Biological samples |
|
Human plasma |
This paper |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Acetonitrile |
Fisher Chemical |
Cat#75-05-8 |
Formic Acid |
Sigma-Aldrich |
Cat#64-18-6 |
Ammonium Bicarbonate |
Sigma-Aldrich |
Cat#1066-33-7 |
Dithiothreitol |
Sigma-Aldrich |
Cat#3483-12-3 |
Iodoacetamide |
Sigma-Aldrich |
Cat#144-48-9 |
Trypsin |
Promega |
Cat#9002-07-7 |
Acetone |
Sigma-Aldrich |
Cat#67-64-1 |
Ultra-pure water |
This paper |
N/A |
Formic Acid |
Fisher Chemical |
Cat#64-18-6 |
Methanol |
Fisher Chemical |
Cat#67-56-1 |
|
Deposited data |
|
Mass spectrometry proteomics data |
This paper |
https://proteomecentral.proteomexchange.org; ID:PXD050303 |
Untargeted metabolomic data |
This paper |
https://www.ebi.ac.uk/metabolights/MTBLS9664 |
|
Software and algorithms |
|
GraphPad Prism 9.0 |
GraphPad Software, Inc. |
https://www.graphpad.com |
R |
https://cran.r-project.org |
V4.3.1 |
Biorender |
Biorender |
https://www.biorender.com/ |
Proteome Discoverer |
Thermo Fisher Scientific (USA) |
RRID:SCR_014477
|
UniProt |
https://www.uniprot.org/ |
RRID:SCR_002380
|
MetaboAnalyst |
https://www.metaboanalyst.ca/ |
RRID:SCR_015539
|
BiocManager package |
https://bioconductor.org/ |
N/A |
STRING |
http://string.embl.de/ |
RRID:SCR_005223
|
MS-DIAL |
http://prime.psc.riken.jp/compms/msdial/main.html |
RRID:SCR_023076
|
IBM SPSS Statistics |
https://www.ibm.com/products/spss-statistics |
RRID:SCR_016479
|
HMDB |
http://www.hmdb.ca |
RRID:SCR_007712
|
|
Other |
|
Vortex Mixer |
Changzhou Enpei Instrument Manufacturing Co., Ltd |
NP-30S |
Mini Centrifuge |
SCILOGEX |
D1008E |
High-Speed Refrigerated Centrifuge |
SIGMA |
1-15K |
Analytical Balance |
Mettler Toledo Instruments (Shanghai) Co., Ltd |
AL104 |
Vacuum Centrifugal Concentrator |
Thermo Fisher Scientific (USA) |
SPD121P-230 |
Electrospray Ionization Hybrid Ion Trap-Orbitrap Mass Spectrometer |
Thermo Fisher Scientific (USA) |
Orbitrap Fusion™ Lumos™ Tribrid™ Mass Spectrometer |
High-Performance Liquid Chromatograph |
Thermo Fisher Scientific (USA) |
Vanquish |
High-Performance Liquid Chromatograph |
Thermo Fisher Scientific (USA) |
Ultimate 3000 |
Mass Spectrometer |
AB SCIEX™ |
TripleTOF5600+ |
Vacuum Centrifugal Concentrator |
Eppendorf (Germany) |
Concentrator plus |
Analytical Balance |
Sartorius (Switzerland) |
Sartorius BP211d |
Low-Temperature High-Speed Centrifuge |
Beckman Coulter (USA) |
Microfuge 22R Centrifuge |
Mini Centrifuge |
Scilogex (USA) |
D1008 |
Vortex Mixer |
Scilogex (USA) |
MX-S |