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. 2024 Mar 25;14:7080. doi: 10.1038/s41598-024-54962-5

Valency based novel quantitative structure property relationship (QSPR) approach for predicting physical properties of polycyclic chemical compounds

Ali Raza 1,, Mishal Ismaeel 2, Fikadu Tesgera Tolasa 3,
PMCID: PMC10963771  PMID: 38528019

Abstract

In this study, we introduce a novel valency-based index, the neighborhood face index (NFI), designed to characterize the structural attributes of benzenoid hydrocarbons. To assess the practical applicability of NFI, we conducted a linear regression analysis utilizing numerous physiochemical properties associated with benzenoid hydrocarbons. Remarkably, the results revealed an extraordinary correlation exceeding 0.9991 between NFI and these properties, underscoring the robust predictive capability of the index. The NFI, identified as the best-performing descriptor, is subsequently investigated within certain infinite families of carbon nanotubes. This analysis demonstrates the index’s exceptional predictive accuracy, suggesting its potential as a versatile tool for characterizing and predicting properties across diverse molecular structures, particularly in the context of carbon nanotubes.

Keywords: Topological descriptor, Regression models, Neighborhood degree, Nanosheets

Subject terms: Drug delivery, Medicinal chemistry, Pharmaceutics, Drug discovery, Materials science, Mathematics and computing

Introduction

Exploring the correlation between the molecular structures and numerical attributes of biological, physical, and chemical properties across diverse compounds stands as a notable application of chemical graph theory. This has led to the introduction of qualitative structure–property relationships (QSPR) and qualitative structure-activity relationships (QSAR). Within QSPR/QSAR studies, topological indices (TIs) emerge as fundamental tools, serving as numeric graph invariants that establish connections between molecular structures and the bio-physical properties of chemical compounds15. Essentially, TIs function as transformations assigning positive real numbers to graphs. These numerical descriptors play a crucial role in investigating boiling points, melting points, bond energies, and intermolecular forces in existing compounds. Moreover, TIs contribute to predicting the physical properties of different chemical compounds under development, enabling the design of compounds with desired physio-chemical and biochemical characteristics. This streamlined approach reduces additional costs and time, addressing a significant challenge, particularly in developing countries. Extensive research has been conducted on TIs and their applications, as detailed in69.

Now we define some notations and preliminaries before proceeding further with the study of a specific index. In the literature, notations of vertices, edges, and faces of a planar graph are well defined. For the notions and notations not given here, we refer10 to the readers. Degree of a vertex ν is denoted by d(ν) while neighborhood degree is denoted by dn(ν). Consider a molecular graph G(VE) of a molecular compound, where E, set of edges, represents bond among the atoms and V is set of vertices represents the atoms. Face is a region bounded by some vertices v and sum of degree of these incident to particular face is known as degree of face i.e. d(£)=v£d(v). Similarly, neighborhood degree of face is calculated by adding neighborhood degrees of all incident vertex i.e. dn(£)=v£dn(v). Different structure descriptors (TIs) can be evaluated by using vertices, edges or both. The vertex connectivity index RCI(G) and edge connectivity index ECI(G) were introduced by Randic11 and Estrada12 respectively as:

RCI(G)=uνGdu×dν-12ECI(G)=efde×df-12.

Nikolic and Trinajstic13 compared these indices for benzenoid hydrocarbons and model equations to predict bond energies and boiling points of hydro-benzenoid with error range of 0.8–2%. To increase the efficiency of their regression equations, Jamil et al.14 introduced a new topological index, known as the Face Index .

Motivated by the above work, we introduced a new topological index namely Neighborhood Face Index , denoted by NFI, and defined as:

NFI(G)=£F(G)dn(£)=£F(G)dn(ν)whereν£.

which exhibit good correlation with numerous physical properties like bond energies and boiling points along-with stronger prediction ability for benzenoid hydrocarbons. Consider the two dimensional graph of perylene benzenoid graph as shown in Fig. 1 where vertices degree (black), neighbourhood degree (blue) and different internal faces (red) are mentioned. By adding the neighbourhood degree of the vertices which are adjacent to a particular face, we obtain dn(£1)=38,dn(£2)=50,dn(£3)=38,dn(£4)=38,dn(£5)=38 and the external face £ has face degree 102. Then by definition, NFI=dn(£)=304.

Figure 1.

Figure 1

Vertices degree of the perylene benzenoid graph.

Nanotechnology is catalyzing a revolution in the 21st century, impacting various fields such as space exploration, entertainment, and communication through the creation of innovative materials and devices. Carbon nanotubes, in particular, are on the verge of replacing traditional electronic materials, aiming to construct smaller, faster, and more efficient devices and microchips. The realm of nanotechnology has seen the introduction of diverse nanostructures, including nanocages, magnetic nanochains, nanosheets, nanofibers, and quantum heterostructures. These tubular nanostructures exhibit unique mechanical properties attributed to their stiff and elastic nature1517. Carbon nanotorus structures, known for their multi-layered and caged configurations, find widespread applications in electronics and magnetism1820. Additionally, the extensive use of nanosheets in home appliances and industry is briefly discussed in existing literature2125.

In the present study, we explore regression models involving the neighborhood face index (NFI) in conjunction with various structural parameters such as the randic index, edge connectivity index, π-electron energy, and boiling points of hydrobenzenoids. Precise formulas for graphene, C4C8(S), C4C8(R), and H-Naphthalenic Nanosheets are derived. The computational aspects of our work involve the use of Matlab for mathematical calculations and verifications, Maple for graphical analysis and plotting of results, and ChemSketch for drawing molecular graphs. Physio-chemical properties of benzenoid hydrocarbons are detailed in Table 1, providing exact values for neighborhood face index, randic index, edge connectivity index, π-electron energy, and boiling points of 21 common benzenoid hydrocarbons. Experimental values for π-electron energy and boiling points are extracted from previous literature26,27. Leveraging the data in Table 1, we establish regression models for the newly introduced neighborhood face index and discuss its chemical applicability.

Table 1.

Neighborhood face index, vertex connectivity index, edge connectivity index, π-energy and boiling points of benzenoid hydrocarbons.

Benzenoid hydrocarbons Neighborhood face index Randic index Connectivity edge index π electron energy Boiling points
Benzene 48 3.00 3.0000 8.0000 80.10
Naphthalene 114 4.97 5.4550 13.6830 218.2
Phenanthrene 182 6.96 7.9260 19.4480 338.1
Anthracene 180 6.93 7.9420 19.3140 340.3
Chrysene 250 8.93 10.2470 25.1920 431.4
Benzanthracene 248 8.92 10.4140 25.1010 424.9
Triphenylene 255 8.96 10.4140 25.2750 428.9
Tetracene 246 8.89 10.4300 25.1880 440.1
Benzo(a)pyrene 302 9.92 11.8970 28.2200 496.2
Benzo(e)pyrene 304 9.93 11.8970 28.3360 493.1
Perylene 304 9.93 11.8970 28.2450 497.4
Anthanthrene 354 10.89 13.3970 31.2530 547.3
Benzoperylene 356 10.92 13.3790 31.4250 542.2
Dibenzo(a,c)anth 318 10.92 12.9020 30.9250 535.1
Dibenzo(a,h)anth 316 10.89 12.8850 30.8810 535.0
Dibenzo(a,i)anth 316 10.89 13.2180 30.8800 531.0
Picene 318 10.92 12.6860 30.9430 519.0
Coronene 408 11.89 14.8630 34.5720 590.1
Dibenzo(a,h)pyr 370 11.57 14.3850 33.9280 596.2
Dibenzo(a,g)pyr 372 11.49 14.3850 33.9540 594.3
Pyrene 234 7.93 9.4080 22.5060 393.1

Linear regression model between NFI, RI and ECI

The relationship between neighborhood face index and vertex connectivity index (randic index) is given in Eq. (1), while values for correlation coefficient R, adjusted squared correlation coefficient R2, standard error of estimation SEE, Fisher ratio F and number of benzenoid hydrocarbons are also mentioned. We constructed statistical graphs for these correlations in Figs. 2 and 3, which are plotted for NFI versus RI and NFI versus ECI.

RI=0.025(±0.01)NFI+2.288(±0.290) 1

R=0.986; R2(adjusted)=0.970; SEE=0.3982; F=695.844; n=21 The relationship between neighborhood face index and edge connectivity index is mentioned in following equation

ECI=0.034(±0.001)NFI+1.729(±0.250) 2

R=0.994; R2(adjusted)=0.987; SEE=0.3438; F=1538.095; n=21.

Figure 2.

Figure 2

Scattered diagram of neighborhood face index versus vertex connectivity (randic) index.

Figure 3.

Figure 3

Scattered diagram of neighborhood face index and edge connectivity index.

Linear regression model between NFI and E

The linear regression models between neighborhood face index and π-electron energies of benzenoid hydrocarbons are constructed in Eq. (3) which shows a better correlation coefficient. Similarly, Eq. (4) describes the multiple linear regression model between π-electron energy, neghborhood face index, vertex connectivity index and edge connectivity index. We constructed statistical graphs for these correlations in Fig. 4, which is plotted between NFI versus π-electron energy (E).

E=0.076(±0.002)NFI+5.435(±0.7071) 3

R=0.990; R2(adjusted)=0.980; SEE=0.9741; F=987.512; n=21.

Figure 4.

Figure 4

Scattered diagram of neighborhood face index and π-electron energy.

Multivariate correlation:

E=0.001(±0.006)NFI+1.503(±0.290)RI+1.085(±0.336)ECI+0.120(±0.3051) 4

R=1.000; R2(adjusted)=0.999; SEE=0.2015; F=7714.178; n=21.

Linear regression model between NFI and BP

The linear regression models between neighborhood face index and boiling points of benzenoid hydrocarbons are constructed in Eq. (5) which shows a better correlation coefficient. Similarly, Eq. (6) describes the multiple linear regression model between boiling points, neghborhood face index, vertex connectivity index and edge connectivity index. We constructed statistical graphs for these correlations in Fig. 5, which is plotted between NFI versus boiling points BP.

BP=1.427(±0.057)NFI+61.88(±61.422) 5

R=0.9994; R2(adjusted)=0.969; SEE=22.5524; F=631.678; n=21. Multivariate correlation:

BP=-0.232(±0.337)NFI+20.871(±17.696)RI+33.201(±20.494)ECI-43.263(±18.600) 6

R=0.996; R2(adjusted)=0.991; SEE=12.303; F=723.172; n=21.

Figure 5.

Figure 5

Scattered diagram of neighborhood face index and boiling points.

Main results

In this section, exact formulae for neighborhood face index of two dimensional Graphene, H-naphthalenic nanosheet and C4C8(S) nanosheet structures are evaluated. Two dimensional chemical structures of these compounds are given in Figs. 6, 7 and 8, respectively. Then, computed results are examined using graphical analysis. The number of unit cells in each row are represented by b and number of rows are represented by a. Utilizing the frequencies of faces, we constructed the tables and computed required results.

Figure 6.

Figure 6

Two dimensional structure of graphene.

Figure 7.

Figure 7

Two dimensional structure of H-naphthalenic nanosheet.

Figure 8.

Figure 8

Two dimensional structure of C4C8(S) nanosheet.

Result 1

Let G be the 2-dimensional molecular graph of graphene with a,b1. Then NFI of G is:

NFI(G)=14b-18fora=154ab-30a+12b+142fora,b114a-18forb=1

Proof

Two prove the required results, we partitioned two dimensional graphene structure containing a rows and b unit cells in following cases.

Case 1: Face index of hydro-benzenoid (1, 1) which is benzene molecule is 48. For, a=1 there exist two types of interval face £32 and £40 with cardinality 2 and b-2, respectively. The degree of external face is 2(13b-1). Then by definition, we have NFI=14b-18 for a = 1.

Case 1: For, b=1 there exist two types of interval face £32 and £40 with cardinality 2 and a-2, respectively. The degree of external face is 2(13a-1). Then by definition, we have NFI=14a-18 for b = 1.

Case 2: When a,b1, there are six types of enternal faces namely, £38, £42, £43, £47, £52, £54 and an external face £. If |£k| denotes the number of faces with neighborhood degree k, then following Table 2 represents the frequencies of such faces.

Table 2.

Numbers of £38, £42, £43, £47, £52, £54 and £ with given number of rows.

Rows |£38| |£42| |£43| |£47| |£52| |£54| dn(£)
(2,b) 2 2 2 2(b − 2) 0 0 26b + 24
(3,b) 2 2 2 2(b − 2) 1 b − 2 26b + 50
(4,b) 2 2 2 2(b − 2) 2 2(b − 2) 26b + 76
(5,b) 2 2 2 2(b − 2) 3 3(b − 2) 26b + 102
. . . . .
. . . . .
. . . . .
(a,b) 2 2 2 2(b − 2) a − 2 (a − 2)(b − 2) 26(a + b) − 28

Utilizing the definition of neighborhood face index and Table 2

NFI(G)=£F(G)dn(£)=£F(G)dn(ν)=u£38dn(u)+u£42dn(u)+u£43dn(u)+u£47dn(u)+u£52dn(u)+u£54dn(u)+u£dn(u)=38(2)+42(2)+43(2)+47(2b-4)+52(a-2)+54(a-2)(b-2)+26(a+b)-28=54ab-30a+12b+142

which completes our proof.

Result 2

Let G be the 2-dimensional molecular graph of H-naphthalenic nanosheet with a,b1. Then NFI of G is:

NFI(G)=186b-72fora=1270ab-80a+60b-280fora,b1190a-76forb=1

Proof

Two prove the required results, we partitioned two dimensional H-naphthalenic nanosheet structure containing a rows and b unit cells in the following cases.

Case 1: For, a=1 there exist two types of interval face £32 and £42 with cardinality (b+1) and 2(b-1), respectively. The degree of external face is 70b-20. Then by definition, we have NFI=186b-72 for a = 1.

Case 2: For, b=1 there exist three types of interval face £38, £44 and £50 with cardinality 4, 2(a-2) and (a-1), respectively. The degree of external face is 52a-21. Then by definition, we have NFI=190a-76 for a = 1.

Case 3: When a,b1, there are eight types of internal faces namely, £34, £36, £38, £44, £48, £52, £54, £72 and an external face £. If |£k| denotes the number of faces with neighborhood degree k, then following Table 3 represents the frequencies of such faces.

Table 3.

Numbers of £34, £36, £38, £44, £48, £52, £54, £72 and £ with given number of rows.

Rows |£34| |£36| |£38| |£44| |£48| |£52| |£54| |£72| dn(£)
(2,b) 2(b-1) 0 4 0 4(b − 1) 2 b − 2 b − 1 70b + 32
(3,b) 2(b − 1) b − 1 4 2 4(b − 1) 4 4b − 6 2(b − 1) 70b + 84
(4,b) 2(b − 1) 2(b − 1) 4 4 4(b − 1) 6 7b − 10 3(b − 1) 70b + 136
(5,b) 2(b − 1) 3(b − 1) 4 6 4(b − 1) 8 10b − 14 4(b − 1) 70b + 188
. . . . .
. . . . .
. . . . .
(a,b) 2(b − 1) (a − 2)(b − 1) 4 2(a − 2) 4(b − 1) 2(a − 1) 3ab − 4a − 5b + 6 (a − 1)(b − 1) 52a + 70b − 72
NFI(G)=£F(G)dn(£)=£F(G)dn(ν)=u£34dn(u)+u£36dn(u)+u£44dn(u)+u£48dn(u)+u£52dn(u)+u£54dn(u)+u£72dn(u)+u£dn(u)=34(2b-2)+36(a-2)(b-2)+38(4)+44(2a-4)+48(4b-4)+52(2a-2)+54(3ab-4a-5b+6)+72(a-1)(b-1)+52a+70b-72=270ab-80a+60b-280

which completes our proof.

Result 3

Let G be the 2-dimensional molecular graph of C4C8(S) nanosheet with a,b1. Then NFI of G is:

NFI(G)=136b-72fora=1216ab-80(a+b)-64fora,b1136a-72forb=1

Proof

Two prove the required results, we partitioned two dimensional C4C8(S) nanosheet structure containing a rows and b unit cells in following cases.

Case 1: For, a=1 there exist three types of interval face £32, £42 and £52 with cardinality b-1, 2 and b-2, respectively. The degree of external face is 52b-20. Then by definition, we have NFI=136b-72 for a=1.

Case 2: For, b=1 there exist three types of interval face £32, £42 and £52 with cardinality a-1, 2 and a-2, respectively. The degree of external face is 52a-20. Then by definition, we have NFI=136a-72 for b=1.

Case 3: When a,b1, there are five types of enternal faces namely, £34, £36, £52, £62, £72 and an external face £. If |£k| denotes the number of faces with neighborhood degree k, then following Table 4 represents the frequencies of such faces.

Table 4.

Numbers of £34, £36, £52, £62, £72, and £ with given number of rows.

Rows |£34| |£36| |£52| |£62| |£72| dn(£)
(2,b) 2b b − 2 4 2(b − 2) b − 1 52b + 32
(3,b) 2(b + 1) 3b − 5 4 2(b − 1) 3b − 4 52b + 84
(4,b) 2(b + 2) 5b − 8 4 2(b) 5b − 7 52b + 136
(5,b) 2(b − 3) 7b − 11 4 2(b + 1) 7b − 10 52b + 188
. . . .
. . . .
. . . .
(a,b) 2(a + b − 2) 2ab − 3a − 3b + 4 4 2(a + b − 4) 2ab − 3a − 3b + 4 52(a + b) − 72
NFI(G)=£F(G)dn(£)=£F(G)dn(ν)=u£34dn(u)+u£36dn(u)+u£52dn(u)+u£62dn(u)+u£72dn(u)+u£dn(u)=34(2a+2b-4)+36(2ab-3a-3b+4)+52(4)+62(2a+2b-8)+72(2ab-3a-3b+4)+52(a+b)-72=216ab-80(a+b)-64

which completes our proof.

Result 4

Let G be the 2-dimensional molecular graph of C4C8(R) nanosheet with a,b1. Then NFI of G is:

NFI(G)=174b+98fora=1108ab+66a+246b-472fora,b1174a+98forb=1

Proof

Two prove the required results, we partitioned two dimensional C4C8(R) nanosheet structure as given in Fig. 9 containing a rows and b unit cells in the following cases.

Figure 9.

Figure 9

Two dimensional structure of C4C8(R) nanosheet.

Case 1: For, a=1 there exist four types of interval face £26, £31, £66 and £68 with cardinality 4, 2(b-1), 2 and (b-2), respectively. The degree of external face is 44b+60. Then by definition, we have NFI=186b-72 for a = 1.

Case 2: For, b=1 there exist four types of interval face £26, £31, £66 and £68 with cardinality 4, 2(a-1), 2 and (a-2), respectively. The degree of external face is 44a+60. Then by definition, we have NFI=186a-72 for b = 1.

Case 3: When a,b1, there are six types of internal faces namely, £26, £31, £36, £68, £70, £72 and an external face £. If |£k| denotes the number of faces with neighborhood degree k, then following Table 5 represents the frequencies of such faces.

Table 5.

Numbers of £26, £31, £36, £68, £70, £72 and £ with given number of rows.

Rows |£26| |£31| |£36| |£68| |£70| |£72| dn(£)
(2,b) 4 2b (b − 1) 4 2(b − 2) 0 44b + 104
(3,b) 4 2(b + 1) 2(b − 1) 4 2(b − 1) (b − 2) 44b + 148
(4,b) 4 2(b + 2) 3(b − 1) 4 2(b − 0) 2(b − 2) 44b + 192
(5,b) 4 2(b + 3) 4(b − 1) 4 2(b + 1) 3(b − 2) 44b +  236
. . . . .
. . . . .
. . . . .
(a,b) 4 (a + b − 2) (a − 1)(b − 1) 4 2(a + b − 4) (a − 2)(b − 2) 44(a + b) + 16
NFI(G)=£F(G)dn(£)=£F(G)dn(ν)=u£26dn(u)+u£31dn(u)+u£36dn(u)+u£68dn(u)+u£70dn(u)+u£72dn(u)+u£dn(u)=26(4)+62(a+b-2)+36(a-1)(b-1)+68(4)+140(a+b-4)+72(a-2)(b-2)+44(a+b)+16=108ab+66a+246b-472

which completes our proof.

Graphical analysis

The graphical representation depicted in Fig. 10 offers a visual insight into the evolving characteristics of topological descriptors as the number of molecules within a chemical structure increases. These figures vividly illustrate how these descriptors change with the expansion of the molecular set, providing a valuable perspective on structural trends. For a more detailed examination of these changes, Table 6 presents the numeric values of the Neighborhood Face Index (NFI). The data in this table reveals a discernible and progressive rise in the calculated NFI values, corresponding to the growth of the chemical structures. This observation underscores the relationship between molecular complexity and the NFI, shedding light on the structural intricacies that emerge as the chemical structure becomes more elaborate.

Figure 10.

Figure 10

Neighborhood face index for (i) Graphene (ii) H-naphthalenic (iii) C4C8(S) and (iv) C4C8(R) nanosheets.

Table 6.

Neighborhood face index for graphene, H-naphthalenic, C4C8(S) and C4C8(R) nanosheets assuming a=b for different values.

[a,b] NFI of graphene nanosheet NFI of hydro naphthalenic nanosheet NFI of C4C8(S) NFI of C4C8(R) nanosheet
[2, 2] 322 760 480 584
[3, 3] 574 2090 1400 1436
[4, 4] 934 3960 2752 2504
[5, 5] 1402 6370 4536 3788
[6, 6] 1978 9320 6752 5288
[7, 7] 2662 12,810 9400 7004
[8, 8] 3454 16,840 12,480 8936
[9, 9] 4354 21,410 15,992 11,084
[10, 10] 5362 26,520 19,936 13,448

Conclusions

In this article, we introduced a new topological invariant namely, neighborhood face index which exhibits an extraordinary correlation coefficient R0.999 for boiling points and R0.990 for π-electron energies of benzenoid hydrocarbons utilizing regression models of NFI with mentioned physio-chemical quantities. We also calculated exact values of newly introduced TI for some carbon nanosheets and analyzed obtained results graphically to understand their behavior with variation in molecular structure as shown in Fig. 10. Our research work motivates researchers to examine the behaviour of different chemical compounds utilizing NFI.

Acknowledgements

The authors have no funding from any source.

Author contributions

The collaborative efforts of A.R., M.I., and F.T.T. were integral to this manuscript. A.R. played a key role in study conceptualization, data acquisition, and manuscript drafting. M.I. contributed significantly to experimental work, data interpretation, and manuscript drafting. F.T.T. provided valuable insights in study design, data analysis, and critically reviewed the manuscript. All authors approved the final version, highlighting their collective commitment to the research.

Data availability

The paper includes the information used to verify the study’s findings.

Competing interests

The authors declare no competing interests.

Footnotes

Publisher's note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Contributor Information

Ali Raza, Email: alleerazza786@gmail.com.

Fikadu Tesgera Tolasa, Email: fikadu@dadu.edu.et.

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