Abstract
Praying mantids (Mantodea: Mantidae) are iconic insects that have captivated biologists for decades, especially the species with cannibalistic copulatory behavior. This behavior has been cited as evidence that insects lack nociceptive capacities and cannot feel pain; however, this behaviorally driven hypothesis has never been rigorously tested at the genetic or functional level. To enable future studies of nociceptive capabilities in mantids, we sequenced and assembled a draft genome of the Chinese praying mantis (Tenodera sinensis) and identified multiple classes of nociceptive ion channels by comparison to orthologous gene families in Arthropoda. Our assembly—produced using PacBio HiFi reads—is fragmented (total size = 3.03 Gb; N50 = 1.8 Mb; 4,966 contigs), but is highly complete with respect to gene content (BUSCO complete = 98.7% [odb10_insecta]). The size of our assembly is substantially larger than that of most other insects, but is consistent with the size of other mantid genomes. We found that most families of nociceptive ion channels are present in the T. sinensis genome; that they are most closely related to those found in the damp-wood termite (Zootermopsis nevadensis); and that some families have expanded in T. sinensis while others have contracted relative to nearby lineages. Our findings suggest that mantids are likely to possess nociceptive capabilities and provide a foundation for future experimentation regarding ion channel functions and their consequences for insect behavior.
Keywords: Chinese mantis, draft genome, nociception, ion channels
Introduction
The Chinese mantis, Tenodera sinensis (Mantidae), is a large-bodied mantid species native to Asia and the nearby islands. In the late 1800s, the species was accidentally introduced to the Philadelphia area (Blatchley 1920) and has become established throughout the contiguous United States (according to data available from the Global Biodiversity Information Facility, GBIF.org 2023; Fig. 1).
Fig. 1.
GBIF occurrence records of T. sinensis in the United States as of 2023. Color indicates year of record (red, pre-2000; orange, 2000–2009; yellow, 2010–2014; green, 2015–2019; purple, 2020–2023).
As a successful, invasive, generalist predator (Crowder and Snyder 2010), T. sinensis has become an important ecological study species in its nonnative range (Moran and Hurd 1994; Moran et al. 1996; Fagan et al. 2002). Tenodera sinensis are ambush predators, spending 93% of their time waiting for prey (Ratchet and Hurd 1983). Depending on life stage and body size (Hurd et al. 2015), these mantises eat insects (including other mantises), spiders, slugs, and even hummingbirds (Hurd 1988; Iwasaki 1998; Verchot 2014; Mebs et al. 2017; Wilson Rankin et al. 2023).
Tenodera sinensis is probably most well known as a study system for sexual cannibalism, where females may eat males, before, during, or after copulation, though field observations suggest feeding on the male during copulation is relatively rare (<10% of cases; Hurd et al. 1994). Food limitation during oogenesis is expected to drive female mantises to continuously attract mates which, if consumed, increase fecundity (Brown and Barry 2016; O’Hara and Brown 2021). Males may make up 63% of female diets during this crucial reproductive period (Hurd et al. 1994). Males are known to adjust their approach behaviors in response to the perceived threat level posed by a female and female encounter rates (Lelito and Brown 2006; Brown et al. 2012); unlike some other sexually cannibalistic species, male T. sinensis are not self-sacrificial (Buskirk et al. 1984).
Despite males’ well-studied risk avoidance behaviors that suggest a lack of complicity (see Lelito and Brown 2006 and discussion in Christensen and Brown 2018), sexual cannibalism in mantids has featured prominently in discussions of the plausibility of insect pain and, thus, sentience (e.g. as in Eisemann et al. 1984; though see Gibbons and Sarlak 2020 and Barrett and Fischer 2024). Male mantises may be unable to perceive (minimally) mechanically noxious stimuli, which animals typically perceive using nociceptive ion channels in their peripheral sensory neurons. Eisemann et al. (1984) suggest that the lack of nociceptive ability, as demonstrated by males continuing to mate while being cannibalized (e.g. behavioral nonresponsiveness), precludes any plausible further possibility of pain experience. This would make mantids an interesting species for studies of insect pain perception, a field of growing research interest given the development of large-scale insect farming and associated welfare concerns (e.g. van Huis 2021; Gibbons et al. 2022; Barrett and Adcock 2023).
Here, we present an assembly of the Chinese praying mantis genome (T. sinensis) and combine it with existing genomic resources to study the evolution of nociceptive channel evolution across the arthropod phylum. We find that mantids have genes that encode many well-studied arthropod nociceptors dedicated to perceiving diverse noxious stimuli (mechanical, chemical, and thermal). Across the arthropods, we find that some channel families are conserved, whereas copy numbers vary greatly in others. We discuss the potential factors that may underlie this variation and the implications thereof for rearing and domestication of arthropods.
Materials and methods
Mantis rearing
The specimen used for whole-genome sequencing (adult female; Fig. 2) was reared at 50% relative humidity, 27°C, 14:10 L:D from a set of 6 oothecae purchased from Carolina Biological in spring 2023. Mantises were reared collectively until the third instar, then reared in separate containers and fed flightless Drosophila melanogaster and Drosophila hydei, Acheta domesticus cricket nymphs, and Tenebrio molitor mealworm larvae. The single female individual used for analyses (Fig. 2) was flash frozen on liquid nitrogen and sent to the Arizona Genomics Institute (AGI, Tucson, AZ, United States) for DNA extraction and sequencing. A female specimen was chosen as they are the homogametic sex in mantises (Paliulis et al. 2022).
Fig. 2.
Photos of adult female T. sinensis specimen that was used for genome assembly. Scale bar in the left photo represents approximately 1 cm (the mantid stands at an angle and thus changes depth in the photo).
DNA extraction
High molecular weight DNA was extracted from ground thoracic tissue in an extraction buffer with Tris HCl buffer 0.1 M, pH 8.0, EDTA 0.1 M, pH 8, SDS 1%, and Proteinase K in 50°C for 60 min. Mixture was spun down, and aqueous phase was transferred to a new tube; 5 M potassium acetate was added, precipitated on ice, and spun down. After centrifugation, the supernatant was gently extracted with 24:1 chloroform:isoamyl alcohol. The upper phase was transferred to a new tube and DNA precipitated with iso-propanol. DNA was collected by centrifugation, washed with 70% ethanol, air dried, and dissolved thoroughly in 1× TE followed by RNAse treatment. DNA purity was measured with NanoDrop, DNA concentration was measured with Qubit HS kit (Invitrogen, Carlsbad CA, United States), and DNA size was validated by Femto Pulse System (Agilent, Santa Clara, CA, United States).
Genome sequencing
DNA was sheared to an appropriate size range (10–20 kb) using Megaruptor 3 (Diagenode, Denville, NJ, United States) followed by SMRTbell cleanup beads. The sequencing library was constructed following manufacturer’s protocols using SMRTbell Prep kit 3.0. The final library was size selected on a Pippin HT (Sage Science, Beverly, MA, United States) using S1 marker with a 10–25 kb size selection. The recovered final library was quantified with Qubit HS kit (Invitrogen, Carlsbad, CA, United States) and size checked on Femto Pulse System (Agilent, Santa Clara, CA, United States). The final library was prepared for sequencing with PacBio Sequel II Sequencing kit 3.1 for HiFi library, loaded on a single Revio SMRT cells, and sequenced in CCS mode for 24 h.
Genome assembly and annotation
CCS outputs (i.e. HiFi reads; 6,174,839 reads; 95 Gb Q32; mean length = 15,396) were assembled using hifiasm-0.16.0 (Cheng et al. 2021; RRID:SCR_021069) with default settings. Assembly was visualized using Bandage v0.8.1 (Wick et al. 2015; RRID:SCR_022772), which also provided contiguity statistics. Contigs assembled from contaminant reads (N = 3,832) were identified and filtered from our assembly using the blobtools v1.1 pipeline (Laetsch and Blaxter 2017; RRID:SCR_017618) employing minimap v2-2.24 (Li 2018) for alignment and the nt sequence database for taxonomic identification (Camacho et al. 2009). Jellyfish v2.2.10 (Marcais and Kingsford (2011); RRID:SCR_005491) was used for kmer counting (kmer length = 21 bp), and the resulting output was used in the GenomeScope2.0 web portal (Ranallo-Benavidez et al. 2020) to estimate genome size (Supplementary Fig. 1). Filtered assembly quality and polishing was carried out using Inspector v1.0.2 (Chen et al. 2021; see Supplementary Table 1 for details). Gene content completeness was assessed via BUSCO v5.4.7 (Seppey et al. 2019; RRID:SCR_015008) using the Arthropoda_odb10 data set (Fig. 3). Repeat content of the final (filtered and polished) assembly was assessed using RepeatMasker v4.1.3 on default settings (Tarailo-Graovac and Chen 2009; RRID:SCR_012954; Supplementary Table 2) before being structurally annotated with the Helixer v0.3.1 algorithm pipeline (Stiehler et al. 2021; Holst et al. 2021) using the premade invertebrate training data set. Functional annotation was done using eggnog-mapper v5.1.12 (Huerta-Cepas et al. 2019; Cantalapiedra et al. 2021; RRID:SCR_002456).
Fig. 3.
BUSCO assessment of T. sinensis: our filtered/polished assembly and its annotation. Annotation assessment was performed in proteome mode.
Gene family analysis
We selected 9 receptor genes associated with nociception when expressed in class III or class IV multidendritic sensory neurons in Arthropoda. This included 5 sensory receptor channels with GO terms for the detection of thermal, mechanical, and/or chemical stimuli involved in the sensory perception of pain (GO0050965, thermal: pain, TRPA1; GO0050966, mechanical: rpk, pain, ppk, ppk26; GO0050968, chemical: ppk, ppk26, TRPA1), TRPm, Pkd2, and NOMPC (ion channels with a role in cold nociception; Turner et al. 2016) and 2 mechanoelectrical transduction channels linked to noxious touch sensitization, NOMPC and Piezo (Kim et al. 2012; Hehlert et al. 2021). These 7 ortholog families were downloaded from the eggnog database (V5.0, http://eggnog5.embl.de). Additional species of interest not present in the database (Hermetia illucens, BioProject: PRJEB37575; T. molitor, BioProject: PRJNA820846; Manduca sexta, BioProject: PRJNA658700; Penaeus vannamei, BioProject: PRJNA438564; A. domesticus, BioProject: PRJNA706033; Bombyx mandarina, BioProject: PRJDB13954; Xiang et al. 2018; Zhang et al. 2019; Generalovic et al. 2021; Gershman et al. 2021; Dossey et al. 2023; Kaur et al. 2023) were manually added to our list by functionally annotating available protein sequences using eggnog-mapper, which uses the eggnog5.0 database to identify orthologous gene families. Acheta domesticus did not have publicly available protein sequences; thus, we structurally annotated it using Helixer v0.3.1 (Stiehler et al. 2021; Holst et al. 2021) before functional annotation. Phylogenetic analysis (sequence alignment and tree building) of PAINLESS peptide sequences (Fig. 4) was done using Clustal Omega (https://www.ebi.ac.uk/Tools/msa/clustalo/; Madeira et al. 2022; RRID:SCR_001591) before visualization using the ETE TreeView web portal (http://etetoolkit.org/treeview/; Huerta-Cepas et al. 2016). Gene families of interest were also obtained from the newest (v6; Supplementary Table 3) eggnog database (eggnog6.embl.de; Hernández-Plaza et al. 2023) but additional species were not added.
Fig. 4.
Gene tree showing the relatedness of painless genes across our sample of arthropods. Tenodera sinensis genes cluster most closely with those of Z. nevadensis (Blattodea). Genes with resolved species names were present in the eggnog5 database (Orthofamily 41TMZ), whereas those with only gene IDs at branch tips are those of our additional species (Adom, A. domesticus; Boma, B. mandarina; Msex, M. sexta; Tmol, T. molitor; Tsin, T. sinensis).
Results and discussion
Tenodera sinensis genome assembly and annotation
The initial assembly was highly fragmented by long-read genome assembly standards (number of contigs = 8,798; N50 = 1.6 Mb; total size = 3.3 Gb) and roughly 20% larger than our GenomeScope prediction (2.7 Gb; Supplementary Fig. 1). Blobtools analysis determined that the assembly was heavily contaminated with viral and bacterial contigs (N = 3,832, Supplementary Fig. 2; 18.81% of raw reads, Supplementary Table 1). Our contaminant-filtered assembly was still found to be fragmented and larger than expected (number of contigs = 4,966; N50 = 1.8 Gb; total length = 3.03 Gb; Supplementary Table 1). This is similar to genome sizes reported for other mantis species (Hymenopus coronatus = 2.88 Gb; Deroplatys lobata = 3.96 Gb; Huang et al. 2023). RepeatMasker found that 68.83% of the genome was composed of repetitive elements (Supplementary Table 2), predominantly retroelements (18.41%) and DNA transposons (18.08%). Inspector analysis found that our assembly had a number of structural errors (N = 593) and small-scale errors (N = 83,917; 27.7 per Mb), but polishing was able to remove most small-scale errors (after polishing N = 8,788; 2.9 per Mb; see Supplementary Table 1 for details). Despite assembly errors, BUSCO analysis determined that our assembly was highly complete [odb10_insecta complete = 98.9% (single copy = 93.5%, duplicated = 5.4%), fragmented = 0.5%, missing = 0.6%; Fig. 3]. Helixer structurally annotated 24,673 genes in our assembly, 14,092 of which were functionally annotated via comparison to the eggnog-mapper database using only orthology to Arthropoda. BUSCO assessment of our annotation showed that a substantial portion of total gene content is likely not represented [odb10_insecta complete = 78.2% (single copy = 75.1%, duplicated = 3.1%), fragmented = 7.9%, missing = 13.9%; Fig. 3]; however, this was also the case (albeit less drastically) for our Helixer annotation of A. domesticus [odb10_insecta complete = 86.7% (single copy = 82.7%, duplicated = 4.0%), fragmented = 7.4%, missing = 5.9%; BUSCO complete in assembly = 94.8%; Dossey et al. 2023] suggesting there may be biases in Helixer's premade invertebrate training data set, which is dominated by insects in the orders Diptera and Lepidoptera (details regarding Helixer training data sets can be found at https://uni-duesseldorf.sciebo.de/s/lQTB7HYISW71Wi0). Thus, the lower than expected recovery of single-copy orthologs may represent this bias rather than the quality of our assembly. Summary of assembly and annotation statistics is found in Table 1, with further details provided in Supplementary Table 1.
Table 1.
Summary statistics of the T. sinensis draft assembly and annotation.
| Feature | Value |
|---|---|
| Assembly size | 3,032,411,605 bp |
| Number of contigs | 4,966 |
| Largest contig | 16,238,500 bp |
| Contig N50 | 1,806,165 bp |
| Repeat content | 68.83% |
| GC content | 37.99% |
| Assembly BUSCO complete (odb10_insecta) | 98.90% |
| Annotation BUSCO complete (odb10_insecta) | 78.20% |
| Number of genes | 24,673 |
| Functionally annotated genes | 14,092 |
Variation in ion channel copy numbers in T. sinensis
Tenodera sinensis was found to have at least 1 copy of 8 of 9 genes for receptor channels of interest, with the exception being pkd2 (Table 2). Pkd2 acts as a direct cold sensor in class III md neurons in D. melanogaster and is necessary (alongside NOMPC and TRPm) for aversive responses to cold behavior (Turner et al. 2016). Tenodera sinensis was found to have an expansion in both nompC and trpm copy number (from 1 each in D. melanogaster to 3 each in T. sinensis). The lack of pkd2 could suggest an inability to directly sense aversive levels of cold in T. sinensis despite the presence of nompC and trpm, but given its function has been characterized solely in D. melanogaster and we could not detect an ortholog in many insect genomes, it is difficult to infer this with confidence. Further study of T. sinensis behavior and physiology would be needed to assess function. Other orders of insects have evolved novel thermal nociceptors following the loss of other thermosensitive nociceptive ion channels (e.g. duplication and neofunctionalization of waterwitch into HsTRPA to complement the loss of TRPA1 in the Hymenoptera; Kohno et al. 2010). Further, there is often more than 1 receptor for assessing potentially noxious thermal information (e.g. the heat sensitivity of pyrexia, painless, and TRPA1; Tracey et al. 2003; Lee et al. 2005 ; Wang et al. 2009).
Table 2.
Ion channel gene families obtained from the eggnog5 database.
| Orthogroup | 41TMZ | 41U79 | 41UGV | 41UWY | 41VXR | 41X6F | 41XIN | ||
|---|---|---|---|---|---|---|---|---|---|
| Order | Family | Representative gene name | pain | NompC | trpm | Piezo | Pkd2 | ppk/rpk/ppk26 | TrpA1 |
| Trombidiformes | Tetranychidae | Tetranychus urticae | 0 | 2 | 1 | 2 | 1 | 0 | 0 |
| Chilopoda | Geophilomorpha | Strigamia maritima | 0 | 1 | 2 | 2 | 1 | 0 | 2 |
| Anomopoda | Daphniidae | Daphnia pulex | 1 | 2 | 2 | 0 | 0 | 0 | 0 |
| Decapoda | Penaeidae | Penaeus vannamei | 0 | 1 | 2 | 2 | 0 | 0 | 2 |
| Blattodea | Archotermopsidae | Zootermopsis nevadensis | 9 | 0 | 1 | 1 | 6 | 0 | 1 |
| Mantodea | Mantidae | Tenodera sinensis | 5 | 3 | 3 | 2 | 0 | 5 | 1 |
| Psocodea | Pediculidae | Pediculus humanus | 1 | 1 | 1 | 3 | 1 | 0 | 1 |
| Hemiptera | Aphididae | Acyrthosiphon pisum | 1 | 1 | 2 | 3 | 1 | 3 | 1 |
| Hemiptera | Reduviidae | Rhodnius prolixus | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
| Orthoptera | Gryllidae | Acheta domesticus | 1 | 4 | 1 | 2 | 0 | 12 | 1 |
| Hymenoptera | Formicidae | Acromyrmex echinatior | 1 | 4 | 1 | 1 | 0 | 0 | 0 |
| Hymenoptera | Formicidae | Atta cephalotes | 1 | 5 | 2 | 1 | 0 | 0 | 0 |
| Hymenoptera | Braconidae | Microplitis demolitor | 0 | 2 | 1 | 2 | 0 | 0 | 0 |
| Hymenoptera | Pteromalidae | Nasonia vitripennis | 1 | 1 | 1 | 2 | 0 | 0 | 0 |
| Hymenoptera | Apidae | Apis mellifera | 1 | 4 | 1 | 1 | 0 | 0 | 0 |
| Hymenoptera | Apidae | Bombus impatiens | 1 | 2 | 1 | 1 | 0 | 0 | 0 |
| Coleoptera | Tenebrionidae | Tribolium castaneum | 3 | 1 | 1 | 1 | 1 | 17 | 1 |
| Coleoptera | Tenebrionidae | Tenebrio molitor | 8 | 1 | 1 | 1 | 1 | 19 | 1 |
| Lepidoptera | Nymphalidae | Danaus plexippus | 1 | 1 | 1 | 1 | 0 | 3 | 1 |
| Lepidoptera | Nymphalidae | Heliconius melpomene | 1 | 1 | 2 | 1 | 0 | 1 | 1 |
| Lepidoptera | Sphingidae | Manduca sexta | 1 | 2 | 8 | 7 | 0 | 4 | 2 |
| Lepidoptera | Bombycidae | Bombyx mandarina | 1 | 2 | 5 | 8 | 0 | 3 | 1 |
| Lepidoptera | Bombycidae | Bombyx mori | 1 | 1 | 2 | 2 | 0 | 2 | 1 |
| Diptera | Culicidae | Aedes aegypti | 4 | 2 | 2 | 1 | 0 | 20 | 2 |
| Diptera | Culicidae | Anopheles darlingi | 4 | 1 | 1 | 1 | 0 | 4 | 2 |
| Diptera | Culicidae | Anopheles gambiae | 4 | 1 | 1 | 1 | 0 | 6 | 1 |
| Diptera | Culicidae | Culex quinquefasciatus | 6 | 2 | 2 | 3 | 0 | 31 | 2 |
| Diptera | Tephritidae | Ceratitis capitata | 1 | 1 | 1 | 1 | 2 | 3 | 1 |
| Diptera | Drosophilidae | Drosophila ananassae | 1 | 2 | 2 | 1 | 1 | 3 | 1 |
| Diptera | Drosophilidae | Drosophila erecta | 1 | 1 | 2 | 1 | 1 | 3 | 1 |
| Diptera | Drosophilidae | Drosophila grimshawi | 1 | 1 | 2 | 2 | 3 | 3 | 1 |
| Diptera | Drosophilidae | Drosophila melanogaster | 1 | 1 | 1 | 5 | 1 | 3 | 1 |
| Diptera | Drosophilidae | Drosophila mojavensis | 1 | 1 | 2 | 2 | 4 | 4 | 1 |
| Diptera | Drosophilidae | Drosophila persimilis | 1 | 1 | 2 | 1 | 5 | 4 | 2 |
| Diptera | Drosophilidae | Drosophila pseudoobscura | 1 | 1 | 2 | 2 | 5 | 3 | 2 |
| Diptera | Drosophilidae | Drosophila virilis | 2 | 1 | 2 | 2 | 3 | 3 | 1 |
| Diptera | Drosophilidae | Drosophila willistoni | 2 | 1 | 1 | 2 | 1 | 3 | 1 |
| Diptera | Drosophilidae | Drosophila yakuba | 1 | 1 | 2 | 1 | 1 | 3 | 1 |
| Diptera | Muscidae | Musca domestica | 1 | 1 | 1 | 2 | 1 | 11 | 2 |
| Diptera | Hermetiinae | Hermetia illucens | 0 | 2 | 2 | 1 | 0 | 2 | 6 |
This table includes gene counts of species included in the database and those obtained from eggnog-mapper outputs of additional species.
Prior arguments by Eisemann et al. (1984) and others have hypothesized that behavioral nonresponsiveness to injury in insects, such as an T. sinensis sexual cannibalism, suggests insects are unlikely to perceive (minimally, mechanically) noxious stimuli and thus unlikely to have an adaptive role for pain and sentience. However, since these publications, the genetic components of nociception have been found to be ancient and highly conserved (e.g. Peng et al. 2015); it is, therefore, unsurprising that our data suggest that chemical, mechanical, and thermal nociception are plausible in T. sinensis. Still, further tests that confirm (1) these channels are expressed in multidendritic sensory neurons and (2) they have a nociceptive function in the Mantodea will be important for conclusively demonstrating nociception in mantids.
Differential expression and splicing into novel isoforms can lead to different functional roles of these receptors in different cell types (e.g. dTRPA1; Zhong et al. 2012; Gu et al. 2022). Amino acid substitution can also lead to variation in channel sensitivity to noxious stimuli, even for orthologous channels (e.g. loss of chemical sensitivity in SiHsTRPA vs AmHsTRP; Wang et al. 2018). Altogether, these various mechanisms for generating functional plasticity of these receptors in different tissue types suggest moderate caution should be employed when suggesting the presence or absence of a specific gene corresponds to the presence or absence of a specific nociceptive ability in Mantodea. Still, we may broadly expect some perception of noxious stimuli to be highly plausible given this genetic information and the ancient and highly conserved nature of many of these genes. If male mantises are, indeed, able to perceive a mechanically noxious stimulus (such as female cannibalism), this suggests mechanisms other than a lack of nociceptive perception underpin any instances of apparent behavioral unresponsiveness (see Gibbons and Sarlak 2020). Instead, our genetic data support prior behavioral evidence that shows male mantises attempt to avoid being cannibalized (Lelito and Brown 2006; Brown et al. 2012) and provides further support for the ancient and highly conserved nature of the peripheral components of pain pathways across Arthropoda.
Variation in ion channel copy number across Arthropoda
All the gene families except the ppk/rpk/ppk26 family saw reasonably similar ranges of copy number across the surveyed arthropods (from 0 up to 6–9 copies). However, greater variation (0–31 copies) was found in the ppk/rpk/ppk26 family, with roles in mechanical and chemical nociception. This included substantial intraorder variation (e.g. 2 copies in H. illucens, 11 copies in Musca domestica, and 31 copies in Culex quinquefasciatus, all dipterans). Prior research on mosquitoes has found that additional ion channel gene copies play a role in nonnociceptive sensory processes, specifically heat perception involved with prey location (Wang et al. 2009). Our results suggest that ion channel copy numbers are highly variable and that they are likely to play an important role in the evolution of Arthropod sensory systems, but more precise studies of expression dynamics and cellular functions are necessary to better understand this process.
Our search also specifically focused on insects that are mass reared (such as the black soldier fly, H. illucens) or even domesticated (such as the silkworm moth, Bombyx mori) to see if there were any patterns of ion channel loss or duplication associated with the novel ecological conditions posed by rearing at scale on farms under significant human management. Generally, farmed species retained at least 1 copy of all genes except pkd2, with only T. molitor and M. domestica having a copy of this gene. This could suggest, as in T. sinensis, some loss of cold nociception capabilities that should be confirmed functionally (and considered alongside the aforementioned caveats).
The only other gene loss event was painless in H. illucens; however, H. illucens had significant duplication of trpa1 (6 copies), where no other arthropod species in our study had more than 2 copies of this gene. It is possible the additional copies of trpa1 may serve to recover some of the lost functions of painless as both are TRPA proteins that have roles, for instance, in thermal nociception in other Diptera (Neely et al. 2011; Hwang et al. 2012). Tenebrio molitor had significant duplication of painless (8 copies) and ppk/rpk/ppk26 (19 copies). Acheta domesticus also had significant duplication of ppk/rpk/ppk26 (12 copies). Bombyx mandarina had significant duplication of piezo (8 copies) and trpm (5 copies). These genes were both highly expressed in the 2 lepidopterans—B. mandarina and Manduca sexta—but not in any other order we reviewed. Overall, these results suggest that domestication and/or mass rearing do not result in nociceptive ion channel loss in insects, which means it will still be important to monitor and reduce the occurrence of noxious stimuli in mass-rearing facilities as part of ethical mini-livestock husbandry and slaughter.
Conclusion
In summary, we have produced a high-quality draft genome of the Chinese mantis (T. sinensis) and used it to identify multiple putative nociceptive ion channels. Comparative analyses suggest that some of these genes have undergone multiple duplications that are shared with Blattodea, whereas others have been lost in these closely related clades. These findings suggest that mantids are likely capable of perceiving different types of noxious stimuli (extreme heat/cold, mechanical damage, etc.). Future research into their precise functional roles will elucidate the evolution of nociception in an iconic sexually cannibalistic species.
Supplementary Material
Acknowledgments
Thanks to Alexander Glica and Andrew Fairclough for helping to rear mantises and Chris Wirth for taking our voucher specimens.
Contributor Information
Jay K Goldberg, Department of Ecology and Evolutionary Biology, University of Arizona, 1041 E Lowell St, Tucson, AZ 85741, USA; Department of Crop Genetics, John Innes Centre, Norwich Research Park, Colney Ln, Norwich, Norfolk NR4 7UH, UK.
R Keating Godfrey, Department of Biological Sciences, Florida International University, 11200 SW 8th St, Miami, FL 33199, USA.
Meghan Barrett, Department of Biology, Indiana University Purdue University Indianapolis, 420 University Blvd, Indianapolis, IN 46202, USA.
Data availability
A male nymph and adult female from the same set of oothecae were vouchered at Purdue Entomological Research Collection (PERC 0154978 and PERC 0154979). The entire individual used for sequencing was destroyed during sampling. Raw reads and our assembly are available under BioProject PRJNA1036567. No new code was written for this study, but scripts used to run existing programs are found at https://github.com/caterpillar-coevolution/Tsinensis_genome_V1 alongside annotation files.
Supplemental material available at G3 online.
Funding
This project was funded by Rethink Priorities (EIN 84-3896318).
Literature cited
- Barrett M, Adcock SJJ. 2023. Animal welfare science: an integral piece of sustainable insect agriculture. J Insects Food Feed. 1:1–15. doi: 10.1163/23524588-20230126. [DOI] [Google Scholar]
- Barrett M, Fischer B. 2024. I. The era beyond Eisemann, et al. (1984): insect pain in the 21st century. OSF Preprints. https://osf.io/preprints/osf/ng7pu.
- Blatchley WS. 1920. Orthoptera of Northeastern America: With Special Reference to the Faunas of Indiana and Florida. Indianapolis, IN: The Nature Publishing Company. [Google Scholar]
- Brown WD, Barry KL. 2016. Sexual cannibalism increases male material investment in offspring: quantifying terminal reproductive effort in a praying mantis. Proc Biol Sci. 283(1833):20160656. doi: 10.1098/rspb.2016.0656. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brown WD, Muntz GA, Ladowski AJ. 2012. Low mate encounter rate increases male risk taking in a sexually cannibalistic praying mantis. PLoS One 7(4):e35377. doi: 10.1371/journal.pone.0035377. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buskirk RE, Frohlich C, Ross KG. 1984. The natural selection of sexual cannibalism. Am Nat. 123(5):612–625. doi: 10.1086/284227. [DOI] [Google Scholar]
- Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST+: architecture and applications. BMC Bioinformatics 10(1):421. doi: 10.1186/1471-2105-10-421. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cantalapiedra CP, Hernández-Plaza A, Letunic I, Bork P, Huerta-Cepas J. 2021. eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale. Mol Biol Evol. 38(12):5825–5829. doi: 10.1093/molbev/msab293. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen Y, Zhang Y, Wang AY, Gao M, Chong Z. 2021. Accurate long-read de novo assembly evaluation with Inspector. Genome Biol. 22(1):312. doi: 10.1186/s13059-021-02527-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cheng H, Concepcion GT, Feng X, Zhang H, Li H. 2021. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nat Methods. 18(2):170–175. doi: 10.1038/s41592-020-01056-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Christensen T, Brown WD. 2018. Population structure, movement patterns, and frequency of multiple matings in Tenodera sinensis (Mantodea: Mantidae). Environ Entomol. 47(3):676–683. doi: 10.1093/ee/nvy048. [DOI] [PubMed] [Google Scholar]
- Crowder DW, Snyder WE. 2010. Eating their way to the top? Mechanisms underlying the success of invasive insect generalist predators. Biol Invasions. 12(9):2857–2876. doi: 10.1007/s10530-010-9733-8. [DOI] [Google Scholar]
- Dossey AT, Oppert B, Chu F-C, Lorenzen MD, Scheffler B, Simpson S, Koren S, Johnston JS, Kataoka K, Ide K. 2023. Genome and genetic engineering of the house cricket (Acheta domesticus): a resource for sustainable agriculture. Biomolecules 13:589. 10.3390/biom13040589. [DOI] [PMC free article] [PubMed]
- Eisemann CH, Jorgensen WK, Merritt DJ, Rice MJ, Cribb BW, Webb PD, Zalucki MP. 1984. Do insects feel pain?—a biological view. Experientia 40(2):164–167. doi: 10.1007/BF01963580. [DOI] [Google Scholar]
- Fagan WF, Moran MD, Rango JJ, Hurd LE. 2002. Community effects of praying mantids: a meta-analysis of the influences of species identity and experimental design. Ecol Entomol. 27(4):385–395. doi: 10.1046/j.1365-2311.2002.00425.x. [DOI] [Google Scholar]
- GBIF.org . 2023. GBIF occurrence download. 10.15468/dl.hrttgt. [DOI]
- Generalovic TN, McCarthy SA, Warren IA, Wood JMD, Torrance J, Sims Y, Quail M, Howe K, Pipan M, Durbin R, et al. 2021. A high-quality, chromosome-level genome assembly of the black soldier fly (Hermetia illucens L.). G3 (Bethesda). 11(5):jkab085. doi: 10.1093/g3journal/jkab085. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gershman A, Romer TG, Fan Y, Razaghi R, Smith WA, Timp W. 2021. De novo genome assembly of the tobacco hornworm moth (Manduca sexta). G3 (Bethesda). 11(1):jkaa047. doi: 10.1093/g3journal/jkaa047. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gibbons M, Crump A, Barrett M, Sarlak S, Birch J, Chittka L. 2022. Can insects feel pain? A review of the neural and behavioral evidence. Adv Insect Physiol. 63:155–229. doi: 10.1016/bs.aiip.2022.10.001. [DOI] [Google Scholar]
- Gibbons M, Sarlak S. 2020. Inhibition of pain or response to injury in invertebrates and vertebrates. Anim Sentience. 29:34. https://doi.org/10.5129. [Google Scholar]
- Gu P, Wang F, Shang Y, Liu J, Gong J, Xie W, Han J, Xiang Y. 2022. Nociception and hypersensitivity involve distinct neurons and molecular transducers in Drosophila. Proc Natl Acad Sci U S A. 119(12):e2113645119. doi: 10.1073/pnas.2113645119. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hehlert P, Zhang W, Göpfert MC. 2021. Drosophila mechanosensory transduction. Trends Neurosci. 44(4):325–335. doi: 10.1016/j.tins.2020.11.001. [DOI] [PubMed] [Google Scholar]
- Hernández-Plaza A, Szklarczyk D, Botas J, Cantalapiedra CP, Giner-Lamia J, Mende DR, Kirsch R, Rattei T, Letunic I, Jensen LJ, et al. 2023. eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic Acids Res. 51(D1):D389–D394. doi: 10.1093/nar/gkac1022. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holst F, Bolger A, Günther C, Maß J, Triesch S, Kindel F, Kiel N, Saadat N, Ebenhöh O, Usadel B, et al. 2021. Helixer—de novo prediction of primary eukaryotic gene models using deep learning. Bioinformatics. 1(36):5291–5298. doi: 10.1101/2023.02.06.527280. [DOI] [Google Scholar]
- Huang G, Song L, Du X, Huang X, Wei F. 2023. Evolutionary genomics of camouflage innovation in the orchid mantis. Nat Commun. 14(1):4821. doi: 10.1038/s41467-023-40355-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huerta-Cepas J, Serra F, Bork P. 2016. ETE 3: reconstruction, analysis, and visualization of phylogenomic data. Mol Biol Evol. 33(6):1635–1638. doi: 10.1093/molbev/msw046. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huerta-Cepas J, Szklarczyk D, Heller D, Hernández-Plaza A, Forslund SK, Cook H, Mende DR, Letunic I, Rattei T, Jensen LJ, et al. 2019. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res. 47(D1):D309–D314. doi: 10.1093/nar/gky1085. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hurd LE. 1988. Consequences of divergent egg phenology to predation and coexistence in two sympatric, congeneric mantids (Orthoptera: Mantidae). Oecologia 76(4):547–550. doi: 10.1007/BF00397868. [DOI] [PubMed] [Google Scholar]
- Hurd LE, Dehart PAP, Taylor JM, Campbell MC, Shearer MM. 2015. The ontogenetically variable trophic niche of a praying mantid revealed by stable isotope analysis. Environ Entomol. 44(2):239–245. doi: 10.1093/ee/nvv004. [DOI] [PubMed] [Google Scholar]
- Hurd LE, Eisenberg RM, Fagan WF, Tilmon KJ, Snyder WE, Vandersall KS, Datz SG, Welch JD. 1994. Cannibalism reverses male-biased sex ratio in adult mantids: female strategy against food limitation? Oikos 69(2):193–198. doi: 10.2307/3546137. [DOI] [Google Scholar]
- Hwang RY, Stearns NA, Tracey WD. 2012. The ankyrin repeat domain of the TRPA protein painless is important for thermal nociception but not mechanical nociception. PLoS One 7(1):e30090. doi: 10.1371/journal.pone.0030090. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Iwasaki T. 1998. Prey menus of two praying mantises, Tenodera aridifolia (Stoll) and Tenodera angustipennis Saussure (Mantodea: Mantidae). Entomol Sci. 1:529–532. [Google Scholar]
- Kaur S, Stinson SA, diCenzo GC. 2023. Whole genome assemblies of Zophobas morio and Tenebrio molitor. G3 (Bethesda). 13(6):jkad079. doi: 10.1093/g3journal/jkad079. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim SE, Coste B, Chadha A, Cook B, Patapoutian A. 2012. The role of Drosophila Piezo in mechanical nociception. Nature 483(7388):209–212. doi: 10.1038/nature10801. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kohno K, Sokabe T, Tominaga M, Kadowaki T. 2010. Honey bee thermal/chemical sensor, AmHsTRPA, reveals neofunctionalization and loss of transient receptor potential channel genes. J Neurosci. 30(37):12219–12229. doi: 10.1523/JNEUROSCI.2001-10.2010. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Laetsch DR, Blaxter ML. 2017. BlobTools: interrogation of genome assemblies. F1000Res. 6:1287. doi: 10.12688/f1000research.12232.1. [DOI] [Google Scholar]
- Lee Y, Lee J, Bang S, Hyun S, Kang J, Hong ST, Bae E, Kaang BK, Kim J. 2005. Pyrexia is a new thermal transient receptor potential channel endowing tolerance to high temperatures in Drosophila melanogaster. Nat Genet. 37(3):305–310. doi: 10.1038/ng1513. [DOI] [PubMed] [Google Scholar]
- Lelito JP, Brown WD. 2006. Complicity or conflict over sexual cannibalism? Male risk taking in the praying mantis Tenodera aridifolia sinensis. Am Nat. 168(2):263–269. doi: 10.1086/505757. [DOI] [PubMed] [Google Scholar]
- Li H. 2018. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics 34(18):3094–3100. doi: 10.1093/bioinformatics/bty191. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Madeira F, Pearce M, Tivey ARN, Basutkar P, Lee J, Edbali O, Madhusoodanan N, Kolesnikov A, Lopez R. 2022. Search and sequence analysis tools services from EMBL-EBI in 2022. Nucleic Acids Res. 50(W1):W276–W279. doi: 10.1093/nar/gkac240. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Marcais G, Kingsford C. 2011. Jellyfish: a fast k-mer counter. Bioinformatics. 27(6):764–770. doi: 10.1093/bioinformatics/btr0112012. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mebs D, Wunder C, Pogoda W, Toennes SW. 2017. Feeding on toxic prey. The praying mantis (Mantodea) as predator of poisonous butterfly and moth (Lepidoptera) caterpillars. Toxicon 131:16–19. doi: 10.1016/j.toxicon.2017.03.010. [DOI] [PubMed] [Google Scholar]
- Moran MD, Hurd LE. 1994. Short-term responses to elevated predator densities: noncompetitive intraguild interactions and behavior. Oecologia 98(3–4):269–273. doi: 10.1007/BF00324214. [DOI] [PubMed] [Google Scholar]
- Moran MD, Rooney TP, Hurd LE. 1996. Top-down cascade from a bitrophic predator in an old-field community. Ecology 77(7):2219–2227. doi: 10.2307/2265715. [DOI] [Google Scholar]
- Neely GG, Keene AC, Duchek P, Chang EC, Wang Q-P, Aksoy YA, Rosenzweig M, Costigan M, Woolf CJ, Garrity PA, et al. 2011. Trpa1 regulates thermal nociception in Drosophila. PLoS One 6(8):e24343. doi: 10.1371/journal.pone.0024343. [DOI] [PMC free article] [PubMed] [Google Scholar]
- O’Hara MK, Brown WD. 2021. Sexual cannibalism increases female egg production in the Chinese praying mantid (Tenodera sinensis). J Insect Behav. 34(3):127–135. doi: 10.1007/s10905-021-09776-y. [DOI] [Google Scholar]
- Paliulis LV, Stowe EL, Hashemi L, Pedraza-Aguado N, Striese C, Tulok S, Müller-Reichert T, Fabig G. 2022. Chromosome number, sex determination, and meiotic chromosome behavior in the praying mantid Hierodula membranacea. PLoS One 17(8):e0272978. doi: 10.1371/journal.pone.0272978. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Peng G, Shi X, Kadowaki T. 2015. Evolution of TRP channels inferred by their classification in diverse animal species. Mol Phylogenet Evol. 84:145–157. doi: 10.1016/j.ympev.2014.06.016. [DOI] [PubMed] [Google Scholar]
- Ranallo-Benavidez TR, Jaron KS, Schatz MC. 2020. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes. Nature Commun. 11(1):1432. doi: 10.1038/s41467-020-14998-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ratchet IH, Hurd LE. 1983. Ecological relationships of three co-occurring mantids, Tenodera sinensis (Saussure), T. angustipennis (Saussure), and Mantis religiosa (Linnaeus). Am Midl Natural. 110(2):240–248. doi: 10.2307/2425265. [DOI] [Google Scholar]
- Seppey M, Manni M, Zdobnov EM. 2019. BUSCO: assessing genome assembly and annotation completeness. In: Kollmar M, editors. Gene Prediction: Methods and Protocols, Methods in Molecular Biology. New York, NY: Springer. p. 227–245. 10.1007/978-1-4939-9173-0_14. [DOI] [PubMed] [Google Scholar]
- Stiehler F, Steinborn M, Scholz S, Dey D, Weber APM, Denton AK. 2021. Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning. Bioinformatics 36(22–23):5291–5298. doi: 10.1093/bioinformatics/btaa1044. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tarailo-Graovac M, Chen N. 2009. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinform. Chapter 4(1):4.10.1–4.10.14. doi: 10.1002/0471250953.bi0410s25. [DOI] [PubMed] [Google Scholar]
- Tracey WD Jr, Wilson RI, Laurent G, Benzer S. 2003. Painless, a Drosophila gene essential for nociception. Cell 113(2):261–273. doi: 10.1016/S0092-8674(03)00272-1. [DOI] [PubMed] [Google Scholar]
- Turner HN, Armengol K, Patel AA, Himmel NJ, Sullivan L, Iyer SC, Bhattacharya S, Iyer EPR, Landry C, Galko MJ, et al. 2016. The TRP channels Pkd2, NompC, and Trpm act in cold-sensing neurons to mediate unique aversive behaviors to noxious cold in Drosophila. Curr Biol. 26(23):3116–3128. doi: 10.1016/j.cub.2016.09.038. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Van Huis A. 2021. Welfare of farmed insects. J Insects Food Feed. 7(5):573–584. doi: 10.3920/JIFF2020.0061. [DOI] [Google Scholar]
- Verchot M. 2014. Praying mantis vs. hummingbird. Audubon Society. https://www.audubon.org/news/praying-mantis-vs-hummingbird.
- Wang X, Li T, Kashio M, Xu Y, Tominaga M, Kadowaki T. 2018. HsTRPA of the red imported fire ant, Solenopsis invicta, functions as a nocisensor and uncovers the evolutionary plasticity of HsTRPA channels. eNeuro 5(1):ENEURO.0327-17.2018. doi: 10.1523/ENEURO.0327-17.2018. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang G, Qiu YT, Lu T, Kwon H-W, Pitts JR, van Loon JJA, Takken W, Zwiebel LJ. 2009. Anopheles gambiae TRPA1 is a heat-activated channel expressed in thermosensitive sensilla of female antennae. Eur J Neurosci. 30(6):967–974. doi: 10.1111/j.1460-9568.2009.06901.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wick RR, Schultz MB, Zobel J, Holt KE. 2015. Bandage: interactive visualization of de novo genome assemblies. Bioinformatics 31(20):3350–3352. doi: 10.1093/bioinformatics/btv383. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilson Rankin EE, Knowlton JL, Shmerling AJ, Hoey-Chamberlain R. 2023. Diets of two non-native praying mantids (Tenodera sinensis and Mantis religiosa) show consumption of arthropods across all ecological roles. Food Webs 35:e00280. doi: 10.1016/j.fooweb.2023.e00280. [DOI] [Google Scholar]
- Xiang H, Liu X, Li M, Zhu Y, Wang L, Cui Y, Liu L, Fang G, Qian H, Xu A, et al. 2018. The evolutionary road from wild moth to domestic silkworm. Nat Ecol Evol. 2(8):1268–1279. doi: 10.1038/s41559-018-0593-4. [DOI] [PubMed] [Google Scholar]
- Zhang X, Yuan J, Sun Y, Li S, Gao Y, Yu Y, Liu C, Wang Q, Lv X, Zhang X, et al. 2019. Penaeid shrimp genome provides insights into benthic adaptation and frequent molting. Nat Commun. 10(1):356. doi: 10.1038/s41467-018-08197-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhong L, Bellemer A, Yan H, Honjo K, Robertson J, Hwang RY, Pitt GS, Tracey WD. 2012. Thermosensory and nonthermosensory isoforms of Drosophila melanogaster TRPA1 reveal heat-sensor domains of a ThermoTRP channel. Cell Rep. 1(1):43–55. doi: 10.1016/j.celrep.2011.11.002. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
A male nymph and adult female from the same set of oothecae were vouchered at Purdue Entomological Research Collection (PERC 0154978 and PERC 0154979). The entire individual used for sequencing was destroyed during sampling. Raw reads and our assembly are available under BioProject PRJNA1036567. No new code was written for this study, but scripts used to run existing programs are found at https://github.com/caterpillar-coevolution/Tsinensis_genome_V1 alongside annotation files.
Supplemental material available at G3 online.




