Table 2.
Sample ID | DNA Yield (ng/µL) | A260/280 * | A260/230 * | Method | Number of Reads | 16S rRNA Gene Copies/g | |
---|---|---|---|---|---|---|---|
FM-1 | 1.8 | 1.74 | 0.23 | Normal | 0 | 0 | |
FM-2 | 1.8 | 1.11 | 0.33 | Normal | 0 | 0 | |
FM-3 | 3.2 | 1.2 | 0.17 | Normal | 0 | 0 | |
FM-B1 | 68.8 | 1.55 | 0.4 | Beating | 0 | 0 | |
FM-B2 | 12.5 | 1.61 | 0.18 | Beating | 0 | 0 | |
FM-B3 | 68.8 | 1.55 | 0.4 | Beating | 0 | 0 | |
FM-H1 | 0.5 | 1.91 | 0.05 | Heating | 0 | 0 | |
FM-H2 | 1.6 | 1.21 | 0.08 | Heating | 0 | 0 | |
PowerSoil | FM-H3 | 1.2 | 1.56 | 0.01 | Heating | 0 | 0 |
FM-CER1 | 5 | 0.75 | 0.03 | CER | 0 | 0 | |
FM-CER2 | 2.4 | 2.25 | 0.02 | CER | 0 | 0 | |
FM-CER3 | 6 | 0.87 | 0.06 | CER | 0 | 0 | |
FM-P1 | 9 | 1.62 | 0.03 | PBS | 0 | 0 | |
FM-P2 | 13 | 1.89 | 0.13 | PBS | 0 | 0 | |
FM-P3 | 9 | 3.15 | 0.03 | PBS | 0 | 0 | |
FM-PC1 | 5 | 5.31 | 0.04 | PBS+CER | 0 | 0 | |
FM-PC2 | 9 | 1.28 | 0.01 | PBS+CER | 0 | 0 | |
FM-PC3 | 19 | 1.39 | 0.01 | PBS+CER | 0 | 0 | |
FM-N1 | 1.3 | 1.59 | 0.04 | N2 | 0 | 0 | |
FM-N2 | 1.1 | 1.93 | 0.03 | N2 | 0 | 0 | |
FM-N3 | 3.2 | 1.47 | 0.08 | N2 | 0 | 0 | |
FM-MP1 | 9.144 | 2.47 | 0.01 | Normal | 28,642 | 30,380 | |
MP | FM-MP2 | 9.331 | 2.7 | 0.01 | Normal | 29,743 | 38,550 |
FM-MP3 | 8.391 | 2.62 | 0.01 | Normal | 37,805 | 42,070 |
* A260/280, the ratio of absorbance at 260 nm and 280 nm is used to assess the purity of DNA. A260: DNA absorbs with a peak at 260 nm. A280: protein absorbs with a peak at 280 nm. A260/230: the ratio of absorbance at 260 nm and 230 nm is used as a secondary measure of DNA purity. A260/280 around 1.8 and A260/230 in the range of 2.0–2.1 means the DNA is generally accepted as “pure”.