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European Journal of Medical Research logoLink to European Journal of Medical Research
. 2024 Mar 20;29:189. doi: 10.1186/s40001-024-01793-9

Antibiotic exposure during pregnancy increases risk for childhood atopic diseases: a nationwide cohort study

Sheng-Kang Tai 1, Yi-Hsuan Lin 2,3,4, Ching-Heng Lin 5, Ming-Chih Lin 2,3,4,6,7,
PMCID: PMC10953187  PMID: 38504329

Abstract

Purpose

The prevalence of atopic diseases has increased in recent decades. A possible link between antibiotic use during pregnancy and childhood atopic disease has been proposed. The aim of this study is to explore the association of antibiotic exposure during pregnancy with childhood atopic diseases from a nationwide, population-based perspective.

Methods

This was a nationwide population-based cohort study. Taiwan’s National Health Insurance Research Database was the main source of data. The pairing of mothers and children was achieved by linking the NHIRD with the Taiwan Maternal and Child Health Database. This study enrolled the first-time pregnancies from 2004 to 2010. Infants of multiple delivery, preterm delivery, and death before 5 years old were excluded. All participants were followed up at least for 5 years. Antenatal antibiotics prescribed to mothers during the pregnancy period were reviewed. Children with more than two outpatient visits, or one admission, with a main diagnosis of asthma, allergic rhinitis, or atopic dermatitis were regarded as having an atopic disease.

Results

A total of 900,584 children were enrolled in this study. The adjusted hazard ratios of antibiotic exposure during pregnancy to childhood atopic diseases were 1.12 for atopic dermatitis, 1.06 for asthma, and 1.08 for allergic rhinitis, all of which reached statistical significance. The trimester effect was not significant. There was a trend showing the higher the number of times a child was prenatally exposed to antibiotics, the higher the hazard ratio was for childhood atopic diseases.

Conclusions

Prenatal antibiotic exposure might increase the risk of childhood atopic diseases in a dose-dependent manner.

Keywords: Allergic rhinitis, Antibiotics, Asthma, Atopic dermatitis, Prenatal exposure

Introduction

With advances in medicine, antibiotics are commonly prescribed around the world [1]. The special physiology of pregnant women makes them more susceptible to infection, such as urinary tract infection. Thus, antibiotics are often used during the pregnancy period. It is estimated that up to 40% of pregnant women receive antibiotics prior to delivery [2, 3]. The prevalence of atopic diseases, such as food allergy, atopic dermatitis, asthma, and allergic rhinitis, has also increased globally in recent decades as a result of industrialization [46]. These allergic diseases not only seriously affect the quality of patients’ lives, but also cause a huge personal and socioeconomic burden [7].

A possible link has been suggested between the increasing use of antibiotics during pregnancy and the occurrence of atopic illnesses. The composition of an infant’s gut microbiome contributes to her subsequent immunological development. Alteration of the microbiome could lead to subsequent allergy diseases and obesity later in life [810]. The maternal microbiome determines the initial composition of the infant’s microbiome. Some studies reported that maternal antibiotic exposure during pregnancy could change infants’ microbiome [11, 12]. A matched case–control study found prenatal antibiotic exposure was associated with an increased risk of asthma [13]. However, large-scale studies on prenatal antibiotic exposure and atopic diseases later in life are still lacking.

The aim of this study was to explore the association of antibiotic exposure during pregnancy with childhood atopic diseases from a nationwide, population-based perspective.

Materials and methods

Study design and data source

This was a nationwide, population-based cohort study. Taiwan’s National Health Insurance Research Database (NHIRD) was the main source of data. Taiwan’s National Health Insurance (NHI) system was launched in 1995. It is a single-payer program with mandatory enrollment. The current coverage rate is 99.99% of Taiwan’s population (approximately 23.5 million). In 2002 , the NHIRD was established for research purposes. It contains all claims data from the NHI [1416]. Since 2015, the Health and Welfare Data Center (HWDC) of Taiwan’s Ministry of Health and Welfare (MOHW) further integrated NHIRD with other health-related databases [17]. In this study, the pairing of mothers and children was achieved by linking the NHIRD with the Taiwan Maternal and Child Health Database (MCHD) of Taiwan’s Health Promotion Administration (HPA). The main data analyzed in this study were obtained from ambulatory care expenditures by visit (CD) files and inpatient expenditure by admission (DD) files from the NHIRD. Antibiotic exposure records were acquired from inpatient order (DO) files. For privacy protection and database reliability, Taiwan’s Ministry of Health and Welfare (MOHW) requires investigators to conduct on-site analysis. During the study period, diagnoses in the NHIRD were coded by the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM) format.

Study population

This nationwide cohort study only enrolled first-time pregnancies during the study period, from 2004 to 2010. We excluded infants of multiple delivery, preterm delivery, and death before 5 years old. Finally, a total of 906,942 infants were enrolled in the study cohort (Fig. 1). The cohort was followed up until the end of 2016. All children in this cohort were followed up for at least 5 years.

Fig. 1.

Fig. 1

Composition of the study cohort. Only the first child in each family was enrolled. Premature infants and children of early death were excluded from analysis

Exposure to antenatal antibiotics

Antenatal antibiotic exposure was defined as a mother who received a medication with an ATC code (J01A, J01B, J01C, J01D, J01E, J01F, J01G, J01M, J01R, and J01X) during pregnancy. The timing of prescription (first, second, and third trimesters) and cumulative numbers of prescriptions were also recorded. We restricted the subgroup analysis to the timing of the initial exposure.

Outcome measurement

During the study period, the International Statistical Classification of Diseases and Related Health Problems, Ninth Revision, Clinical Modification (ICD9-CM) was used for coding of each diagnosis. Children who visited the outpatient department more than twice or were admitted once with a primary diagnosis of asthma (ICD-9 code 493.9), allergic rhinitis (ICD-9 code 477.9), or atopic dermatitis (ICD-9 code 691.8), were regarded as having an atopic disease.

Covariates

Maternal age, mode of delivery, maternal comorbidities, maternal allergic diseases, pregnancy-related complications, and infants’ gender were collected as potential confounders.

Statistical analysis

The data were retrieved and analyzed using the SAS statistical package (version 9.4; SAS Institute, Cary, North Carolina, USA). Demographic data were described by the mean with standard deviation, or frequency and percentage. Continuous variables were compared using the independent t-test. The Pearson’s Chi-square test was applied for analyzing categorical data. Cumulative incidences of atopic diseases between groups were compared by the Kaplan–Meier method. Cox regression model was applied for calculating the hazard ratios of antibiotic prescription after adjusting for potential confounders. A p value less than 0.05 was considered statistically significant.

Results

The cumulative incidences of atopic diseases

Of the 900,584 enrolled children, 359,891 (40.0%) were exposed to prenatal antibiotics. A comparison of the demographic data of these two groups revealed that the antibiotic exposure group had a slightly younger age of pregnancy, more Cesarean sections, more maternal comorbidities, more maternal allergic diseases, more pregnancy complications, and more male babies (Table 1). At the end of the study, the cumulative incidences of atopic diseases of the antibiotic exposure group were: 29.5% for atopic dermatitis, 30.5% for asthma, and 56.4% for allergic rhinitis. In the non-antibiotics group, the cumulative incidences were: 26.4% for atopic dermatitis, 28.4% for asthma, and 52.8% for allergic rhinitis (Fig. 2). The adjusted hazard ratio of antibiotics exposure during pregnancy to childhood atopic diseases were 1.12 for atopic dermatitis, 1.06 for asthma, and 1.08 for allergic rhinitis. All of them reached statistical significance (Table 2). Univariate analysis and actual numbers in each category are listed in Table 3.

Table 1.

Characteristics of study subjects

Characteristic Non-antibiotics group (422,740) Antibiotics group (484,202) Total p
n (%) n (%)
Maternal age (years)  < 0.001
< 25 72,366 (17.1) 90,395 (18.7) 162,761
25–29 159,287 (37.7) 180,320 (37.2) 339,607
30–34 140,761 (33.3) 151,804 (31.4) 292,565
≥ 35 50,326 (11.9) 61,683 (12.7) 112,009
Mode of delivery  < 0.001
Vaginal delivery 313,169 (74.1) 291,785 (60.3) 604,954
Cesarean section 109,571 (25.9) 192,417 (39.7) 301,988
Maternal comorbidity
Diabetes mellitus 1822 (0.4) 3284 (0.7) 5,106  < 0.001
Hypertension 1752 (0.4) 3452 (0.7) 5,204  < 0.001
Hyperlipidemia 3365 (0.8) 6074 (1.3) 9,439  < 0.001
Maternal allergic disease
Asthma 8954 (2.1) 15,594 (3.2) 24,548  < 0.001
Allergic rhinitis 65,455 (15.5) 95,671 (19.8) 161,126  < 0.001
Atopic dermatitis 7223 (1.7) 11,070 (2.3) 18,293  < 0.001
Pregnancy-related complication
Anemia 15,979 (3.8) 24,690 (5.1) 40,669  < 0.001
Gestational diabetes mellitus 6217 (1.5) 7401 (1.5) 13,618 0.024
Gestational hypertension 1485 (0.4) 2389 (0.5) 3,874  < 0.001
Pre-eclampsia or eclampsia 2986 (0.7) 5390 (1.1) 8,376  < 0.001
Placenta previa or abruptio placentae 9664 (2.3) 15,581 (3.2) 25,245  < 0.001
Neonatal gender  < 0.001
Female 205,227 (48.5) 231,737 (47.9) 436,964
Male 217,513 (51.5) 252,465 (52.1) 469,978
Timing of antibiotics exposure
1st trimester 288,434 (59.6) 288,434
2nd trimester 30,173 (6.2) 30,173
3rd trimester 165,595 (34.2) 165,595
Cumulative number of antibiotics
1 time 279,783 (57.8) 279,783
2 times 108,969 (22.5) 108,969
≥ 3 times 95,450 (19.7) 95,450

Fig. 2.

Fig. 2

Cumulative incidences of atopic diseases with or without prenatal antibiotics: A atopic dermatitis; B asthma; C allergic rhinitis. Prenatal antibiotics exposure increases the cumulative risk in all three atopic diseases. CI confidence interval, HR hazard ratio

Table 2.

Adjusted hazard ratios of prenatal antibiotics for childhood atopic diseases by Cox regression models*

Variables Asthma Allergic rhinitis Atopic dermatitis
aHR 95%CI aHR 95%CI aHR 95%CI
Antibiotics 1.06 1.05 1.07 1.08 1.07 1.09 1.12 1.11 1.13
Maternal age
 < 25 1.00 1.00 1.00
 25–29 1.13 1.12 1.14 1.27 1.26 1.28 1.17 1.15 1.18
 30–34 1.10 1.09 1.11 1.32 1.31 1.33 1.22 1.20 1.23
 ≥ 35 0.97 0.96 0.99 1.21 1.20 1.23 1.10 1.09 1.12
Mode of delivery
 Cesarean section 1.05 1.04 1.05 1.02 1.02 1.03 1.05 1.04 1.06
Maternal comorbidity
 Diabetes mellitus 1.03 0.98 1.08 1.03 0.99 1.06 1.02 0.98 1.07
 Hypertension 1.02 0.98 1.07 0.93 0.90 0.96 0.99 0.94 1.04
 Hyperlipidemia 1.10 1.06 1.13 1.15 1.12 1.18 1.17 1.13 1.21
Maternal allergic disease
 Asthma 1.58 1.55 1.61 1.18 1.16 1.20 1.18 1.15 1.20
 Allergic rhinitis 1.31 1.30 1.32 1.53 1.52 1.54 1.29 1.28 1.31
 Atopic dermatitis 1.06 1.03 1.08 1.12 1.10 1.14 1.55 1.52 1.59
Pregnancy-related complication
 Anemia 1.02 0.97 1.07 0.98 0.94 1.01 0.96 0.91 1.01
 Gestational diabetes mellitus 0.99 0.97 1.02 1.10 1.08 1.12 1.15 1.12 1.18
 Gestational hypertension 1.06 0.95 1.18 0.97 0.90 1.06 1.02 0.91 1.14
 Pre-eclampsia or eclampsia 0.91 0.84 1.00 1.00 0.94 1.06 1.00 0.91 1.09
 Placenta previa and abruptio placentae 1.10 1.07 1.13 1.08 1.06 1.10 1.08 1.05 1.11
Male gender 1.33 1.32 1.34 1.29 1.29 1.30 1.04 1.03 1.05

aHR adjusted hazard ratio, CI confidence intervals

*Models adjusted for maternal age, mode of delivery, maternal comorbidity, maternal allergic disease, and pregnancy-related complications

Table 3.

Univariate analysis of factors associated with childhood atopic diseases

Variables Asthma Allergic rhinitis Atopic dermatitis
No Yes HR 95%CI No Yes HR 95%CI No Yes HR 95%CI
Antibiotics
No 387,072 153,621 1.00 255,452 285,241 1.00 397,702 142,991 1.00
Yes 250,257 109,634 1.09 1.08 1.10 156,819 203,072 1.10 1.10 1.11 253,788 106,103 1.14 1.13 1.15
Maternal age
 < 25 118,746 44,538 1.00 85,882 77,402 1.00 123,648 39,636 1.00
25–29 235,722 102,876 1.14 1.13 1.16 150,012 188,586 1.29 1.28 1.30 243,561 95,037 1.18 1.17 1.20
30–34 202,919 86,010 1.12 1.11 1.14 125,613 163,316 1.35 1.33 1.36 204,380 84,549 1.24 1.23 1.26
 ≥ 35 79,942 29,831 1.01 0.99 1.02 50,764 59,009 1.25 1.23 1.26 79,901 29,872 1.14 1.12 1.15
Mode of delivery
Vaginal delivery 427,765 172,911 1.00 278,617 322,059 1.00 437,872 162,804 1.00
Cesarean section 209,564 90,344 1.06 1.05 1.07 133,654 166,254 1.06 1.05 1.07 213,618 86,290 1.07 1.07 1.08
Maternal comorbidity
Diabetes mellitus 3934 1820 1.11 1.06 1.16 2401 3353 1.14 1.10 1.18 3978 1776 1.14 1.09 1.20
Hypertension 3976 1785 1.09 1.04 1.14 2606 3155 1.03 0.99 1.07 4055 1706 1.09 1.04 1.15
Hyperlipidemia 7842 3891 1.18 1.15 1.22 4408 7325 1.28 1.26 1.31 7770 3963 1.28 1.25 1.33
Maternal allergic disease
Asthma 14,592 11,887 1.80 1.77 1.83 9016 17,463 1.45 1.43 1.47 17,064 9415 1.37 1.35 1.40
Allergic rhinitis 112,758 62,428 1.38 1.37 1.39 58,829 116,357 1.58 1.57 1.59 116,308 58,878 1.35 1.34 1.37
Atopic dermatitis 13,737 6451 1.14 1.11 1.16 8099 12,089 1.22 1.19 1.24 11,928 8260 1.65 1.62 1.69
Pregnancy-related complication
Anemia 3556 1507 1.04 0.99 1.09 2375 2688 0.98 0.95 1.02 3691 1372 0.98 0.93 1.03
Gestational diabetes mellitus 13,180 5417 1.01 0.98 1.03 7752 10,845 1.15 1.13 1.17 12,744 5853 1.18 1.15 1.21
Gestational hypertension 731 327 1.09 0.98 1.22 487 571 1.02 0.94 1.11 750 308 1.08 0.96 1.20
Pre-eclampsia or eclampsia 1283 502 0.96 0.88 1.05 799 986 1.04 0.97 1.10 1269 516 1.06 0.98 1.16
Placenta previa and abruptio placentae 13,930 6615 1.13 1.10 1.16 8647 11,898 1.13 1.10 1.15 14,293 6252 1.12 1.09 1.15
Neonatal gender
Female 321,925 111,950 1.00 218,970 214,905 1.00 315,634 118,241 1.00
Male 315,404 151,305 1.33 1.32 1.34 193,301 273,408 1.29 1.28 1.30 335,856 130,853 1.04 1.03 1.05

CI confidence intervals, HR hazard ratio

Timing of prenatal antibiotic exposure and childhood atopic diseases

To investigate how the timing of antibiotic prescription affected the incidences of childhood atopic diseases, we further stratified the infants into three groups according to their first-time exposure to antibiotics during the pregnancy course. After adjusting for confounders, including maternal age, mode of delivery, preterm delivery, maternal comorbidity, maternal allergic disease, pregnancy-related complications, and neonatal gender, the hazard ratios for asthma, allergic rhinitis, and atopic dermatitis were 1.07, 1.09, and 1.13 for the first trimester, 1.06, 1.06, and 1.07 for the second trimester, and 1.02, 1.04, and 1.06 for the third trimester. Although all these hazard ratios reached statistical significance, the timing of exposure did not affect the magnitude of risk for childhood atopic diseases (Table 4).

Table 4.

Adjusted hazard ratios of prenatal antibiotics for childhood atopic diseases by Cox regression models*

Asthma Allergic rhinitis Atopic dermatitis
HR 95%CI HR 95%CI HR 95%CI
Stratified by timing of prescribing antibiotics
1st trimester 1.07 1.06 ~ 1.08 1.09 1.08 ~ 1.09 1.13 1.12 ~ 1.14
2nd trimester 1.06 1.03 ~ 1.08 1.06 1.05 ~ 1.08 1.07 1.04 ~ 1.09
3rd trimester 1.02 0.99 ~ 1.04 1.04 1.02 ~ 1.06 1.06 1.04 ~ 1.09
Stratified by cumulative times of antibiotics prescription
1 time 1.04 1.04 ~ 1.05 1.06 1.06 ~ 1.07 1.08 1.07 ~ 1.09
2 times 1.06 1.05 ~ 1.08 1.09 1.08 ~ 1.10 1.13 1.11 ~ 1.14
≥ 3 times 1.11 1.09 ~ 1.12 1.12 1.11 ~ 1.13 1.20 1.19 ~ 1.22

*Model adjusted for maternal age, mode of delivery, preterm delivery, maternal comorbidity, maternal allergic disease, pregnancy-related complication, neonatal gender; CI confidence interval

Cumulative number of times of prenatal antibiotic exposure and childhood atopic diseases

We further stratified the children according to their cumulative number of times of prenatal antibiotics exposure to test if a dose-dependent effect existed. After adjusting for confounders, including maternal age, mode of delivery, preterm delivery, maternal comorbidity, maternal allergic disease, pregnancy-related complication, and neonatal gender, the hazard ratios for asthma, allergic rhinitis, and atopic dermatitis were 1.04, 1.06, 1.08 for one exposure, 1.06, 1.09, 1.13 for two exposures, and 1.11, 1.12, 1.20 for exposure more than 3 times. A trend was revealed showing the higher the number of times an infant was prenatally exposed to antibiotics, the higher the hazard ratio was for childhood atopic diseases (Table 4).

Types of delivery and risk for childhood atopic diseases

We stratified the children according to their types of delivery. After adjusting for potential confounders, including maternal age, mode of delivery, preterm delivery, maternal comorbidity, maternal allergic disease, pregnancy-related complication, and neonatal gender, the hazard ratios for asthma, allergic rhinitis, and atopic dermatitis were 1.07, 1.08, 1.12 for vaginal delivery and 1.06, 1.08, 1.12 for Cesarean section (Table 5). The risk raised by antibiotics exposure was not modified by types of delivery.

Table 5.

Adjusted hazard ratios of prenatal antibiotics for childhood atopic diseases, stratified by types of delivery*

Variables Asthma Allergic rhinitis Atopic dermatitis
HR 95%CI HR 95%CI HR 95%CI
Types of delivery
Vaginal delivery 1.07 1.06 1.08 1.08 1.08 1.09 1.12 1.11 1.13
Cesarean section 1.06 1.04 1.07 1.08 1.07 1.09 1.12 1.11 1.14

*Model adjusted for maternal age, mode of delivery, preterm delivery, maternal comorbidity, maternal allergic disease, pregnancy-related complication, neonatal gender

Discussion

This nationwide, population-based cohort study reveals that prenatal antibiotic exposure increases the risk of childhood atopic disease. A dose-dependent effect was revealed by the positive correlation between the cumulative number of times antibiotics were prescribed and the risk of atopic diseases. The increased risk of atopy associated with antibiotic exposure was not affected by different trimesters. This study provides comprehensive evidence that the pathogenesis of childhood allergic diseases may begin in early pregnancy, according to population-based data.

Antibiotic exposure in mid-to-late pregnancy was consistently associated with childhood asthma in a Danish birth cohort study [18]. Trimester effects have also been reported in several smaller-scale studies [1921]. However, a meta-analysis revealed a positive association between prenatal antibiotic use in every trimester and the occurrence of childhood asthma [22]. In our study, trimester effects were assessed, but no significant differences in hazard ratios were found among the trimesters. This apparent inconsistency in findings might be explained by the different follow-up periods and different disease definitions used in the studies. Prenatal antibiotic exposure has also been reported to increase the risk of atopic dermatitis and hay fever [23, 24]. However, the trimester effects were not analyzed. Our study also reported that risk of allergic rhinitis was positively associated with prenatal antibiotic exposure. Respiratory tract infections were the most common indication for prenatal antibiotics use in our study (Appendix Table 6). Subgroup analysis by different kinds of antibiotics is added in Appendix Table 7. There are no significant differences between groups. Only quinolone shown borderline statistical significance in asthma. Vaginal delivery exposes the newborn to the maternal gut microbiota directly during birth, which may have a protect effect than in cases of cesarean section.

Table 6.

The top 20 indication for prenatal antibiotics

ICD9 Diagnosis n Percent Cumulative numbers Cumulative percent
465 Acute pharyngitis 46,281 12.86 46,281 12.86
463 Tonsilitis 24,645 6.85 70,926 19.71
461 Sinusitis 22,190 6.17 93,116 25.88
616 Inflammatory disease of cervix, vagina, and vulva 20,439 5.68 113,555 31.56
599 UTI 18,369 5.11 131,924 36.67
V22 Normal pregnancy 16,239 4.51 148,163 41.18
595 Cystitis 15,738 4.37 163,901 45.55
789 Abdominal pain 13,140 3.65 177,041 49.21
614 Inflammatory disease of ovary, fallopian tube, pelvic cellular tissue, and peritoneum 10,756 2.99 187,797 52.19
523 Gingival and periodontal diseases 8659 2.41 196,456 54.6
626 Disorders of menstruation and other abnormal bleeding from female 8168 2.27 204,624 56.87
466 Acute bronchitis and bronchiolitis 7897 2.19 212,521 59.07
640 Hemorrhage in early pregnancy 7663 2.13 220,184 61.2
706 Diseases of sebaceous glands 6862 1.91 227,046 63.1
462 Pharyngitis, acute 6282 1.75 233,328 64.85
644 Early or threatened labor 6033 1.68 239,361 66.53
487 Influenza 5406 1.5 244,767 68.03
646 Other complications of pregnancy, not elsewhere classified 4905 1.36 249,672 69.39
460 Acute nasopharyngitis (common cold) 4894 1.36 254,566 70.75
558 Other noninfectious gastroenteritis and colitis 4764 1.32 259,330 72.08

Table 7.

Subgroup analysis by different kinds of antibiotics

Variables Asthma Allergic rhinitis Atopic dermatitis
HR 95%CI HR 95%CI HR 95%CI
Type of antibiotics
J01A (tetracyclines) 1.09 1.06 1.12 1.13 1.11 1.15 1.19 1.16 1.22
J01B (amphenicols) 1.09 1.04 1.15 1.08 1.04 1.12 1.08 1.03 1.14
J01C (beta-lactam antibacterials, penicillins) 1.08 1.07 1.10 1.08 1.07 1.09 1.11 1.10 1.12
J01D (other beta-lactam antibiotics) 1.04 1.03 1.05 1.08 1.07 1.09 1.12 1.11 1.13
J01E (sulfonamides and trimethoprim) 1.08 1.04 1.12 1.13 1.10 1.16 1.10 1.05 1.14
J01F (macrolides, lincosamides and streptogramins) 1.06 1.05 1.08 1.09 1.08 1.11 1.13 1.11 1.15
J01G (aminoglucosides) 1.12 1.05 1.20 0.98 0.93 1.04 1.02 0.95 1.10
J01M (quinolone) 1.02 0.99 1.06 1.07 1.04 1.10 1.13 1.09 1.17
J01R (combination)
J01X (other antibacterials) 1.05 1.00 1.10 1.08 1.04 1.12 1.11 1.06 1.17

Model adjusted for maternal age, mode of delivery, preterm delivery, maternal comorbidity, maternal allergic disease, pregnancy-related complication, neonatal gender

More studies are needed to elucidate the mechanism underlying the positive association between use of prenatal antibiotics and childhood atopic diseases. The hygiene hypothesis may partially explain it [25]. According to the hygiene hypothesis the microbiota, i.e., the composition of the intestinal flora, which is established early in life, plays a crucial role in the development of the immune system in children [26]. The association between gut microbiota and allergic diseases has been reported in a number of studies [27, 28]. The microbial colonization of the fetus has been reported to occur as early as 11 weeks of gestation [29]. Thus, by inducing reductions and alterations in the fetal intestinal microbiota, exposure to antibiotics during pregnancy may affect immune system development, thereby increasing the likelihood of chronic disease [30, 31]. Animal studies have also shown that antibiotics could induce the transition from TH1/TH2 balance to TH2-dominant immunity. Nevertheless, oral administration of intestinal flora could prevent this process from developing [32, 33]. The risk of childhood asthma increases as the cumulative number of courses of prenatal antibiotics increases, according to a Canadian cohort study [34]. A dose-dependent effect has also been reported in a claims data analysis [31]. In our study, a similar trend was noted in all childhood allergic diseases. This further supports the notion that prenatal antibiotics may be causally linked with childhood atopic diseases, and that this relationship is not the result of the phenomenon of confounding by indication [35, 36].

The correlation between antibiotic exposure during pregnancy and childhood allergic diseases may be confounded by many factors. Maternal characteristics such as maternal age, maternal history of allergy, maternal smoking, delivery mode, and maternal education level have all been reported [23, 34, 35, 37, 38]. The strongest confounder may be maternal allergic disease, because atopy has a strong hereditary tendency. The strongest predictor of childhood atopic diseases is genetic inheritance from parents. If we include all siblings in this study. The analysis might be confounded by family clusters [39, 40] So, we included only the first child in each family. Preterm infants usually have more medical care need. So, we excluded them to prevent the confounding effect. If children did not survive more than 5 years, short follow-up time would confound the outcome analysis. As a result, we did not involve those infants of early death.

Our study had certain limitations. The data source was national health insurance claims data, which do not include laboratory data. The disease diagnosis was mainly decided by physicians’ coding. The validity of the diagnoses could not be confirmed because personal identification data are not permitted to be released from the data center. Thus, certain misclassifications may have existed. Because we used Cox regression model to analyze the cumulative hazard ratio between groups. However, Cox regression model (proportional hazard model) can only calculate the hazard ratio. Risk difference calculation can count the attributable risk proportion. It may be more valuable in public health policy making.

Abbreviations

HPA

Health Promotion Administration

HWDC

Health and Welfare Data Center

ICD-9-CM

International Classification of Diseases, Ninth Revision, Clinical Modification

MCHD

Maternal and Child Health Database

MOHW

Ministry of Health and Welfare

NHI

National Health Insurance

NHIRD

National Health Insurance Research Database

Appendix

See Tables 6 and 7.

Author contributions

All authors contributed to the study conception and design. Material preparation, data collection and analysis were performed by Yi-Hsuan Lin, Ching-Heng Lin and Ming-Chih Lin. The first draft of the manuscript was written by Sheng-Kang Tai. All authors read and approved the final manuscript.

Funding

This work was supported by the Taichung Veterans General Hospital Research Fund (Registration numbers TCVGH-1116503C, 1107309D, FCU1118025).

Availability of data and materials

In this study, the data analyzed are subject to the following licenses/restrictions: To protect patients’ identity and validate the reliability of the databases, investigators are required to perform onsite analysis at HWDC via remote connection to MOHW servers. Requests to access these datasets should be directed to Dr. Ching-Heng Lin, epid@vghtc.gov.tw.

Declarations

Ethics approval and consent to participate

This study protocol was approved by the institutional review board of Taichung Veterans General Hospital, which waived the need for informed consent (CE17178A-4). Patients or the public were not involved in the design, or conduct, or reporting, or dissemination plans of our research.

Competing interests

The authors have no relevant financial or non-financial interests to disclose.

Footnotes

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

In this study, the data analyzed are subject to the following licenses/restrictions: To protect patients’ identity and validate the reliability of the databases, investigators are required to perform onsite analysis at HWDC via remote connection to MOHW servers. Requests to access these datasets should be directed to Dr. Ching-Heng Lin, epid@vghtc.gov.tw.


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