Abstract
Introduction: Diabetic retinopathy (DR), a microvascular complication of type 2 diabetes (T2D), results from complex interactions of genetic and environmental factors. Vascular endothelial growth factor (VEGF) and mouse model minute 2 (MDM2)are upregulated in the retina due to diabetes, which increases the risk of DR. VEGFA and MDM2 genetic variations can influence DR risk. The present case-control study was conducted to evaluate the association of VEGFA and MDM2 promoter variants with DR in a population from Punjab, Northwest India.
Methods: A total of 414 DR patients, 425 T2D patients without DR, and 402 healthy controls were screened for VEGFA -2578C/A (rs699947), VEGFA -2549I/D (rs35569394), VEGFA -7C/T (rs25648), and MDM2 rs3730485 polymorphisms using polymerase chain reaction (PCR)-based methods.
Results: VEGFA -2549 I allele (OR = 1.35 (1.00-1.81), p = 0.043) and II genotype (OR = 1.78 (1.00-3.15), p = 0.047) were significantly associated with increased risk of DR. VEGFA -7 CT genotype conferred reduced risk of DR (OR = 0.28 (0.20-0.38); p = <0.001). VEGFA -2578 and MDM2 rs3730485 showed no significant association with DR. A-I-T (OR = 0.30 (0.20-0.44); p = <0.001) and C-D-T (OR = 0.33 (0.16-0.65); p = 0.002) haplotypes of rs699947-rs35569394-rs25648 polymorphisms showed decreased risk of DR.
Conclusions: I allele and II genotype of VEGFA -2549, CT genotype of VEGFA -7, and C-I-C and A-D-C haplotypes of rs699947-rs35569394-rs25648 polymorphisms were significantly associated with DR risk in a Northwest Indian population. This is the first study worldwide to report DR risk with VEGFA promoter variants together.
Keywords: genetic opthalmology, polymorphism, mcp-1, capn10, human genetics, diabetic retinopathy, genetics
Introduction
Diabetes mellitus (DM) is a group of metabolic disorders characterized by high blood glucose levels and an increased risk of developing a number of serious health problems, resulting in higher medical care costs, reduced quality of life, and increased mortality [1]. Diabetic retinopathy (DR) is one of the major microvascular complications associated with chronic hyperglycemia and the leading cause of preventable blindness worldwide [2]. Type 2 diabetes (T2D) represents more than 90% of the whole diabetic population in the world [3] and is responsible for 9% of global mortality corresponding to four million deaths per year. According to the International Diabetes Federation (IDF), there are nearly 65.1 million diabetic individuals in India, and the number is further expected to reach 109 million by the year 2035 [4]. Despite the documented increase in the prevalence of diabetes across the globe, still there is a scarcity of data on the prevalence and severity of DR [5]. There are very limited epidemiological studies emphasizing the prevalence of DR in rural and urban populations in India [6,7]. The overall prevalence of DR was reported to be around 38.3% in T2D cases in India [8]. Diabetes-induced blindness in working adults in India is expected to increase from 4.2 million in 2020 to over six million by 2030 [9]. DR begins with microvascular complications in the photoreceptor cells of the retina and is characterized by increased vascular permeability, progressive vascular occlusion, and neovascularization (NV), which results in the degeneration of retinal cells/tissues that finally affects vision [10]. NV is the process of forming new vasculature by vasculogenesis and angiogenesis [11]. The initial factors and determinants of ocular NV are hypoxia and oxidative stress in the outer retina [12]. Hyperglycemia induces hypoxia in the retina of diabetic individuals. Hypoxia stimulates the expression of factors such as vascular endothelial growth factor (VEGF) and mouse model minute 2 (MDM2) [13].
VEGF is a multifunctional cytokine that promotes angiogenesis and vascular permeability [14,15]. Under physiological conditions, VEGF is expressed at low levels in the eye [16]. Under pathological circumstances, the expression of VEGF is upregulated, and its overexpression promotes vessel endothelial cell proliferation, migration, tube formation, and sprouting, serving as a contributing factor for DR [17]. VEGF is also considered a primary initiator of proliferative DR (PDR) and a potential mediator of non-PDR (NPDR) [18]. Hence, the VEGF gene and its polymorphic variants may play crucial roles in DR, characterized by impaired vascular permeability and neovascularization [19]. However, the association between VEGF gene polymorphisms and the susceptibility to DR, PDR, and NPDR has not been completely established [15-19]. Human VEGFA (Gene ID: 7422) is located on 6p21.1, spans over 16 kb, and consists of nine exons (https://www.ncbi.nlm.nih.gov/gene/7422). It is reported to be highly polymorphic in the promoter region, 5′ untranslated region (UTR), and 3′ UTR [20]. There are reports on the association of these genetic variations with altered serum and urine VEGF levels [20,21]. VEGFA -2578 C/A (rs699947), VEGFA -2549 I/D (rs35569394), and VEGFA -7 C/T (rs25648) polymorphisms have been implicated in a number of diseases with angiogenic basis; hence, they are polymorphisms of particular interest [22,23].
The MDM2 gene encodes the MDM2 homolog protein, which is a primary negative regulator of p53 [24]. The tumor suppressor protein p53 controls many important cellular events, including apoptosis and cell proliferation [25]. It has been reported that p53 is active in the absence of MDM2, triggering apoptosis or profound inhibition of cell proliferation [26]. Meanwhile, elevated MDM2expression causes persistent cell growth with significant DNA damage, which supports tumorigenesis due to loss of p53 control [27]. Under hypoxic conditions, MDM2 is overexpressed and activates hypoxia-inducible factor 1 (HIF1) in a p53-independent pathway, and HIF1 upregulates VEGF [28-30]. In addition, MDM2 directly interacts with and stabilizes VEGF mRNA and increases its translation, which is one of the main vasoactive gene products causing NV [31]. A previous study reported that, in the diabetic state, the deletion of MDM2 causes activation of endothelial p53, which reduces vasodilatation and angiogenesis, reducing the risk of PDR [32]. MDM2 rs3730485 is an insertion/deletion polymorphism of 40 bps in the promoter P1, and the deletion allele has been shown to reduce transcription [33-35].
The interplay between MDM2, p53, HIF1, and VEGF might be one of the key factors for the development of DR. The present study is designed to detect any association of VEGFA -2578C/A (rs699947), VEGFA -2549I/D (rs35569394), VEGFA -7C/T (rs25648), and MDM2 rs3730485 promoter polymorphisms with the DR in a population from Punjab, Northwest India. These four polymorphisms are present in the promoter region, and other polymorphisms present in that area are mostly in linkage disequilibrium with the selected four. Thus, evaluating these four could also shine a light on the ones not included in the study. To the best of our knowledge, there has been no previous reported study worldwide on the association of MDM2 rs3730485 polymorphism with the DR. This is the first study worldwide to investigate the association of VEGFA rs699947, rs35569394, and rs25648 polymorphisms together with DR.
Materials and methods
Study subjects
In the present study, a total of 414 unrelated DR patients, 425 unrelated T2D patients without DR, and 402 unrelated age-matched healthy controls (CN) from Punjab, Northwest India, were included. The sample size was estimated using the power of study analysis, explained in the statistical analysis below. T2D was defined according to the American Diabetes Association diagnostic criteria [36]. Type 1 diabetic patients and T2D patients with other metabolic complications were excluded from the study. DR cases were diagnosed by ophthalmologists at Dr. Sohan Singh Eye Hospital, Amritsar, Punjab, India, based on a comprehensive ophthalmological examination, including fundus examination and fundus photography based on three 45° field tests per eye every year. Retinopathy was diagnosed according to the Early Treatment Diabetic Retinopathy Study (ETDRS) criteria: the presence of microaneurysms, hemorrhages, cotton wool spots, intra-retinal microvascular abnormalities, hard exudates, venous beading, and new vessels [37]. The DR patients were further categorized into 256 non-proliferative diabetic retinopathy (NPDR) patients and 158 proliferative diabetic retinopathy (PDR) patients. Controls were randomly selected on the basis of fasting blood sugar (FBS) and random blood sugar (RBS) levels with no previous history of diabetes and were ethnicity-matched with patients. Individuals with a family history of diabetes in first-degree relatives or any other systemic complications were not included in the control group. A written informed consent was obtained from all the study subjects. A 5-mL intravenous peripheral blood sample from each subject was collected in ethylenediaminetetraacetic acid (EDTA)-coated vials. The study was approved by the Institutional Ethics Committee of Guru Nanak Dev University, Amritsar, Punjab, India (Letter No. 573/HG, Dated- 29/03/2018).
Genetic analysis
Genomic DNA was extracted from blood using the salt precipitation method with some modifications [38]. The purity and quantity of DNA samples were checked on ethidium bromide-stained 1% agarose gel. Genotyping of VEGFA -2578 C/A polymorphism was performed by the PCR-RFLP method, whereas VEGFA -7 C/T polymorphism was genotyped using the amplification refractory mutation system (ARMS)-polymerase chain reaction (PCR). VEGFA -2549 I/D and MDM2 rs3730485 I/D polymorphisms were genotyped using direct PCR. The details of primers, reaction conditions, and other details of polymorphisms are given in Table 1. The PCR results were checked using agarose gel electrophoresis. To ensure genotyping accuracy, positive and negative controls were used in every batch of reactions. The PCR results were validated by Sanger sequencing of 10% randomly selected samples (Figures 1, 2).
Table 1. Details of VEGFA polymorphisms and genotyping conditions used for screening.
| Polymorphism (RefSNP) | Location | Genotyping method | Annealing temperature | Restriction enzyme used | Allele and Fragment size (bp) | Primer reference |
| VEGFA−2578C/A (rs699947) | Promoter | PCR-RFLP | 59°C | BglII | C- 459 | [39] |
| A- 247, 212 | ||||||
| VEGFA −2549I/D (rs35569394) | Promoter | Direct PCR | 55°C | - | D- 211 | [40] |
| I- 229 | ||||||
| VEGFA −7C/T (rs25648) | 5′ UTR | ARMS-PCR | 60°C | - | Control- 425 | [41] |
| C and T- 183 | ||||||
| MDM2 (rs3730485) | Promoter | Direct PCR | 58°C | - | I- 287 | [42] |
| D-247 |
Figure 1. Part of electropherograms (forward strand) showing CC, CA, and AA genotypes of VEGFA rs699947 (a) polymorphism. Part of electropherograms (forward strand) showing C- and T-specific primer sequencing results of VEGFA rs25648 (b) polymorphism.
Figure 2. Part of electropherograms (forward strand) showing II, ID, and DD genotypes of VEGFA rs35569394 (a) and MDM2 rs3730485 (b) polymorphisms.
Statistical analysis
Data were analyzed using the Statistical Product and Service Solutions (SPSS, version 16.0; SPSS Inc., Chicago, IL). Power analysis was done using the online CaTS-GAS power calculator (https://csg.sph.umich.edu/abecasis/cats/gas_power_calculator/) with the following parameters: additive disease model, population risk of 13% for T2D, and minor allele frequency (MAF) of 46.3% for VEGFA -2578 C/A, 46.1% for VEGFA -2549 I/D, 14.3% for VEGFA -7 C/T, and 23% for MDM2 rs3730485 at p=0.05. The continuous variables were represented as means ± standard deviations (SD). The Hardy-Weinberg equilibrium (HWE), allele frequencies, genotype frequencies, and genotype-genotype combinations were analyzed using the c2 test and odds ratio (OR) with 95% CI. The Haplotype analysis was done using the online SNPStats web tool (https://www.snpstats.net/start.htm) [43]. Lewontin’s standardized disequilibrium coefficient (D′) and correlation coefficient (r2) were calculated using SHEsis software [44]. The p-value for the level of significance was set to be less than 0.05 in all analyses.
Results
Genotype and allele analysis
Genotype frequencies of all polymorphisms studied in the present study were in agreement with HWE (p > 0.05) in healthy controls. The allele distribution, genotype distribution, and genetic model analyses in DR, T2D, and controls have been given in Tables 2, 3.
Table 2. Distribution of genotype and allele frequencies of VEGFA and MDM2 polymorphisms in total subjects, female, male, NPDR, and PDR groups.
The data have been represented as n (number), %, OR: odds ratio, and p-value. p-value < 0.05 was considered significant. Significant p-values are displayed in bold.
CN: Healthy Controls, DR: Diabetic Retinopathy, HWE: Hardy-Weinberg Equilibrium, MDM2: Mouse Model Minute 2, NPDR: Non-Proliferative Diabetic Retinopathy, PDR: Proliferative Diabetic Retinopathy, T2D: Type 2 Diabetes, VEGFA: Vascular Endothelial Growth Factor
| Total Samples | |||||||||||||
| DR (n= 414) | T2D (n=425) | CN (n= 402) | DR vs. CN | T2D vs. CN | DR vs. T2D | ||||||||
| OR (95% CI) | p-value | OR (95% CI) | p-value | OR (95% CI) | p-value | ||||||||
| VEGFA -2578 C/A (rs699947) | |||||||||||||
| Genotype | |||||||||||||
| CC | 125 (30.2) | 116 (27.3) | 124 (30.8) | Reference | Reference | Reference | |||||||
| CA | 199 (48.1) | 213 (50.1) | 184 (45.8) | 1.07 (0.78-1.48) | 0.666 | 1.24 (0.90-1.71) | 0.193 | 0.87 (0.63-1.19) | 0.379 | ||||
| AA | 90 (21.7) | 96 (22.6) | 94 (23.4) | 0.95 (0.65-1.39) | 0.791 | 1.09 (0.75-1.60) | 0.652 | 0.87 (0.59-1.28) | 0.476 | ||||
| Allele | |||||||||||||
| C | 449 (54.2) | 445 (52.4) | 432 (53.7) | Reference | Reference | Reference | |||||||
| A | 379 (45.8) | 405 (47.6) | 372 (46.3) | 0.98 (0.81-1.19) | 0.841 | 1.06 (0.87-1.28) | 0.575 | 0.93 (0.77-1.12) | 0.442 | ||||
| HWE | p=0.519 | p=0.925 | p=0.111 | ||||||||||
| VEGFA -2549 I/D (rs35569394) | |||||||||||||
| Genotype | |||||||||||||
| DD | 117 (28.3) | 109 (25.7) | 124 (30.8) | Reference | Reference | Reference | |||||||
| ID | 202 (48.8) | 216 (50.8) | 186 (46.3) | 1.15 (0.83-1.59) | 0.392 | 1.32 (0.96-1.83) | 0.092 | 0.87 (0.63-1.20) | 0.404 | ||||
| II | 95 (22.9) | 100 (23.5) | 92 (22.9) | 1.09 (0.75-1.60) | 0.644 | 1.24 (0.84-1.81) | 0.277 | 0.89 (0.60-1.30) | 0.532 | ||||
| Allele | |||||||||||||
| D | 436 (52.7) | 434 (51.1) | 434 (54) | Reference | Reference | Reference | |||||||
| I | 392 (47.3) | 416 (48.9) | 370 (46) | 1.05 (0.87-1.28) | 0.592 | 1.12 (0.93-1.36) | 0.235 | 0.94 (0.77-1.14) | 0.512 | ||||
| HWE | p=0.663 | p=0.727 | p=0.168 | ||||||||||
| VEGFA -7 C/T (rs25648) | |||||||||||||
| Genotype | |||||||||||||
| CC | 334 (80.7) | 224 (52.7) | 297 (73.9) | Reference | Reference | Reference | |||||||
| CT | 78 (18.8) | 189 (44.5) | 101 (25.1) | 0.69 (0.49-0.96) | 0.028 | 2.48 (1.84-3.34) | <0.001 | 0.28 (0.20-0.38) | <0.001 | ||||
| TT | 2 (0.5) | 12 (2.8) | 4 (1.0) | 0.44 (0.08-2.45) | 0.351 | 3.98 (1.27-12.5) | 0.018 | 0.11 (0.02-0.50) | 0.004 | ||||
| Allele | |||||||||||||
| C | 746 (90.1) | 637 (74.9) | 695 (86.4) | Reference | Reference | Reference | |||||||
| T | 82 (9.9) | 213 (25.1) | 109 (13.6) | 0.70 (0.52-0.95) | 0.022 | 2.13 (1.65-2.75) | <0.001 | 0.33 (0.25-0.43) | <0.001 | ||||
| HWE | p=0.256 | p=0.001 | p=0.149 | ||||||||||
| MDM2 (rs3730485) | |||||||||||||
| Genotype | |||||||||||||
| CC | 251 (60.6) | 241 (56.7) | 234 (58.2) | Reference | Reference | Reference | |||||||
| CT | 136 (32.9) | 161 (37.9) | 151 (37.6) | 0.84 (0.63-1.12) | 0.241 | 1.04 (0.78-1.38) | 0.812 | 0.81 (0.61-1.08) | 0.155 | ||||
| TT | 27 (6.5) | 23 (5.4) | 17 (4.2) | 1.48 (0.79-2.79) | 0.223 | 1.31 (0.68-2.52) | 0.412 | 1.13 (0.63-2.02) | 0.688 | ||||
| Allele | |||||||||||||
| C | 638 (77.1) | 643 (75.6) | 619 (77) | Reference | Reference | Reference | |||||||
| T | 190 (22.9) | 207 (24.4) | 185 (23) | 0.99 (0.79-1.26) | 0.976 | 1.08 (0.86-1.35) | 0.521 | 0.93 (0.74-1.16) | 0.498 | ||||
| HWE | p=0.148 | p=0.337 | p=0.228 | ||||||||||
| Female Group | |||||||||||||
| DR (n= 147) | T2D (n=190) | CN (n= 234) | DR vs. CN | T2D vs. CN | DR vs. T2D | ||||||||
| OR (95% CI) | p-value | OR (95% CI) | p-value | OR (95% CI) | p-value | ||||||||
| VEGFA -2578 C/A (rs699947) | |||||||||||||
| Genotype | |||||||||||||
| CC | 45 (30.6) | 56 (29.5) | 77 (32.9) | Reference | Reference | Reference | |||||||
| CA | 65 (44.2) | 89 (46.8) | 106 (45.3) | 1.05 (0.65-1.70) | 0.844 | 1.15 (0.74-1.80) | 0.527 | 0.91 (0.55-1.51) | 0.711 | ||||
| AA | 37 (25.2) | 45 (23.7) | 51 (21.8) | 1.24 (0.71-2.17) | 0.450 | 1.21 (0.72-2.06) | 0.473 | 1.02 (0.57-1.84) | 0.939 | ||||
| Allele | |||||||||||||
| C | 155 (52.7) | 201 (52.9) | 260 (55.6) | Reference | Reference | Reference | |||||||
| A | 139 (47.3) | 179 (47.1) | 208 (44.4) | 1.12 (0.84-1.50) | 0.445 | 1.11 (0.85-1.46) | 0.439 | 1.00 (0.74-1.37) | 0.964 | ||||
| HWE | p=0.171 | p=0.408 | p=0.206 | ||||||||||
| VEGFA -2549 I/D (rs35569394) | |||||||||||||
| Genotype | |||||||||||||
| DD | 39 (27.9) | 52 (27.4) | 78 (33.3) | Reference | Reference | Reference | |||||||
| ID | 67 (45.6) | 93 (48.9) | 110 (47) | 1.22 (0.75-1.99) | 0.430 | 1.27 (0.81-1.98) | 0.297 | 0.96 (0.57-1.62) | 0.880 | ||||
| II | 41 (27.9) | 45 (23.7) | 46 (19.7) | 1.78 (1.00-3.15) | 0.047 | 1.47 (0.85-2.52) | 0.164 | 1.21 (0.67-2.20) | 0.520 | ||||
| Allele | |||||||||||||
| D | 145 (49.3) | 197 (51.8) | 266 (56.8) | Reference | Reference | Reference | |||||||
| I | 149 (50.7) | 183 (48.2) | 202 (43.2) | 1.35 (1.00-1.81) | 0.043 | 1.22 (0.93-1.61) | 0.146 | 1.11 (0.82-1.50) | 0.516 | ||||
| HWE | p= 0.285 | p= 0.786 | p= 0.521 | ||||||||||
| VEGFA -7 C/T (rs25648) | |||||||||||||
| Genotype | |||||||||||||
| CC | 117 (79.6) | 99 (52.1) | 175 (74.7) | Reference | Reference | Reference | |||||||
| CT | 29 (19.7) | 85 (44.7) | 57 (24.4) | 0.76 (0.46-1.26) | 0.289 | 2.64 (1.74-4.00) | <0.001 | 0.29 (0.18-0.48) | <0.001 | ||||
| TT | 1 (0.7) | 6 (3.2) | 2 (0.9) | 0.75 (0.07-8.34) | 0.813 | 5.30 (1.05-26.78) | 0.043 | 0.14 (0.02-1.19) | 0.072 | ||||
| Allele | |||||||||||||
| C | 263 (89.5) | 283 (74.5) | 407 (87) | Reference | Reference | Reference | |||||||
| T | 31 (10.5) | 97 (25.5) | 61 (13) | 0.79 (0.50-1.24) | 0.305 | 2.29 (1.60-3.36) | <0.001 | 0.34 (0.22-0.53) | <0.001 | ||||
| HWE | p=0.579 | p=0.015 | p=0.255 | ||||||||||
| MDM2 (rs3730485) | |||||||||||||
| Genotype | |||||||||||||
| CC | 93 (63.2) | 105 (55.3) | 140 (59.8) | Reference | Reference | Reference | |||||||
| CT | 47 (32) | 72 (37.9) | 85 (36.3) | 0.83 (0.53-1.3) | 0.416 | 1.13 (0.75-1.69) | 0.554 | 0.74 (0.46-1.17) | 0.195 | ||||
| TT | 7 (4.8) | 13 (6.8) | 9 (3.9) | 1.17 (0.42-3.25) | 0.762 | 1.93 (0.79-4.67) | 0.147 | 0.61 (0.23-1.59) | 0.310 | ||||
| Allele | |||||||||||||
| C | 233 (79.3) | 282 (74.2) | 365 (78) | Reference | Reference | Reference | |||||||
| T | 61 (20.7) | 98 (25.8) | 103 (22) | 0.93 (0.63-1.33) | 0.680 | 1.23 (0.9-1.69) | 0.198 | 0.75 (0.52-1.08) | 0.127 | ||||
| HWE | p=0.736 | p=0.891 | p=0.374 | ||||||||||
| Male Group | |||||||||||||
| DR (n=267) | T2D (n= 235) | CN (n= 168) | DR vs. CN | T2D vs. CN | DR vs. T2D | ||||||||
| OR (95% CI) | p-value | OR (95% CI) | p-value | OR (95% CI) | p-value | ||||||||
| VEGFA -2578 C/A (rs699947) | |||||||||||||
| Genotype | |||||||||||||
| CC | 80 (30) | 60 (25.5) | 47(28) | Reference | Reference | Reference | |||||||
| CA | 134 (50.2) | 124 (52.8) | 78 (46.4) | 1.00 (0.64-1.59) | 0.968 | 1.25 (0.77-2.00) | 0.366 | 0.81 (0.54-1.23) | 0.320 | ||||
| AA | 53 (19.8) | 51 (21.7) | 43 (25.6) | 0.72 (0.42-1.24) | 0.241 | 0.93 (0.53-1.62) | 0.796 | 0.78 (0.47-1.30) | 0.338 | ||||
| Allele | |||||||||||||
| C | 294 (55.1) | 244 (51.9) | 172 (51.2) | Reference | Reference | Reference | |||||||
| A | 240 (44.9) | 226 (48.1) | 164 (48.8) | 0.86 (0.65-1.13) | 0.266 | 0.97 (0.73-1.29) | 0.839 | 0.88 (0.69-1.13) | 0.319 | ||||
| HWE | p=0.818 | p=0.383 | p=0.358 | ||||||||||
| VEGFA -2549 D/I (rs35569394) | |||||||||||||
| Genotype | |||||||||||||
| DD | 78 (29.9) | 57 (24.3) | 46 (27.4) | Reference | Reference | Reference | |||||||
| ID | 135 (50.6) | 123 (52.3) | 76 (45.2) | 1.05 (0.66-1.66) | 0.843 | 1.31 (0.81-2.12) | 0.278 | 0.80 (0.53-1.22) | 0.303 | ||||
| II | 54 (20.2) | 55 (23.4) | 46 (27.4) | 0.69 (0.41-1.18) | 0.179 | 0.96 (0.56-1.68) | 0.899 | 0.72 (0.43-1.19) | 0.200 | ||||
| Allele | |||||||||||||
| D | 291 (54.5) | 237 (50.4) | 168 (50) | Reference | Reference | Reference | |||||||
| I | 243 (45.5) | 233 (49.6) | 168 (50) | 0.84 (0.64-1.10) | 0.196 | 0.98 (0.74-1.30) | 0.905 | 0.85 (0.66-1.06) | 0.198 | ||||
| HWE | p=0.750 | p=0.472 | p=0.217 | ||||||||||
| VEGFA -7 C/T (rs25648) | |||||||||||||
| Genotype | |||||||||||||
| CC | 217 (81.2) | 125 (53.2) | 122 (72.6) | Reference | Reference | Reference | |||||||
| CT | 49 (18.4) | 104 (44.2) | 44 (26.2) | 0.63 (0.39-1.00) | 0.048 | 2.31 (1.50-3.55) | <0.001 | 0.27 (0.18-0.41) | <0.001 | ||||
| TT | 1 (0.4) | 6 (2.6) | 2 (1.2) | 0.28 (0.03-3.13) | 0.302 | 2.93 (0.58-14.79) | 0.194 | 0.10 (0.01-0.81) | 0.031 | ||||
| Allele | |||||||||||||
| C | 483 (90.4) | 354 (75.3) | 288 (85.7) | Reference | Reference | Reference | |||||||
| T | 51 (9.6) | 116 (24.7) | 48 (14.3) | 0.63 (0.42-0.96) | 0.033 | 2.0 (1.36-2.85) | <0.001 | 0.32 (0.23-0.46) | <0.001 | ||||
| HWE | p=0.309 | p=0.004 | p=0.368 | ||||||||||
| MDM2 (rs3730485) | |||||||||||||
| Genotype | |||||||||||||
| CC | 158 (59.2) | 136 (57.9) | 94 (56) | Reference | Reference | Reference | |||||||
| CT | 89 (33.3) | 89 (37.9) | 66 (39.3) | 0.80 (0.53-1.21) | 0.290 | 0.93 (0.62-1.41) | 0.738 | 0.86 (0.59-1.25) | 0.430 | ||||
| TT | 20 (7.5) | 10 (4.2) | 8 (4.7) | 1.49 (0.63-3.51) | 0.365 | 0.86 (0.33-2.27) | 0.767 | 1.72 (0.78-3.80) | 0.179 | ||||
| Allele | |||||||||||||
| C | 405 (75.8) | 361 (76.8) | 254 (75.6) | Reference | Reference | Reference | |||||||
| T | 129 (24.2) | 109 (23.2) | 82 (24.4) | 0.99 (0.72-1.36) | 0.934 | 0.94 (0.67-1.30) | 0.690 | 1.05 (0.79-1.41) | 0.720 | ||||
| HWE | p=0.140 | p=0.334 | p=0.402 | ||||||||||
| NPDR and PDR groups | |||||||||||||
| NPDR (n= 256) | PDR (n= 158) | T2D (n= 425) | NPDR vs. T2D | PDR vs. T2D | PDR vs. NPDR | ||||||||
| OR (95% CI) | p-value | OR (95% CI) | p-value | OR (95%CI) | p-value | ||||||||
| VEGFA -2578 C/A (rs699947) | |||||||||||||
| Genotype | |||||||||||||
| CC | 74 (28.9) | 51 (32.3) | 116 (27.3) | Reference | Reference | Reference | |||||||
| CA | 121 (47.3) | 78 (49.4) | 213 (50.1) | 0.89 (0.62-1.29) | 0.536 | 0.83 (0.55-1.27) | 0.393 | 0.94 (0.59-1.48) | 0.774 | ||||
| AA | 61 (23.8) | 29 (18.4) | 96 (22.6) | 1.00 (0.65-1.54) | 0.986 | 0.69 (0.40-1.17) | 0.165 | 0.69 (0.39-1.22) | 0.200 | ||||
| Allele | |||||||||||||
| C | 269 (52.5) | 180 (57.0) | 445 (52.4) | Reference | Reference | Reference | |||||||
| A | 243 (47.5) | 136 (43.0) | 405 (47.6) | 0.99 (0.80-1.24) | 0.947 | 0.83 (0.64-1.08) | 0.161 | 0.84 (0.63-1.11) | 0.215 | ||||
| HWE | p=0.403 | p=0.931 | p=0.925 | ||||||||||
| VEGFA -2549 D/I (rs35569394) | |||||||||||||
| Genotype | |||||||||||||
| DD | 66 (25.8) | 51 (32.3) | 109 (25.7) | Reference | Reference | Reference | |||||||
| ID | 126 (49.2) | 76 (48.1) | 186 (50.8) | 1.12 (0.76-1.64) | 0.563 | 0.87 (0.57-1.34) | 0.533 | 0.78 (0.49-1.24) | 0.295 | ||||
| II | 64 (25) | 31 (19.6) | 100 (23.5) | 1.06 (0.68-1.64) | 0.804 | 0.66 (0.39-1.12) | 0.123 | 0.63 (0.36-1.10) | 0.104 | ||||
| Allele | |||||||||||||
| D | 258 (50.4) | 178 (56.3) | 434 (51.1) | Reference | Reference | Reference | |||||||
| I | 254 (49.6) | 138 (43.7) | 416 (48.9) | 1.03 (0.82-1.28) | 0.811 | 0.81 (0.62-1.05) | 0.110 | 0.79 (0.59-1.04) | 0.097 | ||||
| HWE | p=0.803 | p=0.779 | p=0.727 | ||||||||||
| VEGFA -7 C/T (rs25648) | |||||||||||||
| Genotype | |||||||||||||
| CC | 205 (80.1) | 129 (81.6) | 224 (52.7) | Reference | Reference | Reference | |||||||
| CT | 50 (19.5) | 28 (17.7) | 189 (44.5) | 0.29 (0.20-0.42) | <0.001 | 0.26 (0.16-0.40) | <0.001 | 0.89 (0.53-1.49) | 0.656 | ||||
| TT | 1 (0.4) | 1 (0.6) | 12 (2.8) | 0.09 (0.01-0.71) | 0.022 | 0.14 (0.02-1.13) | 0.065 | 1.59 (0.10-25.6) | 0.744 | ||||
| Allele | |||||||||||||
| C | 460 (89.8) | 286 (90.5) | 637 (74.9) | Reference | Reference | Reference | |||||||
| T | 52 (10.2) | 30 (9.5) | 213 (25.1) | 0.34 (0.24-0.47) | <0.001 | 0.31 (0.21-0.47) | <0.001 | 0.93 (0.58-1.49) | 0.757 | ||||
| HWE | p=0.261 | p=0.695 | p=0.001 | ||||||||||
| MDM2 (rs3730485) | |||||||||||||
| Genotype | |||||||||||||
| CC | 153 (58.8) | 98 (62) | 241 (56.7) | Reference | Reference | Reference | |||||||
| CT | 86 (34.6) | 50 (31.6) | 161 (37.9) | 0.88 (0.63-1.22) | 0.447 | 0.76 (0.51-1.13) | 0.181 | 0.87 (0.56-1.33) | 0.515 | ||||
| TT | 17 (6.6) | 10 (6.4) | 23 (5.4) | 1.16 (0.60-2.25) | 0.651 | 1.06 (0.49-2.33) | 0.866 | 0.92 (0.40-2.09) | 0.839 | ||||
| Allele | |||||||||||||
| C | 396 (76.2) | 246 (77.8) | 643 (75.6) | Reference | Reference | Reference | |||||||
| T | 124 (23.8) | 70 (22.2) | 207 (24.4) | 0.97 (0.75-1.26) | 0.832 | 0.88 (0.65-1.20) | 0.433 | 0.91 (0.65-1.27) | 0.574 | ||||
| HWE | p=0.449 | p=0.299 | p=0.337 | ||||||||||
Table 3. Analyses of VEGFA and MDM2 polymorphisms using different genetic models in total samples, female group, and male group.
The data have been represented as OR: odds ratio and p-value. p-value < 0.05 was considered significant. Significant p-values are displayed in bold.
CN: Healthy Controls, DR: Diabetic Retinopathy, HWE: Hardy-Weinberg Equilibrium, MDM2: Mouse Model Minute 2, T2D: Type 2 Diabetes, VEGFA: Vascular Endothelial Growth Factor
| Total Samples | |||||||
| DR vs. CN | T2D vs. CN | DR vs. T2D | |||||
| Variant | Models | OR (95% CI) | p | OR (95% CI) | p | OR (95% CI) | p |
| VEGFA -2578 C/A (rs699947) | Dominant Model | 1.03 | 0.840 | 1.19 | 0.261 | 0.87 | 0.354 |
| (CA + AA vs. CC) | (0.77-1.39) | (0.88-1.60) | (0.64-1.17) | ||||
| Heterozygous Model | 0.91 | 0.511 | 0.84 | 0.211 | 1.09 | 0.553 | |
| (CC + AA vs.CA) | (0.69-1.20) | (0.64-1.10) | (0.83-1.42) | ||||
| Recessive Model | 0.91 | 0.574 | 0.96 | 0.786 | 0.95 | 0.767 | |
| (AA vs. CC + CA) | (0.66-1.26) | (0.69-1.32) | (0.69-1.32) | ||||
| VEGFA -2549 I/D (rs35569394) | Dominant Model | 1.13 | 0.419 | 1.29 | 0.097 | 0.88 | 0.394 |
| (ID + II vs. DD) | (0.84-1.53) | (0.95-1.75) | (0.65-1.19) | ||||
| Heterozygous Model | 0.90 | 0.471 | 0.83 | 0.190 | 1.08 | 0.556 | |
| (DD + II vs.ID) | (0.69-1.19) | (0.63-1.09) | (0.83-1.42) | ||||
| Recessive Model | 1.00 | 0.983 | 1.04 | 0.827 | 0.97 | 0.842 | |
| (II vs. DD + ID) | (0.72-1.39) | (0.75-1.43) | (0.70-1.33) | ||||
| VEGFA -7 C/T (rs25648) | Dominant Model | 0.68 | 0.021 | 2.54 | <0.001 | 0.27 | <0.001 |
| (CT + TT vs. CC) | (0.49-0.94) | (1.89-3.40) | (0.20-0.36) | ||||
| Heterozygous Model | 1.45 | 0.031 | 0.42 | <0.001 | 3.45 | <0.001 | |
| (CC + TT vs. CT) | (1.04-2.02) | (0.31-0.56) | (2.53-4.71) | ||||
| Recessive Model | 0.48 | 0.402 | 2.89 | 0.068 | 0.17 | 0.020 | |
| (TT vs. CC + CT) | (0.09-2.65) | (0.92-9.04) | (0.04-0.75) | ||||
| MDM2 (rs3730485) | Dominant Model | 0.91 | 0.482 | 1.06 | 0.662 | 0.85 | 0.249 |
| (ID + DD vs. II) | (0.68-1.20) | (0.81-1.40) | (0.65-1.12) | ||||
| Heterozygous Model | 1.23 | 0.159 | 0.99 | 0.924 | 1.25 | 0.128 | |
| (II + DD vs. ID) | (0.92-1.64) | (0.74-1.31) | (0.94-1.66) | ||||
| Recessive Model | 1.58 | 0.150 | 1.30 | 0.429 | 1.25 | 0.448 | |
| (DD vs. II + ID) | (0.85-2.95) | (0.68-2.46) | (0.70-2.22) | ||||
| Female Group | |||||||
| DR vs. CN | T2D vs. CN | DR vs. T2D | |||||
| Variant | Models | OR (95% CI) | p | OR (95% CI) | p | OR (95% CI) | p |
| VEGFA -2578 C/A (rs699947) | Dominant Model | 1.11 | 0.641 | 1.17 | 0.449 | 0.95 | 0.821 |
| (CA + AA vs. CC) | (0.71-1.73) | (0.78-1.78) | (0.59-1.51) | ||||
| Heterozygous Model | 1.04 | 0.836 | 0.94 | 0.751 | 1.11 | 0.632 | |
| (CC + AA vs.CA) | (0.69-158) | (0.64-1.38) | (0.72-1.71) | ||||
| Recessive Model | 1.21 | 0.447 | 1.11 | 0.644 | 1.08 | 0.753 | |
| (AA vs. CC + CA) | (0.74-1.96) | (0.71-1.76) | (0.66-1.79) | ||||
| VEGFA -2549 I/D (rs35569394) | Dominant Model | 1.38 | 0.162 | 1.33 | 0.186 | 1.04 | 0.864 |
| (ID + II vs. DD) | (0.88-2.18) | (0.87-2.02) | (0.64-1.70) | ||||
| Heterozygous Model | 1.06 | 0.785 | 0.93 | 0.691 | 1.14 | 0.539 | |
| (DD + II vs.ID) | (0.70-1.60) | (0.63-1.36) | (0.74-1.76) | ||||
| Recessive Model | 1.58 | 0.064 | 1.27 | 0.316 | 1.25 | 0.380 | |
| (II vs. DD + ID) | (0.97-2.56) | (0.80-2.02) | (0.76-2.04) | ||||
| VEGFA -7 C/T (rs25648) | Dominant Model | 0.76 | 0.281 | 2.73 | <0.001 | 0.28 | <0.001 |
| (CT + TT vs. CC) | (0.46-1.25) | (1.81-4.11) | (0.17-0.46) | ||||
| Heterozygous Model | 1.31 | 0.293 | 0.40 | <0.001 | 3.29 | <0.001 | |
| (CC + TT vs. CT) | (0.79-2.17) | (0.26-0.60) | (2.0-5.41) | ||||
| Recessive Model | 0.79 | 0.852 | 3.78 | 0.106 | 0.21 | 0.151 | |
| (TT vs. CC + CT) | (0.07-8.84) | (0.75-18.96) | (0.03-1.76) | ||||
| MDM2 (rs3730485) | Dominant Model | 0.86 | 0.503 | 1.21 | 0.344 | 0.72 | 0.139 |
| (ID + DD vs. II) | (0.57-1.32) | (0.82-1.78) | (0.46-1.11) | ||||
| Heterozygous Model | 1.21 | 0.385 | 0.93 | 0.739 | 1.30 | 0.260 | |
| (II + DD vs. ID) | (0.78-1.88) | (0.63-1.39) | (0.82-2.04) | ||||
| Recessive Model | 1.25 | 0.665 | 1.84 | 0.172 | 0.68 | 0.425 | |
| (DD vs. II + ID) | (0.46-3.43) | (0.77-4.39) | (0.26-1.75) | ||||
| Male Group | |||||||
| DR vs. CN | T2D vs. CN | DR vs. T2D | |||||
| Variant | Models | OR (95% CI) | p | OR (95% CI) | p | OR (95% CI) | p |
| VEGFA -2578 C/A (rs699947) | Dominant Model | 0.91 | 0.657 | 1.13 | 0.584 | 0.80 | 0.270 |
| (CA + AA vs. CC) | (0.59-1.39) | (0.72-1.77) | (0.54-1.19) | ||||
| Heterozygous Model | 0.86 | 0.445 | 0.78 | 0.210 | 1.11 | 0.564 | |
| (CC + AA vs.CA) | (0.58-1.27) | (0.52-1.15) | (0.78-1.57) | ||||
| Recessive Model | 0.72 | 0.160 | 0.81 | 0.363 | 0.89 | 0.610 | |
| (AA vs. CC + CA) | (0.46-1.14) | (0.51-1.15) | (58-1.38) | ||||
| VEGFA -2549 I/D (rs35569394) | Dominant Model | 1.66 | 0.029 | 1.38 | 0.167 | 1.21 | 0.389 |
| (ID + II vs. DD) | (1.06-2.63) | (0.87-2.18) | (0.79-1.84) | ||||
| Heterozygous Model | 0.81 | 0.280 | 0.75 | 0.160 | 1.07 | 0.691 | |
| (DD + II vs.ID) | (0.55-1.19) | (0.51-1.12) | (0.76-1.53) | ||||
| Recessive Model | 1.09 | 0.680 | 0.85 | 0.478 | 1.29 | 0.212 | |
| (II vs. DD + ID) | (0.71-1.68) | (0.54-1.33) | (0.87-1.92) | ||||
| VEGFA -7 C/T (rs25648) | Dominant Model | 0.61 | 0.035 | 2.33 | <0.001 | 0.26 | <0.001 |
| (CT + TT vs. CC) | (0.39-0.97) | (1.53-3.57) | (0.18-0.39) | ||||
| Heterozygous Model | 1.93 | 0.005 | 0.45 | <0.001 | 4.31 | <0.001 | |
| (CC + TT vs. CT) | (1.22-3.05) | (0.29-0.69) | (2.89-6.42) | ||||
| Recessive Model | 0.38 | 0.432 | 2.17 | 0.345 | 0.18 | 0.108 | |
| (TT vs. CC + CT) | (0.03-4.23) | (0.43-10.91) | (0.02-1.47) | ||||
| MDM2 (rs3730485) | Dominant Model | 0.88 | 0.507 | 0.92 | 0.701 | 0.95 | 0.767 |
| (ID + DD vs. II) | (0.59-1.29) | (0.62-1.38) | (0.66-1.35) | ||||
| Heterozygous Model | 1.29 | 0.207 | 1.06 | 0.774 | 1.22 | 0.289 | |
| (II + DD vs. ID) | (0.87-1.93) | (0.71-1.59) | (0.85-1.76) | ||||
| Recessive Model | 1.62 | 0.263 | 0.89 | 0.808 | 1.82 | 0.132 | |
| (DD vs. II + ID) | (0.70-3.77) | (0.34-2.30) | (0.83-3.98) | ||||
For VEGFA -2578 C/A (rs699947) polymorphism, MAF was slightly lower in DR patients as compared to both T2D patients and CN in total samples and in the male group (Table 2). In the female group, MAF was slightly higher in DR patients compared to T2D patients and healthy controls (Table 2). No significant difference was observed with genotypes, alleles, and genetic models in any of the groups studied (Tables 2, 3).
MAF of VEGFA -2549 I/D (rs35569394) polymorphism was higher to some degree in DR cases than in T2D cases and CN in the female group (Table 2). In the female group, I allele and II genotype were significantly associated with an increased risk of DR compared to healthy controls (Table 2). Genetic model analysis revealed a significant increased risk of DR under the dominant model in the male group (Table 3). VEGFA -2549 I/D polymorphism was not associated with DR risk in total subjects (Table 2).
For VEGFA -7 C/T (rs25648) polymorphism, MAF was lower in DR cases compared to both T2D cases and CN in all groups (Table 2). The CT genotype was associated with a reduced risk of DR as compared to T2D cases and CN in total subjects, as well as in male and female groups (Table 2). Genetic model analysis showed a reduced risk of DR under the dominant model, whereas an increased risk of DR was observed under a heterozygous genetic model in all groups (Table 3). In total subjects, the recessive model showed protection towards DR cases vs T2D cases (Table 3). For rs25648 polymorphism, CT genotype and T allele were associated with reduced risk of PDR and NPDR as compared to T2D cases (Table 2).
MAF of MDM2 rs3730485 polymorphism was moderately lower in DR cases as compared to T2D cases and healthy controls in total subjects and in the female group (Table 2). In the male group, MAF was slightly higher in DR subjects compared to T2D subjects and healthy controls (Table 2). No significant difference was observed with genotypes, alleles, and genetic models in any of the groups studied (Tables 2, 3).
Linkage disequilibrium and haplotype analysis
Linkage disequilibrium (LD) analysis showed a strong LD between rs699947 and rs35569394 (D′ = 0.89, r2 = 0.78) (Figure 3). Haplotype analysis of rs69997-rs35569394-rs25648 polymorphisms showed that haplotype C-I-C and A-D-C were significantly associated with increased risk of DR as compared to T2D cases and CN, whereas haplotype A-I-T and C-D-T was significantly associated with reduced risk of DR as compared to T2D cases. Haplotypes A-I-T and C-D-T showed 2.29-fold and 1.96-fold risk for T2D as compared to CN (Table 4).
Table 4. Haplotype and genotype combinations data of VEGFA polymorphisms with DR risk.
Significant p-values are displayed in bold. p-value < 0.05 was considered significant.
* VEGFA -2578C/A (rs699947) - VEGFA -2549I/D (rs35569394) - VEGFA -7C/T (rs25648). DR: Diabetic Retinopathy, T2D: Type 2 Diabetes, CN: Healthy Controls
| Haplotype* | DR | T2D | CN | DR vs. CN | T2D vs. CN | DR vs. T2D | |||
| (%) | (%) | (%) | OR (95% CI) | p-value | OR (95% CI) | p-value | OR (95% CI) | p-value | |
| C-D-C | 46.0 | 43.6 | 48.4 | Reference | Reference | Reference | |||
| A-I-C | 35.6 | 28.8 | 35.5 | 1.05 (0.84-1.31) | 0.660 | 0.94 (0.74-1.18) | 0.580 | 1.15 (0.90-1.46) | 0.280 |
| A-I-T | 6.0 | 17.3 | 9.1 | 0.69 (0.45-1.05) | 0.082 | 2.29 (1.62-3.24) | <0.001 | 0.30 (0.20-0.44) | <0.001 |
| C-D-T | 2.4 | 5.9 | 4.0 | 0.63 (0.30-1.32) | 0.220 | 1.96 (1.05-3.66) | 0.036 | 0.33 (0.16-0.65) | 0.002 |
| C-I-C | 5.5 | 1.6 | 1.2 | 3.57 (1.77-7.19) | <0.001 | 1.03 (0.41-2.54) | 0.960 | 2.95 (1.48-5.91) | 0.002 |
| A-D-C | 3.0 | 1.0 | 1.4 | 1.97 (0.92-4.22) | 0.080 | 0.71 (0.29-1.78) | 0.470 | 3.54 (1.33-9.39) | 0.012 |
| Genotype* Combination | |||||||||
| (n) | (n) | (n) | |||||||
| CC-DD-CC | 88 | 76 | 101 | Reference | Reference | Reference | |||
| CC-DD-CT | 12 | 27 | 17 | 0.81 (0.37-1.79) | 0.603 | 2.11 (1.07-4.15) | 0.030 | 0.38 (0.18-0.81) | 0.012 |
| CC-ID-CC | 17 | 4 | 2 | 9.76 (2.19-43.4) | 0.003 | 2.66 (0.47-14.9) | 0.266 | 3.67 (1.18-11.4) | 0.024 |
| CA-ID-CC | 146 | 101 | 124 | 1.35 (0.93-1.96) | 0.113 | 1.08 (0.73-1.61) | 0.696 | 1.25 (0.84-1.86) | 0.275 |
| CA-ID-CT | 27 | 98 | 51 | 0.61 (0.35-1.05) | 0.074 | 2.55 (1.63-4.0) | <0.001 | 0.24 (0.14-0.4) | <0.001 |
| CA-II-CC | 11 | 2 | 2 | 6.31 (1.36-29.3) | 0.019 | 1.33 (0.18-9.65) | 0.779 | 4.75 (1.02-22.1) | 0.047 |
| AA-II-CC | 50 | 36 | 58 | 0.99 (0.62-1.59) | 0.965 | 0.82 (0.49-1.38) | 0.461 | 1.2 (0.71-2.03) | 0.499 |
| AA-II-CT | 23 | 45 | 27 | 0.98 (0.52-1.83) | 0.944 | 2.21 (1.26-3.89) | 0.006 | 0.44 (0.25-0.80) | 0.007 |
Genotype-genotype interaction
The genotype combination data are given in Table 4. Genotype combinations of CC-DD-CT, CA-ID-CT, and AA-II-CT showed a significantly decreased risk of DR as compared to T2D cases. The power of the study was more than 80% for all the studied polymorphisms.
Discussion
In this study, VEGFA (rs699947, rs35569394, and rs25648) and MDM2 (rs3730485) polymorphisms were screened to determine the risk of DR in a group of T2D patients from Punjab, Northwest India. DR is a leading cause of visual loss in working-age populations [45,46]. For patients who survive for over 20 years with T2D, the majority suffer from DR [47,48]. The main progressors of DR are inflammation, angiogenesis, and apoptosis, leading to retinal cell death and eyesight loss [49,50]. VEGFA serves as the primary regulator in both normal and abnormal vascular development [51]. It has the potential to enhance retinal vascular permeability, destroy the blood-retinal barrier, and generate new blood vessels in DR, all of which are directly linked to the emergence and progression of DR [52]. The polymorphisms in promoter and 5ʹUTR lead to elevated transcriptional activity of the VEGFA gene, resulting in the increased production of VEGF as reflected in the serum VEGF levels of the individuals [53], as well as in vitro studies [54]. VEGF inhibition has been reported to cause nearly complete scaling down in retinal neovascularization, revealing the critical roles of VEGF in DR pathogenesis and management [55]. The p53 protein promotes apoptosis, and the VEGF protein promotes angiogenesis. The MDM2 gene product is the down-regulator of p53 and has been reported as the upregulator of VEGF; both of these functions of MDM2 increase the risk of DR [24]. There have been very few studies to test the association of rs699947, rs35569394, and rs25648 polymorphisms with DR risk worldwide, and no study was from Northwest India. There has been no previously reported study on the association of rs3730485 polymorphism with DR susceptibility worldwide. Most of the previous studies did not include healthy controls or diabetic controls (T2D individuals without DR) in their genetic analysis, which keeps us from more precise results. In the present study, the subject groups consisted of CN, T2D controls (without retinopathy), and individuals with DR (PDR and NPDR), for understanding the genetics of VEGFA -2578 C/A (rs699947), VEGFA -2549 I/D (rs35569394), VEGFA -7 C/T (rs25648), and MDM2 (rs3730485) gene promoter region polymorphisms with the risk of DR in a population from Punjab, Northwest India. Details of the previous studies on DR with VEGFA rs699947, rs35569394, and rs25648 polymorphisms and their outcomes are given in Table 5.
Table 5. Summary of published studies of VEGFA rs69997, rs35569394, and rs25648 polymorphisms with DR.
DR: Diabetic Retinopathy, T2D: Type 2 Diabetes, CN: Healthy Controls
| Variant | Country | Subjects | Results | Reference | ||
| DR | T2D | CN | ||||
| rs699947 | Iraq | 103 | 31 | 36 | No association | [51] |
| Central India | 105 | 51 | - | No association | [13] | |
| Indonesia | 33 | 35 | - | Association of C allele with increased risk of DR | [56] | |
| Egypt | 46 | 41 | 41 | No association | [57] | |
| Egypt | 74 | 74 | - | No association | [58] | |
| Spain | 14 | 26 | - | Association of CA genotype with increased risk for DR | [19] | |
| China | 129 | 139 | - | Association of AA genotype with increased risk of DR | [59] | |
| Korea | 253 | 134 | 260 | Association of A allele with increased risk of DR | [60] | |
| Japan | 177 | 292 | - | Association of A allele and AA genotype with increased risk of PDR | [61] | |
| Finland | 131 | 98 | 526 | No association | [62] | |
| Australia | 290 | 235 | - | Association of AA genotype with increased risk of DR | [63] | |
| Japan | 175 | 203 | - | No association | [64] | |
| rs35569394 | Central India | 105 | 51 | - | No association | [13] |
| Poland | 38 | 62 | - | Association of D allele with increased risk for DR | [65] | |
| Spain | 14 | 26 | - | Association of DD genotype with decreased risk and ID genotype with increased risk of DR | [19] | |
| Poland | 195 | 92 | 493 | Association of D allele with increased risk of DR | [40] | |
| rs25648 | South India | 120 | 90 | - | Association of T allele and CT genotype with increased risk of DR | [66] |
| Japan | 150 | 118 | - | No association | [67] | |
VEGFA rs699947 polymorphism was significantly associated with DR in Korean [60], Japanese [61], Chinese [59], and Australian [63] populations, whereas no association with DR was observed in Iraq [51] and Egyptian [57,58] populations. A study from central India reported no association of rs699947 DR cases vs T2D cases [13]. A meta-analysis of nine studies showed that A allele and CA genotype were significantly associated with PDR risk in the overall Asian populations [68]. In the present study, there was no significant association of rs699947 with DR risk. Similarly, no association of rs699947 with DR has been reported in studies from Finland [62] and Japan [64].
The association of D-allele in rs35569394 with increased VEGF protein expression has been documented in the literature [69]. D allele was associated with an increased risk of DR in the Polish population [40,65]. The present study showed no significant difference in overall samples, but in the female group, II genotype and I allele showed a significantly increased risk of DR in comparison to CN. No association of rs35569394 with DR risk has been reported in a single previous study from central India [13].
There are very few studies on rs25648 in DR worldwide. In the present study on Northwest Indians, CT-genotype and T-allele showed significant protection to DR as compared to T2D cases and healthy controls. The model analysis showed significant protection in the dominant model and significant risk in the heterozygous model for DR cases vs. T2D cases. A study from Japan reported no significant association of rs25648 with DR [67]. CT-genotype and T-allele conferred significant risk towards DR in the South Indian population [66].
MDM2 rs3730485 polymorphism is present in the promoter P1 region of MDM2 and has been reported to control the expression of the gene [70]. A previous study has revealed a potential association between MDM2 T309G and PDR. However, at present, there is a lack of direct evidence that supports the role of MDM2 in DR [24]. No previous reported study has analyzed the association of MDM2 rs3730485 polymorphism with DR. In the present study, there was no significant association of genetic variation with DR or T2D risk in the studied groups.
In the present study, a strong LD was observed between rs699947 and rs35569394. Similarly, complete LD between the C-allele of rs699947 and the D-allele of rs35569394 have been reported in Central Indian DR patients [13]. Haplotypes C-I-C and A-D-C conferred a risk of more than twofold in DR as compared to T2D cases, and haplotype C-I-C showed a significant risk of 3.57-fold towards DR as compared to CN in the present study (Table 4). Haplotypes A-I-T and C-D-T revealed significant protection to DR as compared to T2D. The C-D haplotype of rs699947 and rs35569394 polymorphisms was associated with enhanced VEGF expression [60]. Genotype-genotype combinations CC-ID-CC and CA-II-CC showed a significant risk of 3.67-fold and 4.75-fold in DR cases vs. T2D cases. The combinations of CC-DD-CT, CA-ID-CT, and AA-II-CT revealed significant protection in DR cases vs. T2D cases. The findings of the present study in Northwest Indians and previously reported studies in different populations [57,71] have different results, suggesting that ethnicity influences the association of VEGFA polymorphisms with DR.
Strengths and limitations of the study
Strengths: This is the first study to evaluate the association of four selected polymorphisms with DR in the studied population. DR has been studied in the context of its two types (PDR and NPDR), males and females, and their relation with the polymorphic variants. Additionally, this study includes the T2D patients as diabetic controls, which makes the results clearer.
Limitations: The present study was limited by not having expression analysis data of the VEGFA and MDM2 genes in the studied population. The selected genes were studied with only one and three polymorphisms, so more polymorphisms should be analyzed for better knowledge of the genetics of DR. Further, functional studies could be done. The study population could also be subdivided into ethnic groups for a better understanding of the genetics of DR. Additionally, the current study was carried out only on the population from the Punjab region, which could differ from the whole of Northwest India.
Conclusions
In conclusion, the results of our study revealed that VEGFA -7 C/T (rs25648) polymorphism was significantly associated with a decreased risk of DR and that VEGFA -2549 I/D (rs35569394) polymorphism was significantly associated with an increased risk of DR in the female group. In the present study, haplotypes C-I-C and A-D-C were associated with more than twofold increased risk of DR. The present study was limited in not having corresponding evidence such as the level of gene and protein expression. This is the first study to investigate the association of MDM2 rs3730485 polymorphism with DR and the first in recent years to study the association of VEGFA -7 C/T (rs25648) with DR. Analysis of MDM2 rs3730485 and VEGFA -2578 C/A (rs699947) polymorphisms reported no significant association with the risk of DR in the studied population. The current study has furthered our knowledge about understanding the genetics of VEGFA and MDM2 genes with DR in the Northwest Indian population, rooting for further future research on the topic.
Acknowledgments
The authors would like to thank all the study participants. Financial support from the Indian Council of Medical Research - Senior Research Fellowship (ICMR-SRF) (No. 3/1/3(6)/Endo-fellowship/21-NCD-II) is highly acknowledged.
Disclosures
Human subjects: Consent was obtained or waived by all participants in this study. Institutional Ethics Committee of Guru Nanak Dev University issued approval Letter No. 573/HG, Dated- 29/03/2018. This study was approved by the Institutional Ethics Committee of Guru Nanak Dev University, Amritsar, Punjab, India (Letter No. 573/HG, Dated- 29/03/2018).
Animal subjects: All authors have confirmed that this study did not involve animal subjects or tissue.
Conflicts of interest: In compliance with the ICMJE uniform disclosure form, all authors declare the following:
Payment/services info: All authors have declared that no financial support was received from any organization for the submitted work.
Financial relationships: All authors have declared that they have no financial relationships at present or within the previous three years with any organizations that might have an interest in the submitted work.
Other relationships: All authors have declared that there are no other relationships or activities that could appear to have influenced the submitted work.
Author Contributions
Concept and design: Manroop Singh Buttar, Kamlesh Guleria, Swarkar Sharma, AJS Bhanwer, Vasudha Sambyal
Acquisition, analysis, or interpretation of data: Manroop Singh Buttar
Drafting of the manuscript: Manroop Singh Buttar
Critical review of the manuscript for important intellectual content: Manroop Singh Buttar, Kamlesh Guleria, Swarkar Sharma, AJS Bhanwer, Vasudha Sambyal
Supervision: Vasudha Sambyal
References
- 1.Risk of cause-specific death in individuals with diabetes: a competing risks analysis. Baena-Díez JM, Peñafiel J, Subirana I, et al. Diabetes Care. 2016;39:1987–1995. doi: 10.2337/dc16-0614. [DOI] [PubMed] [Google Scholar]
- 2.Sikka R, Babu IR, Singh G, Kaur I, Chhablani JK, Bhanwer AJS, Chakrabarti S. Human Genomics and Applications. Delhi, India: Narendra Publishing House; 2017. Some insights on the genomics of diabetic, retinopathy. [Google Scholar]
- 3.[Epidemiological features of type 2 diabetes] Simon D. https://pubmed.ncbi.nlm.nih.gov/20465117/ Rev Prat. 2010;60:469–473. [PubMed] [Google Scholar]
- 4.IDF Diabetes Atlas: global estimates of diabetes prevalence for 2017 and projections for 2045. Cho NH, Shaw JE, Karuranga S, Huang Y, da Rocha Fernandes JD, Ohlrogge AW, Malanda B. Diabetes Res Clin Pract. 2018;138:271–281. doi: 10.1016/j.diabres.2018.02.023. [DOI] [PubMed] [Google Scholar]
- 5.Prevalence of diabetic retinopathy in the United States, 2005-2008. Zhang X, Saaddine JB, Chou CF, et al. JAMA. 2010;304:649–656. doi: 10.1001/jama.2010.1111. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Prevalence of retinopathy in non insulin dependent diabetes mellitus at a diabetes centre in southern India. Rema M, Ponnaiya M, Mohan V. Diabetes Res Clin Pract. 1996;34:29–36. doi: 10.1016/s0168-8227(96)01327-7. [DOI] [PubMed] [Google Scholar]
- 7.Prevalence of retinopathy at diagnosis among type 2 diabetic patients attending a diabetic centre in South India. Rema M, Deepa R, Mohan V. Br J Ophthalmol. 2000;84:1058–1060. doi: 10.1136/bjo.84.9.1058. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Improving management practices and clinical outcomes in type 2 diabetes study: prevalence of complications in people with type 2 diabetes in India. Das AK, Seshiah V, Sahay BK, et al. Indian J Endocrinol Metab. 2012;16:0–1. doi: 10.4103/2230-8210.104119. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Diabetic retinopathy: an epidemic at home and around the world. Raman R, Gella L, Srinivasan S, Sharma T. Indian J Ophthalmol. 2016;64:69–75. doi: 10.4103/0301-4738.178150. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Diabetic retinopathy: a review. Chu J, Ali Y. Drug Dev Res. 2008;69:1–4. [Google Scholar]
- 11.Pericyte migration: a novel mechanism of pericyte loss in experimental diabetic retinopathy. Pfister F, Feng Y, vom Hagen F, et al. Diabetes. 2008;57:2495–2502. doi: 10.2337/db08-0325. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Control of Müller glial cell proliferation and activation following retinal injury. Dyer MA, Cepko CL. Nat Neurosci. 2000;3:873–880. doi: 10.1038/78774. [DOI] [PubMed] [Google Scholar]
- 13.Association of VEGFA promoter polymorphisms rs699947 and rs35569394 with diabetic retinopathy among North-Central Indian subjects: a case-control study. Rabbind Singh A, Gupta R, Shukla M, Jain A, Shukla D. Ophthalmic Genet. 2022;43:80–87. doi: 10.1080/13816810.2021.1992786. [DOI] [PubMed] [Google Scholar]
- 14.Association of VEGF -2549 i/D and VEGF +936 C/T polymorphisms with chronic kidney disease in Northwest Indian patients. Tung GK, Sambyal V, Guleria K. https://pubmed.ncbi.nlm.nih.gov/36568591/ Indian J Nephrol. 2022;32:445–451. doi: 10.4103/ijn.ijn_420_21. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Evaluation of VEGF gene polymorphisms and proliferative diabetic retinopathy in Mexican population. Gonzalez-Salinas R, Garcia-Gutierrez MC, Garcia-Aguirre G, et al. Int J Ophthalmol. 2017;10:135–139. doi: 10.18240/ijo.2017.01.22. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.The relationships between type 2 diabetic retinopathy and VEGF-634G/C and VEGF-460C/T polymorphisms in Han Chinese subjects. Yuan Y, Wen Z, Guan Y, et al. J Diabetes Complications. 2014;28:785–790. doi: 10.1016/j.jdiacomp.2014.08.003. [DOI] [PubMed] [Google Scholar]
- 17.Relationship of vascular endothelial growth factor (VEGF) +405 G/C polymorphism and proliferative retinopathy in patients with type 2 diabetes. Feghhi M, Nikzamir A, Esteghamati A, Mahmoudi T, Yekaninejad MS. Transl Res. 2011;158:85–91. doi: 10.1016/j.trsl.2011.03.002. [DOI] [PubMed] [Google Scholar]
- 18.Association of vascular endothelial growth factor -634C/G polymorphism and diabetic retinopathy in type 2 diabetic Han Chinese. Yang Y, Andresen BT, Yang K, Zhang Y, Li X, Li X, Wang H. Exp Biol Med (Maywood) 2010;235:1204–1211. doi: 10.1258/ebm.2010.010102. [DOI] [PubMed] [Google Scholar]
- 19.Vascular endothelial growth factor polymorphisms are involved in the late vascular complications in Type II diabetic patients. Bleda S, De Haro J, Varela C, Esparza L, Ferruelo A, Acin F. Diab Vasc Dis Res. 2012;9:68–74. doi: 10.1177/1479164111426162. [DOI] [PubMed] [Google Scholar]
- 20.Identification of polymorphisms within the vascular endothelial growth factor (VEGF) gene: correlation with variation in VEGF protein production. Watson CJ, Webb NJ, Bottomley MJ, Brenchley PE. Cytokine. 2000;12:1232–1235. doi: 10.1006/cyto.2000.0692. [DOI] [PubMed] [Google Scholar]
- 21.A common 936 C/T mutation in the gene for vascular endothelial growth factor is associated with vascular endothelial growth factor plasma levels. Renner W, Kotschan S, Hoffmann C, Obermayer-Pietsch B, Pilger E. J Vasc Res. 2000;37:443–448. doi: 10.1159/000054076. [DOI] [PubMed] [Google Scholar]
- 22.Lack of association between three vascular endothelial growth factor gene polymorphisms and systemic sclerosis: results from a multicenter EUSTAR study of European Caucasian patients. Allanore Y, Borderie D, Airo P, et al. Ann Rheum Dis. 2007;66:257–259. doi: 10.1136/ard.2006.054346. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.VEGF-directed blood vessel patterning: from cells to organism. Bautch VL. Cold Spring Harb Perspect Med. 2012;2:0. doi: 10.1101/cshperspect.a006452. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.The roles of mouse double minute 2 (MDM2) oncoprotein in ocular diseases: a review. Jiang H, Luo J, Lei H. Exp Eye Res. 2022;217:108910. doi: 10.1016/j.exer.2021.108910. [DOI] [PubMed] [Google Scholar]
- 25.Surfing the p53 network. Vogelstein B, Lane D, Levine AJ. Nature. 2000;408:307–310. doi: 10.1038/35042675. [DOI] [PubMed] [Google Scholar]
- 26.Mdm2 is critically and continuously required to suppress lethal p53 activity in vivo. Ringshausen I, O'Shea CC, Finch AJ, Swigart LB, Evan GI. Cancer Cell. 2006;10:501–514. doi: 10.1016/j.ccr.2006.10.010. [DOI] [PubMed] [Google Scholar]
- 27.MDM2, an introduction. Iwakuma T, Lozano G. https://aacrjournals.org/mcr/article/1/14/993/232341/MDM2-An-Introduction. Mol Cancer Res. 2003;1:993–1000. [PubMed] [Google Scholar]
- 28.Nutlin-3, an Hdm2 antagonist, inhibits tumor adaptation to hypoxia by stimulating the FIH-mediated inactivation of HIF-1alpha. Lee YM, Lim JH, Chun YS, Moon HE, Lee MK, Huang LE, Park JW. Carcinogenesis. 2009;30:1768–1775. doi: 10.1093/carcin/bgp196. [DOI] [PubMed] [Google Scholar]
- 29.Mdm2 and HIF-1alpha interaction in tumor cells during hypoxia. Nieminen AL, Qanungo S, Schneider EA, Jiang BH, Agani FH. J Cell Physiol. 2005;204:364–369. doi: 10.1002/jcp.20406. [DOI] [PubMed] [Google Scholar]
- 30.Effect of MDM2 and vascular endothelial growth factor inhibition on tumor angiogenesis and metastasis in neuroblastoma. Patterson DM, Gao D, Trahan DN, et al. Angiogenesis. 2011;14:255–266. doi: 10.1007/s10456-011-9210-8. [DOI] [PubMed] [Google Scholar]
- 31.MDM2 regulates vascular endothelial growth factor mRNA stabilization in hypoxia. Zhou S, Gu L, He J, Zhang H, Zhou M. Mol Cell Biol. 2011;31:4928–4937. doi: 10.1128/MCB.06085-11. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.p53 plays a crucial role in endothelial dysfunction associated with hyperglycemia and ischemia. Yokoyama M, Shimizu I, Nagasawa A, et al. J Mol Cell Cardiol. 2019;129:105–117. doi: 10.1016/j.yjmcc.2019.02.010. [DOI] [PubMed] [Google Scholar]
- 33.Genetic variants in the MDM2 promoter and lung cancer risk in a Chinese population. Hu Z, Ma H, Lu D, et al. Int J Cancer. 2006;118:1275–1278. doi: 10.1002/ijc.21463. [DOI] [PubMed] [Google Scholar]
- 34.Polymorphisms in the MDM2 promoter and risk of breast cancer: a case-control analysis in a Chinese population. Ma H, Hu Z, Zhai X, et al. Cancer Lett. 2006;240:261–267. doi: 10.1016/j.canlet.2005.09.019. [DOI] [PubMed] [Google Scholar]
- 35.Identification of functional DNA variants in the constitutive promoter region of MDM2. Lalonde ME, Ouimet M, Larivière M, Kritikou EA, Sinnett D. Hum Genomics. 2012;6:15. doi: 10.1186/1479-7364-6-15. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.2. Classification and Diagnosis of Diabetes: Standards of Medical Care in Diabetes-2021. American Diabetes Association. Diabetes Care. 2021;44:0–33. doi: 10.2337/dc21-S002. [DOI] [PubMed] [Google Scholar]
- 37.Polymorphisms of the vascular endothelial growth factor and susceptibility to diabetic microvascular complications in patients with type 1 diabetes mellitus. Yang B, Cross DF, Ollerenshaw M, Millward BA, Demaine AG. J Diabetes Complications. 2003;17:1–6. doi: 10.1016/s1056-8727(02)00181-2. [DOI] [PubMed] [Google Scholar]
- 38.A simple salting out procedure for extracting DNA from human nucleated cells. Miller SA, Dykes DD, Polesky HF. Nucleic Acids Res. 1988;16:1215. doi: 10.1093/nar/16.3.1215. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Polymorphism of VEGF-2578C/A associated with the risk and aggressiveness of nasopharyngeal carcinoma in a Chinese population. Wang T, Hu K, Ren J, Zhu Q, Wu G, Peng G. Mol Biol Rep. 2010;37:59–65. doi: 10.1007/s11033-009-9526-2. [DOI] [PubMed] [Google Scholar]
- 40.Association of the VEGF gene polymorphism with diabetic retinopathy in type 2 diabetes patients. Buraczynska M, Ksiazek P, Baranowicz-Gaszczyk I, Jozwiak L. Nephrol Dial Transplant. 2007;22:827–832. doi: 10.1093/ndt/gfl641. [DOI] [PubMed] [Google Scholar]
- 41.VEGF gene polymorphism association with diabetic neuropathy. Tavakkoly-Bazzaz J, Amoli MM, Pravica V, Chandrasecaran R, Boulton AJ, Larijani B, Hutchinson IV. Mol Biol Rep. 2010;37:3625–3630. doi: 10.1007/s11033-010-0013-6. [DOI] [PubMed] [Google Scholar]
- 42.A 40-bp insertion/deletion polymorphism in the constitutive promoter of MDM2 confers risk for hepatocellular carcinoma in a Chinese population. Dong D, Gao X, Zhu Z, Yu Q, Bian S, Gao Y. Gene. 2012;497:66–70. doi: 10.1016/j.gene.2012.01.004. [DOI] [PubMed] [Google Scholar]
- 43.SNPStats: a web tool for the analysis of association studies. Solé X, Guinó E, Valls J, Iniesta R, Moreno V. Bioinformatics. 2006;22:1928–1929. doi: 10.1093/bioinformatics/btl268. [DOI] [PubMed] [Google Scholar]
- 44.Publisher Correction: SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. Shi YY, He L. Cell Research. 2023 doi: 10.1038/s41422-023-00805-3. [DOI] [PubMed] [Google Scholar]
- 45.Diabetic retinopathy: pathophysiology and treatments. Wang W, Lo AC. Int J Mol Sci. 2018;19:1816. doi: 10.3390/ijms19061816. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Diabetic retinopathy and systemic vascular complications. Cheung N, Wong TY. Prog Retin Eye Res. 2008;27:161–176. doi: 10.1016/j.preteyeres.2007.12.001. [DOI] [PubMed] [Google Scholar]
- 47.The progress in understanding and treatment of diabetic retinopathy. Stitt AW, Curtis TM, Chen M, et al. Prog Retin Eye Res. 2016;51:156–186. doi: 10.1016/j.preteyeres.2015.08.001. [DOI] [PubMed] [Google Scholar]
- 48.Global prevalence of diabetes: estimates for the year 2000 and projections for 2030. Wild S, Roglic G, Green A, Sicree R, King H. Diabetes Care. 2004;27:1047–1053. doi: 10.2337/diacare.27.5.1047. [DOI] [PubMed] [Google Scholar]
- 49.Diabetic retinopathy: global prevalence, major risk factors, screening practices and public health challenges: a review. Ting DS, Cheung GC, Wong TY. Clin Exp Ophthalmol. 2016;44:260–277. doi: 10.1111/ceo.12696. [DOI] [PubMed] [Google Scholar]
- 50.Photoreceptor cell calcium dysregulation and calpain activation promote pathogenic photoreceptor oxidative stress and inflammation in prodromal diabetic retinopathy. Saadane A, Du Y, Thoreson WB, et al. Am J Pathol. 2021;191:1805–1821. doi: 10.1016/j.ajpath.2021.06.006. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.Diabetic retinopathy progression associated with haplotypes of two VEGFA SNPs rs2010963 and rs699947. Alnaji HA, Omran R, Hasan AH, Al Nuwaini MQ. Egypt J Basic Appl Sci. 2023;31:123–134. [Google Scholar]
- 52.Meta-analysis of association between the -2578C/A polymorphism of the vascular endothelial growth factor and retinopathy in type 2 diabetes in Asians and Caucasians. Wang H, Cheng JW, Zhu LS, Wei RL, Cai JP, Li Y, Ma XY. Ophthalmic Res. 2014;52:1–8. doi: 10.1159/000357110. [DOI] [PubMed] [Google Scholar]
- 53.Serum vascular endothelial growth factor is a biomolecular biomarker of severity of diabetic retinopathy. Ahuja S, Saxena S, Akduman L, Meyer CH, Kruzliak P, Khanna VK. Int J Retina Vitreous. 2019;5:29. doi: 10.1186/s40942-019-0179-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54.VEGF polymorphisms and severity of atherosclerosis. Howell WM, Ali S, Rose-Zerilli MJ, Ye S. J Med Genet. 2005;42:485–490. doi: 10.1136/jmg.2004.025734. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55.Suppression of retinal neovascularization in vivo by inhibition of vascular endothelial growth factor (VEGF) using soluble VEGF-receptor chimeric proteins. Aiello LP, Pierce EA, Foley ED, et al. Proc Natl Acad Sci U S A. 1995;92:10457–10461. doi: 10.1073/pnas.92.23.10457. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Polymorphisms of vascular endothelial growth factor-2578C/A rs699947 are risk factors for diabetic retinopathy in type-2 diabetes mellitus patients in Bali, Indonesia. Wijaya AR, Surudarma IW, Wihandani DM, Putra IW. Biomedicine (Taipei) 2021;11:11–17. doi: 10.37796/2211-8039.1170. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57.Vascular endothelial growth factor gene polymorphism is not associated with diabetic retinopathy in Egyptian patients. Abdel Fattah RA, Eltanamly RM, Nabih MH, Kamal MM. Middle East Afr J Ophthalmol. 2016;23:75–78. doi: 10.4103/0974-9233.171760. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.A study of VEGF gene polymorphism in Egyptian patients with diabetic retinopathy. Shahin RM, Abdelhakim MA, Owid Mel S, El-Nady M. Ophthalmic Genet. 2015;36:315–320. doi: 10.3109/13816810.2014.881508. [DOI] [PubMed] [Google Scholar]
- 59.Polymorphisms in the vascular endothelial growth factor gene and the risk of diabetic retinopathy in Chinese patients with type 2 diabetes. Yang X, Deng Y, Gu H, et al. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3233387/pdf/mv-v17-3088.pdf. Mol Vis. 2011;17:3088–3096. [PMC free article] [PubMed] [Google Scholar]
- 60.Association of vascular endothelial growth factor polymorphisms with nonproliferative and proliferative diabetic retinopathy. Chun MY, Hwang HS, Cho HY, et al. J Clin Endocrinol Metab. 2010;95:3547–3551. doi: 10.1210/jc.2009-2719. [DOI] [PubMed] [Google Scholar]
- 61.Impact of variants in the VEGF gene on progression of proliferative diabetic retinopathy. Nakamura S, Iwasaki N, Funatsu H, Kitano S, Iwamoto Y. Graefes Arch Clin Exp Ophthalmol. 2009;247:21–26. doi: 10.1007/s00417-008-0915-3. [DOI] [PubMed] [Google Scholar]
- 62.Polymorphism of the manganese superoxide dismutase gene but not of vascular endothelial growth factor gene is a risk factor for diabetic retinopathy. Kangas-Kontio T, Vavuli S, Kakko SJ, Penna J, Savolainen ER, Savolainen MJ, Liinamaa MJ. Br J Ophthalmol. 2009;93:1401–1406. doi: 10.1136/bjo.2009.159012. [DOI] [PubMed] [Google Scholar]
- 63.Common sequence variation in the VEGFA gene predicts risk of diabetic retinopathy. Abhary S, Burdon KP, Gupta A, Lake S, Selva D, Petrovsky N, Craig JE. Invest Ophthalmol Vis Sci. 2009;50:5552–5558. doi: 10.1167/iovs.09-3694. [DOI] [PubMed] [Google Scholar]
- 64.Functional VEGF C-634G polymorphism is associated with development of diabetic macular edema and correlated with macular retinal thickness in type 2 diabetes. Awata T, Kurihara S, Takata N, et al. Biochem Biophys Res Commun. 2005;333:679–685. doi: 10.1016/j.bbrc.2005.05.167. [DOI] [PubMed] [Google Scholar]
- 65.Association of 18bp insertion/deletion polymorphism, at -2549 position of VEGF gene, with diabetic vascular complications in type 2 diabetes mellitus. Gala-Błądzińska A, Czech J, Braun M, Skrzypa M, Gargasz K, Mazur A, Zawlik I. Adv Med Sci. 2019;64:137–143. doi: 10.1016/j.advms.2018.08.011. [DOI] [PubMed] [Google Scholar]
- 66.Association of VEGF and eNOS gene polymorphisms in type 2 diabetic retinopathy. Suganthalakshmi B, Anand R, Kim R, Mahalakshmi R, Karthikprakash S, Namperumalsamy P, Sundaresan P. https://pubmed.ncbi.nlm.nih.gov/16636650/ Mol Vis. 2006;12:336–341. [PubMed] [Google Scholar]
- 67.A common polymorphism in the 5'-untranslated region of the VEGF gene is associated with diabetic retinopathy in type 2 diabetes. Awata T, Inoue K, Kurihara S, et al. Diabetes. 2002;51:1635–1639. doi: 10.2337/diabetes.51.5.1635. [DOI] [PubMed] [Google Scholar]
- 68.Association of VEGF gene polymorphisms with susceptibility to diabetic retinopathy: a systematic review and meta-analysis. Yang Q, Zhang Y, Zhang X, Li X, Liu J. Horm Metab Res. 2020;52:264–279. doi: 10.1055/a-1143-6024. [DOI] [PubMed] [Google Scholar]
- 69.Association of -2549 insertion/deletion polymorphism of vascular endothelial growth factor with breast cancer in North Indian patients. Kapahi R, Manjari M, Uppal MS, Singh NR, Sambyal V, Guleria K. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3582289/ Genet Test Mol Biomarkers. 2013;17:242–248. doi: 10.1089/gtmb.2012.0222. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 70.Associations between the MDM2 promoter P1 polymorphism del1518 (rs3730485) and incidence of cancer of the breast, lung, colon and prostate. Gansmo LB, Vatten L, Romundstad P, et al. Oncotarget. 2016;7:28637–28646. doi: 10.18632/oncotarget.8705. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 71.Association of VEGF gene polymorphisms with diabetic retinopathy: a meta-analysis. Gong JY, Sun YH. PLoS One. 2013;8:0. doi: 10.1371/journal.pone.0084069. [DOI] [PMC free article] [PubMed] [Google Scholar]


