The Case
A 10-year-old male presented with hypophosphataemic rickets requiring subsequent multi-level orthopaedic procedures, Fanconi renotubulopathy (hypophosphataemia, phosphaturia, glycosuria and aminoaciduria in the absence of renal tubular acidosis and hypouricaemia) and progressive chronic kidney disease with bland urinary sediment and albuminuria (24 mg/mmol). He experienced hypocalcaemia in the absence of hypercalciuria, though his other serum and urine electrolytes were unremarkable (Stable 1). In addition to a past history of a surgically repaired ventricular septal defect (VSD) at 5 years, he suffered growth delay refractory to growth hormone therapy. This was complicated by hyperglycaemia at 15 years, which improved upon cessation of growth hormone therapy (normal fasting glucose 5.1 mmol/L and HbA1c 5.2%) but intermittent hyperglycaemia persisted. His development was otherwise normal. Notably, he was not macrosomic at birth nor suffered neonatal hyperinsulinism.
He has two siblings, a brother and sister; his sister has ureteric reflux receiving ureteroplasty at 6 years, and his parents have no history of kidney disease. His mother had no phenotypic nor genetic findings consistent with Dent disease.
There were no abnormalities on kidney imaging, including absence of nephrocalcinosis. Liver biochemistry and imaging were unremarkable. Kidney biopsy showed normal glomeruli and vessels with only minor tubular epithelial cell changes. Electron microscopy showed mild morphological changes in mitochondria of the tubular epithelial cells (SFigs. 1, 2).
CLCN5/OCRL genetic analysis was unremarkable, and the patient was diagnosed initially with Dent disease-like proximal renal tubulopathy. At 22 years, the patient and his parents provided informed consent and underwent subsequent trio whole exome sequencing which identified the de novo heterozygous HNF4A p.R85W mutation (NM_175914.4: c.[187C > T];[ =] p.[(Arg63Trp)];[ =]). This result was confirmed in a clinically accredited laboratory and returned to the patient and family with further genetic counselling. Definitive multilevel orthopaedic lower limb surgeries were undertaken at 23 years (SFig. 3). The patient subsequently re-developed diabetes mellitus responsive to small doses of sulphonylurea at 24 years which was identified due to regular genomically-informed investigations.
Lessons for the clinical nephrologist
Heterozygous Hepatocyte Nuclear Factor 4A (HNF4A) mutations are known to cause hyperinsulinaemic hypoglycaemia and macrosomia in the neonatal period, in addition to the risk of MODY-1 [1–3]. Since 2012, the phenotypic spectrum associated with HNF4A mutations has been extended to include renal tubular dysfunction. Here we focus on the expanding kidney phenotype and complications of this heterozygous HNF4A p.R85W mutation (Fig. 1).
Fig. 1.
Reported renal and extra-renal phenotypes of the HNF4A p.R85W mutation. The major extra-renal phenotypes are located on the left highlighted in green, with the less common extra-renal phenotypes located on the right highlighted in blue. Phenotypic overlap within the clinical presentations of this HNF4A variant are discussed throughout this review. Created with BioRender.com. *Fanconi syndrome defined as hyperphosphaturia with hypophosphataemia, glycosuria with normal serum glucose, metabolic acidosis, low molecular weight proteinuria, aminoaciduria and hypouricaemia. The number of reported cases is located in brackets next to each phenotype
Fanconi renal tubulopathy syndrome (FRTS) is characterised by generalised proximal renal tubular dysfunction that results in the failure of glucose, low-molecular weight proteins, phosphate, bicarbonate and urate reabsorption [4, 5]. It is most commonly diagnosed during childhood, with common genetic causes being that of Dent disease (CLCN5) and Lowe syndrome (OCRL), however there has been an increase in the identification of novel genetic aetiologies [4]. Fanconi renal tubulopathy syndrome type 4 (Hepatocyte Nuclear Factor 4A) [FRTS4] expands the kidney phenotype to include hypercalciuria, relative hypocalcaemia, hypermagnesaemia, nephrocalcinosis and kidney impairment, and HNF4A-associated atypical FRTS (OMIM:FRTS4,#616,026). The HNF4A p.R85W mutation was first reported as a novel pathogenic variant in 2010 [2], presenting with hyperinsulinism that transitions to MODY-1 in the absence of kidney manifestations. The kidney phenotype associated with the HNF4A p.R85W mutation was first described in 2012 [6] in a case presentation of neonatal hyperinsulinism with features of Fanconi syndrome. This was further substantiated in a case series7 of six patients with features of Fanconi syndrome and nephrocalcinosis, later referred to as FRTS4. Since the aforementioned case series, there have been 17 cases in the literature reported with FRTS caused by this heterozygous HNF4A p.R85W mutation [5–9, S10−S17] (Table 1).
Table 1.
Clinical phenotypes of patients with the HNF4A p.R85W mutation.
Adapted from Liu et al. [5]
| Patient No. | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
|---|---|---|---|---|---|---|---|---|
| Family | I | II | II | II | III | IV | V | VI |
| HNF4A variant |
p.R76W de novo |
p.R76W demonstrated inheritance |
p.R76W demonstrated inheritance |
p.R76W demonstrated inheritance |
p.R76W | p.R76W | p.R76W |
p.R76W de novo |
| Age at presentation | NA | N | N | N | N | N | N | 6 m |
| Sex at birth | F | F | F | M | F | F | F | F |
| Macrosomia | – | + | + | + | – | + | – | – |
| Hypoglycaemia | + | + | + | + | + | + | + | + |
| Diabetes (onset age) | – | – | – | – | + 20y | + 12y | – | NA |
| Electrolyte abnormality |
Partial FS Hypophosphataemia, metabolic acidosis, glycosuria, amino aciduria |
FS | FS | FS | FS | FS | FS | FS |
| Fanconi Syndrome (onset age) | + 1y | + 25y | + 23y | + N | + 3y | + 4y | + 4y | + 6 m |
| Liver Involvement (onset age) | + 3 m | – | – | – | – | – | – | NA |
| Growth Delay | NA | + | + | + | + | + | + | NA |
| Rickets | + | + | NA | NA | NA | NA | NA | + |
| Nephrocalcinosis | NA | + | + | + | + | + | + | + |
| eGFR (ml/min) | NA | 47 | 39 | 42 | 23 | 60 | 62 | NA |
| References | Stanescu et al. [6] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Brichta [13] |
| Patient No. | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
|---|---|---|---|---|---|---|---|---|
| Family | I | II | II | II | III | IV | V | VI |
| HNF4A variant |
p.R76W de novo |
p.R76W demonstrated inheritance |
p.R76W demonstrated inheritance |
p.R76W demonstrated inheritance |
p.R76W | p.R76W | p.R76W |
p.R76W de novo |
| Age at presentation | NA | N | N | N | N | N | N | 6 m |
| Sex at birth | F | F | F | M | F | F | F | F |
| Macrosomia | – | + | + | + | – | + | – | – |
| Hypoglycaemia | + | + | + | + | + | + | + | + |
| Diabetes (onset age) | – | – | – | – | + 20y | + 12y | – | NA |
| Electrolyte abnormality |
Partial FS Hypophosphataemia, metabolic acidosis, glycosuria, amino aciduria |
FS | FS | FS | FS | FS | FS | FS |
| Fanconi Syndrome (onset age) | + 1y | + 25y | + 23y | + N | + 3y | + 4y | + 4y | + 6 m |
| Liver Involvement (onset age) | + 3 m | – | – | – | – | – | – | NA |
| Growth Delay | NA | + | + | + | + | + | + | NA |
| Rickets | + | + | NA | NA | NA | NA | NA | + |
| Nephrocalcinosis | NA | + | + | + | + | + | + | + |
| eGFR (ml/min) | NA | 47 | 39 | 42 | 23 | 60 | 62 | NA |
| References | Stanescu et al. [6] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Hamilton et al. [7] | Brichta [13] |
| Patient No. | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 |
|---|---|---|---|---|---|---|---|---|
| Family | VII | VIII | IX | X | XI | XII | XIII | XIII |
| HNF4A variant |
p.R76W de novo |
p.R76W de novo |
p.R76W de novo |
p.R63W de novo |
p.R63W |
p.R63W de novo |
p.R63W de novo |
p.R63W demonstrated inheritance |
| Age at presentation | 6 m | N | N | N | N | N | N | N |
| Sex at birth | M | M | M | M | M | M | F | M |
| Macrosomia | + | + | + | + | – | + | NA | – |
| Hypoglycaemia | – | + | + | + | + | + | + | + |
| Diabetes (onset age) | NA | – | – | – | – | – | – | – |
| Electrolyte abnormality | FS | FS | FS |
Partial FS Phosphaturia, aminoaciduria |
Partial FS Hypophosphataemia, phosphaturia |
Partial FS Hypophosphataemia, metabolic acidosis, glycosuria, phosphaturia, aminoaciduria |
FS | FS |
| Fanconi Syndrome (onset age) | + 6 m | + 4 m | + 8 m | + N | + N | + 18 m | + 3y | + N |
| Liver Involvement (onset age) | NA | – | + 7 m | + N | – | + 6 m | + N | – |
| Growth Delay | + | NA | + | NA | NA | + | + | NA |
| Rickets | + | + | – | NA | NA | + | + | – |
| Nephrocalcinosis | – | – | – | – | – | NA | + | NA |
| eGFR (ml/min) | NA | NA | NA | NA | NA | NA | 47 | NA |
| References | Brichta [13] | Numakura [14] | Numakura [14] | Improda [15] | Improda [15] | Clemente et al. [7] | Walsh [16] | Walsh [16] |
| Patient No. | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 |
|---|---|---|---|---|---|---|---|---|---|
| Family | XIV | XV | XV | XVI | XVI | XVII | XVIII | XIX | XX |
| HNF4A variant |
p.R63W de novo |
p.R63W |
p.R63W demonstrated inheritance |
p.R85W |
p.R85W demonstrated inheritance |
p.R85W de novo |
p.R63W de novo |
p.R63W |
p.R85W de novo |
| Age at presentation | 3 m | 3y | N | NA | 2 days | 3y | N | N | 10y |
| Sex at birth | F | F | NA | F | M | M | M | M | M |
| Macrosomia | NA | NA | NA | – | – | NA | – | – | – |
| Hypoglycaemia | + | + | + | + | + | NA | + | + | – |
| Diabetes (onset age) | – | + gestational | NA | + 13y | NA | – | – | – | Drug related 10-15yrs (Growth Hormone), re-emerged at 26yrs |
| Electrolyte abnormality | FS | FS | NA | Partial FS |
Partial FS Hypophosphataemia, glycosuria, phosphaturia, proteinuria |
Partial FS Glycosuria, aminoaciduria |
FS Nil specifics |
FS Nil specifics |
Partial FS Hypophosphataemia, glycosuria, aminoaciduria |
| Fanconi Syndrome (onset age) | + 5y | + 3y |
Confirmed Mutation |
+ | + N | + 3y | + | + | 10y |
| Liver Involvement (onset age) | + 3 m | – | NA | + | + N | NA | + | – | – |
| Growth Delay | + | NA | NA | + | + | + | + | + | + |
| Rickets | + | + | NA | + | – | + | NA | NA | + |
| Nephrocalcinosis | + | + | NA | + | – | + | NA | NA | - |
| eGFR (ml/min) | 56 | 21 | NA | NA | NA | 63 | NA | NA | 51 |
| Reference | Liu et al. [5] | Anyiam et al. [8] | Anyiam et al. [8] | Sheppard [10] | Sheppard [10] | Duan [11] | McGlacken-Byrne [12] | McGlacken-Byrne [12] | This case report |
NA not available, N Neonatal, m month, F female, M male, y year, + yes, – no, eGFR estimated glomerular filtration rate, FS Fanconi syndrome
Renal Fanconi syndrome as defined either by the journal, or electrolyte disturbance meeting criteria; hyperphosphaturia with hypophosphataemia, glycosuria with normal serum glucose, metabolic acidosis, low molecular weight proteinuria, aminoaciduria and hypouricaemia
Those without all features of FS or defined as FS are labelled partial FS with specific electrolyte disturbances listed
The pancreatic beta cell phenotype of HNF4A mutations is well documented [1–3], however, a kidney phenotype was not recognised until identification of a specific heterozygous missense mutation in the DNA-binding domain of HNF4A (p.R85W) [6, 7]. In humans and rodents, HNF4A mRNA undergoes extensive alternating splicingS18, which has resulted in some confusion in the literature with the same mutation being referred to as p.R63W [5, 9, S10, S12], p.R76W [6, 7, S11] or p.R85W [S19]. This is due to the mutation having different names depending on which spliced isoform is used as a reference [4], but all pertaining to the same genetic variant and clinical syndrome. The HNF4A spliced isoform that contains p.R85W is substantially expressed in the kidney tubules, as such, it has been proposed that p.R85W be the reference sequence for FRTS4 [4]. The HNF4A p.R85W mutation occurs within a DNA binding domain, mutations of which have been thought to involve modified DNA binding via altered transcriptional activity that is expressed in the liver, pancreas and kidney tubules [S20]. Further, this variant is reported to exhibit a dominant-negative effect as opposed to haploinsufficiency that has been observed with other HNF4A variants [S21]. FRTS only affects the proximal tubule, implying that the function of HNF4A is specific to the proximal tubule [S22]. Marable et al. [S23] hypothesised that the expression of HNF4A is critical in the maintenance of transporters within the kidney proximal tubules, as is supported by HNF4A knockout mouse models that demonstrate FRTS, kidney tubular dysgenesis and nephrocalcinosis [S23].
The clinical presentation and spectrum of FRTS4 caused by this heterozygous HNF4A pathogenic missense variant has been expanded [5–9], [S10−S12, S14−S17] following the initial publication in 2012 [6]. Neonatal patients can present with macrosomia and hyperinsulinism, and some develop diabetes in adolescence or early adulthood. Patients present with atypical FRTS with electrolyte disturbances, acidaemia, failure to thrive, hypophosphataemic rickets in childhood, osteomalacia in adulthood, hypercalciuria, nephrocalcinosis and kidney impairment. Other features include liver involvement with elevated transaminases, hepatomegaly, jaundice and liver cysts. Hearing loss has been reported in two cases, with one case reported to have multiple congenital anomalies such as penile chordee with hypospadias and iris and chorioretinal colobomas.
The phenotype of our patient harbouring the heterozygous HNF4A p.R85W mutation is generally similar to previously reported cases. Whilst initially experiencing hyperglycaemia related to growth hormone therapy which resolved on cessation of treatment at 15 years, sulphonylurea-sensitive diabetes consistent with MODY-1 re-emerged in early adulthood. His predominant features were those of atypical FRTS with electrolyte disturbances, hypophosphataemic rickets, low molecular weight proteinuria and progressive kidney impairment, though not hypercalciuria or nephrocalcinosis. Our patient also had a VSD repaired in early life; there has been one further case reported of a VSD in a patient affected by the HNF4A p.R85W mutation [S16]. Cardiac anomalies are common in the general population and so this may not be causal, but it has been reported that HNF4A is expressed somewhat in adult myocytes [S24]. Our case reconfirms the kidney phenotype of FRTS4 in addition to MODY-1 in young adulthood and to potential cardiac structural anomalies. It also highlights that de novo presentations should be considered in phenotypes usually associated with autosomal dominant inheritance but without apparent family history, and emphasizes the importance of a genetic diagnosis to ensure long-term surveillance and management of both kidney and extra-renal manifestations. Lastly, our case highlights how selective application of trio genomic sequencing can have diagnostic utility, especially after an initially negative singleton genomic test or gene panel in a clinical scenario of heightened suspicion of a monogenic diagnosis.
In summary, FRTS4 caused by the specific heterozygous HNF4A p.R85W mutation manifests as Fanconi syndrome with calcium and magnesium dysregulation, nephrocalcinosis. kidney impairment, and extra-renal phenotypes including rickets and MODY-1. FRTS4 is likely underdiagnosed though nephrologists play a significant role in the diagnosis and care of affected patients with complex kidney and extra-renal manifestations. This case highlights the importance of confirming a molecular diagnosis in affected patients, including those with a phenotype approximating Dent Disease without an identified causative genotype (Table 2).
Table 2.
Teaching points
| Atypical Fanconi Renal Tubulopathy Syndrome (FRTS4) can be due to the heterozygous HNF4A p. p.R85W mutation |
| FRST4 can have endocrine, skeletal, hepatic and other extra-renal phenotypes |
| FRST4 can phenocopy other forms of Fanconi renal tubulopathy syndrome such as Dent disease and Lowe syndrome |
| De novo presentations should be considered in phenotypes usually associated with autosomal dominant inheritance but without apparent family history |
Supplementary Information
Below is the link to the electronic supplementary material.
Acknowledgements
We thank the clinicians and patients who have been involved. We thank the Royal Brisbane and Women’s Hospital (RBWH) Kidney Health Service and Genetic Health Queensland for their ongoing support. This study was financed by the Australian National Health and Medical Research Council (NHMRC GNT1098654) and the RBWH Foundation. The research conducted at the Murdoch Children’s Research Institute was supported by the Victorian Government’s Operational Infrastructure Support Program. The study leverages the supports and infrastructures enabled by the KidGen Collaborative and Australian Genomics.
Funding
Open Access funding enabled and organized by CAUL and its Member Institutions. National Health and Medical Research Council (GNT1098654). Royal Brisbane and Women’s Hospital Foundation.
Declarations
Conflict of interest
None to disclose.
Ethics approval
Ethical approval was granted by the Human Research Ethics Committees of the Royal Brisbane and Women’s Hospital (HREC/14/QRBW/34), The University of Queensland (Approval 2014000453) and Children’s Health Queensland (HREC/15/QRCH/126).
Human and animals rights
This study included human participants and has been performed in accordance with the ethical standards of the Declaration of Helsinki and its later amendments.
Informed consent
Informed consent was obtained from all patients and participants who participated in this study.
Footnotes
Publisher's Note
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