidy differences in survival (in m) or clonal growth are the dominant factor determining patterns of ploidy dominance.

2) The traditional concept of fitness is the ability of producing offspring (i.e., next generation). This is straight-forward in mono-phasic life cycles. However, in biphasic life cycles, the offspring (i.e., the next generation) is of the opposite ploidy. Hence, the fitness components comprehend the vital rates necessary to get to the opposite ploidy phase, and not to complete the full life cycle. Once this is clarified, the fitness components of the sexual loop, as presented in the text, become clear. And lines 282-285 make more sense. But if this is not clarified ahead, the reader may become confused with the W of the sexual loop and lines 282-285.

I see 2 alternatives:

1) The author clarifies that here he focuses in the reproductive aspects and in due time the author will produce further work addressing the effects of growth and survival rates. I understand that addressing them all in just one article is unfeasible. Hence, this should be the first article in a series dedicated to this study. I myself have done the same for the same reasons.

2) In the proper places throughout the text, the author clarifies that m is also a fundamental component of W. Simultaneously, the author corrects the sentences that misleadingly suggest that W is only (or primarily) determined by reproduction.

The later goes in accordance with the author argumentation in the discussion “Of course, the measurement of individual life history parameters remains important, but in the future, when classifying and understanding the diversity of ploidy ratios observed in the field, the question of how the three components are balanced is more essential than the question of which life history traits are important”. I can accept this. Just make clear throughout the text that survival/mortality is also a fundamental aspect of the fitness components (w).

other issues:

Sometimes the text is too wordy and redundant.

Lines 37-43:

“The life cycle of sexual eukaryotes is characterized by the alternation of two nuclear phases: haploid and diploid. This alternation of nuclear phases results in an alternation of generations between two ploidy stages (haploid and diploid stages) and a biphasic life cycle is observed in many plants, algae, and fungi (Raper and Flexer 1970; Willson 1981; Valero et al. 1992; Klinger 1993; Bell 1997; Mable and Otto 1998; Coelho et al. 2007). In particular, in many macroalgae, the free-living haploid gametophytes and free-living diploid sporophytes alternate (details are described in the next section).”

This first paragraph of the introduction is vague explaining the main concept but still too wordy in some sentences. The concept of biphasic life-cycle is only presented in the last sentence. However, it is debated since the first sentence. These can lead the less-experienced reader to confusion. I give an example of how it may be improved:

Sexual reproduction in eukaryotes leads to the alternation of two nuclear phases, namely the haploid (n) and diploid (2n). In many plants, algae, and fungi both ploidy stages develop into adult free-living organisms and as such, a biphasic life cycle is observed (Raper and Flexer 1970; Willson 1981; Valero et al. 1992; Klinger 1993; Bell 1997; Mable and Otto 1998; Coelho et al. 2007). Many macroalgae alternate between a free-living haploid generation (the gametophytes) and the free-living diploid generation (the sporophytes).

Line 44-45: It is redundant to say “… this alternation of generations (biphasic life cycle) …”. It was already well explained above.

Line 48-50: This sentence is confusing. Does the author intend to say that there may be species with heteromorphic biphasic life-cycles, yet with minor phenotypic differences?

Maybe the author means:

“Species with the heteromorphic life cycle show large phenotypic differences (e.g., macroscopic versus microscopic, erect versus crustose). These species also often show different seasonal appearances and habitats (Higa et al. 2007).”

Line 51: “with” instead of “exhibiting the”.

Line 55: “interesting” and not “interested”

Line 55-57: This sentence is confusing because it does not clarify that it is haploid and diploid life cycles that are being mentioned, and not haploid and diploid individuals or generations, as mentioned earlier. Also, I do not see how this sentence leads to its following sentence. The text in lines 57-61 need a better introduction to it. Overall, this paragraph needs a better introductory explanation.

Lines 69-71: “… have shown that both …”.

Also, it should be clarified that patterns of haploid or diploid dominance have been observed over different taxa, different populations of the same species, and even over the same population depending on the special location or season.

Line 94: “analyses”

Line 95-97: “… and aims to express stable ploidy ratios in a haploid-diploid population using a mathematical expression as simple as possible.”

Lines 101-104: The author should explicitly mention that hereafter “asexual reproduction” means sporogenesis. As it is, it suggests that sporogenesis is the only form of asexual reproduction, which is incorrect.

Line 105: “… analyse the right eigenvector …” is jargon too specific. Maybe “… analyse the population structure yield by a matrix model …” is more accessible to the common reader.

Line 107: Please, do not start a paragraph with “Furthermore …”

Line 133: “the brown algae Fucales, …”. Otherwise, with the “brown algae, Fucales, …” reads as if all brown algae are Fucales and have a diploid life cycle.

Lines 137-139: “Since this article focuses on the dynamics of both gametophytes and sporophytes, I assume that the alternation of generation between haploid gametophyte and diploid sporophyte always occurs.”

Besides unnecessary, this sentence is misleading and untruthful. Throughout the article, and as soon as in the Abstract, the author claims:

“Furthermore, the persistence of a haploid-diploid population and its total biomass are shown to be determined by the basic reproductive number (0), which is shown to be a function of these four demographic forces. When R0 is greater than one, the haploid- diploid population stably persists, and the ploidy ratio obtained by the analytical solution is realized”

This implies that the haploid-diploid population may not persist, with one of the phases being eliminated, namely when R0<1. This contradicts the claim above that “… I assume that the alternation of generation between haploid gametophyte and diploid sporophyte always occurs.”. No, you don’t. And you even determine the conditions for one of them to be eliminated. The conditions for such evolutionary non-stability of isomorphic biphasic life cycles have been studied before.

Lines 152-157: “I note that, however, even when there are substantial differences between gametophytes and sporophytes, they may not be extreme. For example, the species of brown algae, Ectocarpus, both gametophytes and sporophytes are small and filamentous, but there is a substantial morphological difference between them. This species is classified as “heteromorphic (near-isomorphic)” (Couceiro et al. 2015).”

I do not see the point of these text.

#1 – first sentence only says that “substantial” differs from “extreme”. Dictionaries already do that.

#2 – second sentence only says that heteromorphicity may encompass other features besides size and filamentous. That happens with other species, even of red algae, as is Asparogopsis armata and Falkenbergia rufolanosa, which are actually the haploid and diploid phases of the same life cycle.

Better English: “In the brown algae Ectocarpus, both …”

Lines 157-160: poor English. Change to “The accumulation of empirical studies showing that gametophyte and sporophyte (or tetrasporphyte of red algae) phenotypes differ (morphologically, ecophysiologically, or biomechanically) calls into question the classical classification of the life cycle into heteromorphic and isomorphic categories.”

Lines 165-16: poor English. Change to “Among red algae, however, many species from the Florideophyceae are known to exhibit more complex life cycles. Here, the female gametes fertilized on the haploid female gametophyte develop into diploid multicellular structures, the carposporophytes …”. Furthermore, this is a vague description. More detail would be preferable.

Line 168: First, the carposporophyte produces diploid carpospores by somatic cell division. Only later they are released.

Line 171-172: “three phases” and not “three alternating generations” as the carposporophyte is not free-living and thus not a generation. By calling the carposporophyte a generation, the author is contradicting himself in his former presentation of the subject (see above). “Triphasic” means 3 phases, not 3 generations.

Line 174-175: Just to make sure, I went again through the article by Kamiya and Kawai (2002), specifically dedicated to the carposporophytes. Nowhere do they call it an “independent phase”, much less “generation”. We agree that this article is the reference about carposporophytes. So, lets agree that the carposporophyte is not an “independent phase”, much less a “generation”.

Lines 203-212: The explanation of the rationale for bH/2 is vague and could be improved. The bH is the fecundity rate of haploid females (i.e., production of carposporophytes). However, not all haploids are females as some are males. Assuming a 1:1 sex ratio, ½ of the haploids are females. Hence, in the matrix model, haploid fecundity is bH/2. Then, comes the reproductive cost f, leading to fbH/2. In my opinion, this explanation is clearer than the current text.

Line 336: I believe there is o typo as W_H^S is repeated twice and there is no W_D^S.

Lines 378-383: citing those studies might be adequate.

Line 382: “… an increase in its …”

Line 388: Is this true for the work by Hughes and Otto (1999)?

Line 405: “when the sexual reproduction term is smaller and can be ignored”. This would be better placed in line 403, before the equation:

“Interestingly, the model presented here suggests that, when the sexual reproduction term is smaller and can be ignored, the basic reproductive number can be approximated as”

Line 418-419: This English is grammatically incorrect. There is number disagreement (singular and plural mixed) and it I am not sure what the author intends to say. The sentence must be revised. Maybe “… in haploid-diploid life-cycles …”?

Line 427: The Individual Based Model by Vieira et al. (2022) is the more recent and most complex of them.

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Reviewer #1: No

Reviewer #2: No

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Decision Letter 2

Satheesh Sathianeson

22 Nov 2023

Stable demographic ratios of haploid gametophyte to diploid sporophyte abundance in macroalgal populations

PONE-D-23-12970R2

Dear Dr. Bessho,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Satheesh Sathianeson, Ph.D

Academic Editor

PLOS ONE

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Reviewers' comments:

Acceptance letter

Satheesh Sathianeson

28 Nov 2023

PONE-D-23-12970R2

Stable demographic ratios of haploid gametophyte to diploid sporophyte abundance in macroalgal populations

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 File. The Mathematica code (Wolfram Mathematica, ver. 10. 1. 0. 0) used for the proof is available for download as the Supplementary file.

    (ZIP)

    pone.0295409.s001.zip (2.6MB, zip)
    S1 Appendix

    (DOCX)

    pone.0295409.s002.docx (30.1KB, docx)
    Attachment

    Submitted filename: Response_to_Reviewers.docx

    pone.0295409.s003.docx (45.8KB, docx)
    Attachment

    Submitted filename: Response_to_Referees.docx

    pone.0295409.s004.docx (42.2KB, docx)

    Data Availability Statement

    All relevant data are within the paper and its Supporting Information files.


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