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PLOS One logoLink to PLOS One
. 2024 Aug 6;19(8):e0307888. doi: 10.1371/journal.pone.0307888

Topography and soil variables drive the plant community distribution pattern and species richness in the Arjo-Diga forest in western Ethiopia

Tariku Berihun Tenaw 1,2,*,#, Tamrat Bekele Gode 2,#, Ermias Lulekal Molla 2,#, Zemede Asfaw Woldemariam 2,#
Editor: Bhoj K Acharya3
PMCID: PMC11302921  PMID: 39106214

Abstract

Understanding plant community characteristics, distributions, and environmental relationships is crucial for sustainable forest management. Thus, this study examined the relationships between plant community composition and topographic and soil variables within the Arjo-Diga forest. Vegetation data were collected from 72 nested plots (30 × 30 m2 and 2 × 2 m2) systematically laid along nine transects spaced 300 to 700 m apart. Environmental variables, including soil properties and anthropogenic disturbance, were recorded within each main plot. Agglomerative hierarchical cluster analysis and canonical correspondence analysis (CCA) using R software were employed to identify distinct plant community types and examine their relationships with environmental factors. The Shannon‒Wiener diversity index was calculated to quantify and compare species diversity among the identified community types. The analysis revealed five distinct plant community types: 1: Maesa lanceolata-Ehretia cymosa, 2: Trichilia dregeana-Flacourtia indica, 3: Acacia abyssinica-Millettia ferruginea, 4: Combretum collinum-Croton macrostachyus, and 5: Terminalia macroptera-Piliostigma thonningii. The CCA results highlighted the significant influence (p < 0.05) of altitude, CEC, TN, and disturbance on species distribution and plant community formation. The findings indicate that variation in plant communities is closely associated with altitude, TN, and CEC, as well as with disturbance factors such as human interventions, with elevation being the most influential factor. Based on these findings, it is recommended that conservation plans consider the effects of human interventions to address the challenges in conserving forests in the future. Additionally, further research efforts should focus on mitigating disturbance factors and understanding the environmental variables that affect forests to improve their protection.

Introduction

The relationship between biodiversity and ecosystem function is a fundamental area of study in ecology [1]. Thus, investigating the relationships among vegetation attributes, such as richness, diversity, evenness, and environmental factors, is vital for developing effective conservation strategies [2]. The interactions among various environmental factors can lead to changes in habitat conditions, directly or indirectly affecting species distribution and plant diversity worldwide. Plant species composition, diversity, and spatial distribution patterns are influenced by both abiotic and biotic factors [3]. Understanding the complex relationship between plants and abiotic factors is essential, and further research into their influence on species distribution and the formation of plant communities is crucial [4].

Most studies of environmental factors have focused on elevation, topography, and soil to study how environmental factors affect species composition and plant diversity in different ecosystems. In particular, altitude drastically alters abiotic factors such as water, temperature, and soil composition, which directly affect plant growth and development [5,6]. On a global scale, altitude also regulates the response of plant communities to environmental factors [7]. A study by Pandey et al. [8] reported different patterns of species richness along different elevation gradients. Several studies have shown that species richness decreases monotonically from lowest to highest elevations [9,10]. Hump-shaped patterns have also been reported at mid-elevations [11]. However, some researchers have shown low species richness at mid-elevations [12]. These contrasting results suggest species richness along elevation gradients is not a general trend since many species exhibit different phenotypic traits, such as leaf characteristics, biomass, and phenology. As a result, species richness patterns and plant species distributions along altitudinal gradients often differ meaningfully among conservationists.

Soil is another important environmental variable that shapes plant diversity and vegetation patterns by forming diverse habitats. Deficiencies in soil nutrients have been reported to impact various aspects of forests in tropical forests, including community structure, plant biomass, tree height, and basal area [13]. Conversely, forests with high species richness often exhibit high nutrient dynamics in specific locations. The influence of soil factors, such as total nitrogen (TN) and available phosphorus, on plant community structure is well established [14]. In particular, total nitrogen (TN) is a limiting factor for plant growth [15] and significantly influences plant diversity and community composition.

Additionally, studies have demonstrated that species richness can be influenced by high nitrogen deposition [16]. In tropical forests, the soil cation exchange capacity (CEC) has been found to impact tree species richness [17,18]. However, knowledge gaps must be addressed to understand how soil cation exchange capacity (CEC) affects tree species richness in tropical forests.

Species composition, diversity, and distribution are also influenced by anthropogenic disturbances such as agricultural expansion, settlement, livestock overgrazing, selective cutting, and fires [19]. Disturbance positively affects vegetation properties to a certain extent [20]. Under conditions of severe disturbance, species richness and diversity are low because most species cannot tolerate frequent destructive events. However, due to dominant competitors and fast colonizers, high species richness can be predicted at moderate levels of disturbance [21]. Understanding how species respond to human-caused disturbances is vital to making informed conservation decisions. This understanding enables practical actions such as habitat conservation and restoration to maintain critical ecological phenomena such as species distribution limits.

Various authors in Ethiopia, such as Gurmessa et al. [22], Dibaba et al. [23] and Addi et al. [24], have documented the results of studies on biodiversity, structure, and regeneration status in different moist Afromontane forests in other parts of Ethiopia. However, many of their species are threatened, endangered, or locally extinct due to habitat destruction, fragmentation, and overexploitation of forest products and habitats. Understanding the interaction between species diversity and composition and the relationships between environmental factors and plant community types remains critical for developing forest management strategies.

The Arjo-Diga forest is a Moist Afromontane Forest (MAF) and Combretum-Terminalia woodland (CTW) vegetation type located in western Ethiopia [25]. However, the relationships between various environmental factors, including cation exchange capacity, total nitrogen, soil organic carbon, phosphorus, disturbances, altitude, slope, and plant species distribution, in forest ecosystems have not been studied. To overcome this scientific data gap, investigating plant species diversity, community type richness, and community distribution patterns along environmental gradients is crucial for ensuring effective and sustainable management of the Arjo-Diga forest. Therefore, the present study aimed to (1) examine floristic composition and species diversity and (2) assess the relationships between plant and environmental variables in the study area.

Materials and methods

Description of the study area

The study was conducted in the Arjo-Diga forest, located in the Diga District, Oromia Regional State, in the southeastern part of Ethiopia. It lies at an elevation between 1,200 and 2,220 m.a.s.l. and covers an area of approximately 12,683.6 hectares. Nekemte is a major town nearby 340 km away from Addis Ababa, the capital of Ethiopia. The Arjo-Diga forest extends between 9°59′00″ N and 9°6′30″ N and 36°18′30″E and 36°24′30″ E (Fig 1). The forest is bounded by three districts: Guto Gida, Chewaka, Sasiga, and Leka Dulecha. The topography of the study area varies, ranging from flat to gentle slopes to moderate to steep slopes. The slope gradients range from 7% to 30% in the southwest and 30% to 60% in the northeast, increasing the area’s susceptibility to severe erosion. The study area comprises two agroecological zones: the lowlands (51.4%) and the midlands (48.6%) [26]. Steep slopes characterize the midlands and are predominantly covered by forests.

Fig 1. Map of Africa showing Ethiopia, the Oromia region, and the study district (source: OCHA, 2021) (https://data.humdata.org/dataset/cod-ab-eth).

Fig 1

Soil and geology

Acriosols are the dominant soil type in the study area and are characterized by heavy weathering and acidity. These soils exhibit a low cation exchange capacity ranging from 15 to 25 cmolc kg-1, a pH of 5.2, and a deficiency in phosphorus content [27]. The predominant soil colors observed were red in the midlands and black in the lowlands. Geologically, the study area comprises Precambrian rocks of high origin, including migmatites [28].

Climate

The study area mainly experiences tepid to cool subhumid mid-highlands in the northeastern part and hot to warm humid lowlands in the northwestern part. The maximum temperature was 25.7°C, and the minimum was 0.2°C (Fig 2). The mean annual precipitation is approximately 1977 mm/year, with an unimodal precipitation pattern. The monthly mean precipitation trend shows its maximum in July, June, and August. It is dry from November and extends into January.

Fig 2. Climate diagram of the study area showing the rainfall distribution and temperature variation from 1988–2018 (Data Source: National Meteorological Agency, 2020).

Fig 2

Vegetation types

Based on the most recent improved classification of the potential vegetation of Ethiopia, the Arjo-Diga forest belongs to the Moist Afromontane forest vegetation types [29]. The vegetation is distinguished from others by the presence of emergent species, including Pouteria adolf-friederici (Engl) Baehni. Other characteristic species in this forest include Sapium ellipticum (Hochst) and Pax Celtis africana Burm.f. Euphorbia ampliphylla Pax., Ficus sur Forssk, Schefflera abyssinica (Hochst. ex Rich.) Harms, Syzygium guineense ssp. afromontanum F. White, Nuxia congesta R.Br. ex Fresen, Galiniera saxifraga (Hochst.) Bridson, Rytigynia neglecta (Hiem) Robyns, Vepris dainellii (Pichi-Serm)Kokwaro, Rothmannia urcelliformis (Hiem) Bullock ex.Robym, and several Albizia species. Dominant woody climbers in the forest include Combretum paniculatum Vent Landolphia buchananii (Hallier f.) Stapf and Urera hypselodendron (Hochst. ex A.Rich.) Wedd. The western part of the study area borders the Didessa Valley, characterized by Combretum-Terminalia vegetation.

Methods of data collection

Reconnaissance survey and sampling technique

A reconnaissance survey was conducted in October 2017 in the Arjo-Diga forest to get an impression of the site conditions and identify the sampling sites in the study area. The actual fieldwork was conducted between November 2016 and January 2017. A systematic sampling technique was employed for vegetation and environmental data collection to ensure complete coverage of ecological variation and habitat heterogeneity. Seventy-two sample plots along nine-line transects were established using a Garmin GPS H72. The distances between each transect ranged from 300 to 700 m apart, and the sampling plots were 200 m apart. A square plot of 30 × 30 m (900 m2) was used to collect data on woody species. Five 2 × 2 m (4 m2) subplots (4 at each corner and 1 in the center) were nested in each 900 m2 main plot to collect data on herbaceous species.

Vegetation data collection

In each main plot, all individual trees and shrubs with a diameter at breast height (DBH) ≥ 2 cm and a height ≥ 1.5 m were measured using a caliper and clinometer, respectively. The percent cover-abundance of trees, shrubs, and lianas was visually estimated using the scale provided by Mueller-Dombois and Ellenberg [30]. Similarly, the percent cover of herbaceous species was estimated within smaller plots nested within the larger plots. Plant specimens were collected from each plot, coded, pressed, and dried. All collected voucher specimens were identified using the Flora of Ethiopia and Eritrea (volumes 1–8) and deposited in the National Herbarium of Ethiopia (ETH) at Addis Ababa University.

Environmental data collection

Environmental variables such as altitude, slope, and geographic coordinates were measured for each plot using a Garmin GPS H72. Soil samples were taken from the five 4 m2 subplots (4 at the corners and one at the center of each main plot) using a soil auger to a depth of 30 cm. These soil samples were mixed, and a composite sample (one kg) from each main plot was taken to the laboratory for analysis. Composite soil samples were air-dried, crushed, and sieved using 2 mm sieves. The chemical properties of the soil samples were analyzed at the Bedele soil laboratory following standard analytical procedures [31]. Soil organic carbon was determined using the Walkely and Black [32] methods, total nitrogen was determined using the Kjeldahl [33] method, pH was measured using a pH meter [34], available phosphorus was measured using the Bray-I methods [35], and cation exchange capacity was determined using the ammonium acetate method [36].

Disturbance was recorded as present or absent in each sampled plot within the study area. The magnitude of disturbance in each sampled plot was rated on a scale from 0 to 3 based on visible signs of vegetation disturbance parameters. These parameters included tree cutting, firewood collection, charcoal production, debarking, grazing, forest fires, the presence of bee hives, and the establishment of footpath signs following the procedure outlined by Hadera [37], Yeshitla and Bekele [38] and Senbeta et al. [39]. The disturbance level was coded as 0: no disturbance. 1: If any one of the disturbances mentioned above existed, albeit to a small degree (slightly disturbed); 2: if any two disturbance factors were noted (moderately disturbed); 3: denoting a significant level of human disturbance if three or more disturbance elements were present (highly disturbed).

Data analysis

Plant community classification

The vegetation in the study area was classified into different community types using agglomerative clustering analysis, employing a similarity ratio as the resemblance index and the Ward method as the classification method using R software version 4.2.2 [40]. The resulting community types were refined in a synoptic table, which summarized species occurrences as synoptic cover-abundance values [41]. These synoptic values represent the product of species frequency and average cover-abundance. Finally, the plant community types were named after the synoptic values of two dominant species with an indicator value of p< 0.05.

Canonical correspondence analysis (CCA) was employed to establish correlations between the identified plant community types and selected environmental and disturbance factors. The decision to use CCA ordination was based on the observation that the first axis in the detrended correspondence analysis (DCA) had a value greater than 4 (specifically 5.6), indicating the presence of heterogeneous environmental datasets in the study [42]. The CCA analysis examined various environmental factors, including altitude, slope, soil chemical properties (pH, available phosphorus, soil organic carbon, total nitrogen, and cation exchange capacity), and disturbance factors, such as tree cutting, debarking, grazing, fire, timber extraction, and charcoal production. The associations between these factors and the identified plant community types were investigated. Additionally, one-way ANOVA followed by post hoc Tukey HSD tests was used to determine whether there were significant differences in the mean environmental variables, species richness, diversity, and evenness among the plant communities. Pearson correlation analysis was also employed to verify the linear relationships among the explanatory variables, such as soil chemical properties, disturbances, and topographic variables.

Community diversity analysis

The Shannon Weiner diversity index (H’), species richness, and Shannon evenness (J) were calculated to describe community diversity using R software version 4.2.2 [40].

H=i=1sPilnPi (1)

where H’ is the Shannon–Weiner diversity index, s is the number of species, and pi is the proportion of the ith species. ln = the natural logarithm.

Shannon’s evenness index (J) was calculated by using the following equation:

J=HHmax (2)

where H′ is the Shannon–Wiener diversity index and Hmax = lns, where s is the number of species in the plot.

Sorensen’s similarity coefficient (Ss) was used to compare the similarity between two communities [43].

Ss=2a(2a+b+c) (3)

where ’a’ represents the number of species present in both communities, ’b’ represents the number of species unique to the first community, and ’c’ represents the number of species unique to the second community.

Results

Floristic composition

This study identified 234 plant species distributed across 183 genera and 73 families. The complete list of these species can be found in (S1 Table). Among the families, those with the highest species richness were Asteraceae (29 species), Fabaceae (23 species), Euphorbiaceae (14 species), Lamiaceae (12 species), and Rubiaceae (11 species). On the other hand, eight families had a species count ranging from four to six (Table 1). The recorded plant species were also classified into different growth forms, including trees, shrubs, herbs, and climbers. Trees accounted for 61 species (26%), shrubs comprised 70 species (30%), herbs constituted 84 species (36%), and climbers represented 19 species (8%) (Fig 3).

Table 1. Dominant families in the study forest accounting for many genera and species.

Family Number of genera Number of species
Asteraceae 17(10%) 29(12.4%)
Fabaceae 16(8.7%) 23(9.8%)
Rubiaceae 11(7%) 11 (4.7%)
Euphorbiaceae 10(5.5%) 14 (6%)
Lamiaceae 10(8.7%) 12(5.1%)
Acanthaceae 6(2.9%) 6(2.6%)
Poaceae 6(2.9%) 6(2.6%)
Malvaceae 4(2.2%) 5(2.1%)
Rhamnaceae 4(2.2%) 5(2.1%)
Rutaceae 4(2.2%) 4(1.7%)
Sapindaceae 4(2.2%) 6(2.6%)
Verbenaceae 4(2.2%) 4(1.7%)
Vitaceae 4(2.2%) 5(2.1%)

Fig 3. Habits of plant species in the study area.

Fig 3

Of the total identified plant species, 20 (8.5%) were endemic to the flora of Ethiopia and Eritrea (S1 Table). Among these endemic species, Crotalaria rosenii, Impatiens tinctoria, Kalanchoe petitiana, Pycnostachys abyssinica, and Solanecio gigas are newly documented species that have not been previously reported in the floristic region of Wollega (Table 2).

Table 2. Newly documented species and endemic species identified from the Wollega floristic region.

Species name Family Habit Species distribution in the Flora Region
Crepis foetida Asteraceae H EW, TU, GD,SU,AR, HA
Crotalaria rosenii* Fabaceae S SU, AR, BA, KF,SD
Cyperus distans Cyperaceae H AF, GD,SU,IL,KF,GG, SD
Euphorbia ampliphylla Euphorbiaceae T TU, GD, GJ, WU, SU, IL, KF, SD, HA
Impatiens tinctoria* Balsaminaceae H GD, SU, AR, KF, SD, BA
Kalanchoe petitiana* Crassulaceae H EW, GD,WU,SU,AR,BA, HA
Maytenus arbutifolia Celastraceae T SU, AR, SD,GG
Olea capensis subsp. Macrocarpa Oleaceae T GD, SU, AR, IL, KF, SD, BA
Pycnostachys abyssinica* Lamiaceae S IL, KF, GG, SD
Solanecio gigas* Asteraceae S GD, GJ, WU, SU, AR, SD, IL, KF, BA
Solanum incanum Solanaceae S EW, EE, TU, SU, GG, SD, BA, AR
Tagetus minuta Asteraceae H EW, TU, GD, WU, SU, KF, SD, BA, HA
Trifolium semiplosum Fabaceae H EW, TU, GD, WU, SU, AR, BA, SD

Note: Habit (T = Tree, S = Shrub, H = Herb); EW = Eritrea west, Eretria, TU = Tigray region, Ethiopia, GD = Gondar region, Ethiopia, SU = Shewa upland, Ethiopia, AR = Arsi region, Ethiopia, WL = Wellega region, Ethiopia, IL = Ilubabor region, Ethiopia, KF = Kefa region, Ethiopia, GG = Garno Gofa region, Ethiopia, SD = Sidamo region, Ethiopia, BA = Bale region, Ethiopia, HA = Hararge region, Ethiopia, WU = Welo region, Ethiopia, EE = Eritrea East, and * stands for newly documented endemic species in the Wollega floristic region.

Plant community types

This study employed hierarchical cluster analysis to identify five distinct plant community types (Fig 4). The dendrogram was constructed using the similarity ratio and Ward’s method, illustrating the relationships between the five clusters based on percent species coverage data. The analysis involved clustering a data matrix consisting of 72 plots and 234 plant species using agglomerative hierarchical cluster analysis. Each community type was named after one or two dominant indicator tree and shrub species, chosen based on their significant indicator values and synoptic mean abundances (Table 3). In this study, a species was considered an indicator of a particular group if its indicator value was statistically significant (p < 0.05) (S2 Table). Consequently, five plant communities types were identified in this study: Maesa lanceolata-Ehretia cymosa, Trichilia dregeana-Ficus vasta, Acacia abyssinica-Millettia ferruginea, Combretum collinum-Bersama abyssinica, and Terminalia macroptera-Piliostigma thonningii. Each community type is described as follows:

Fig 4. Dendrogram showing the five distinct plant community types, 1 (Community type 1) = Maesa lanceolata-Ehretia cymosa community type, 2 (Community type 2) = Trichilia dregeana–Ficus vasta community type, 3 (Community type 3) = Acacia abyssinica-Millettia ferruginea community type, 4 (Community type 4) = Combertum collinum–Bersama abyssinica community type, and 5 (Community type 5) = Terminalia macroptera-Piliostigma thonninigii community type.

Fig 4

Table 3. Synoptic mean cover value of species in each community type.

Species name Community types
C1 C 2 C 3 C 4 C 5
Maesa lanceolata 2.73 1.87 1.37 0.85 1.8
Ehretia cymosa 2.32 0 0 0.1 0
Albizia gummifera 1.73 0.56 1.75 1.5 0
Cordia africana 1.17 1.13 1.33 0.55 1.32
Trichilia dregeana 1.16 4.33 1.08 1 3
Flacoutia indica 1.03 2.18 2.94 2.6 2.8
Ficus exasperate 0.11 2.9 1.78 2 1.98
Ficus vasta 0.54 3.18 0.65 0.25 1.45
Acaccia abyssinica 0.64 1.6 5.31 0.1 0
Millettia ferruginea 0.09 1.34 3.35 0.15 1
Stereospermum kunthianum 0 1.3 2.33 1.75 3
Apodytes dimidiate 0 1.23 2.24 1.77 0.5
Ficus thonningii 1.09 0 1.67 0.5 0.3
Maytenus gracilipes 0.63 1.34 1.37 0.15 0
Combretum collinum 0.18 2.43 0 4.54 0.6
Croton macrostachyus 0.17 1.91 0.34 2.31 3.1
Bersama abyssinica 1.63 1.86 0.62 2.65 0.9
Combretum molle 0 0.08 0 2.01 1.3
Bridelia macrantha 0.09 1.73 1.67 1.65 0.9
Terminalia macroptera 0 0.56 3.37 1.65 4.42
Piliostigma thonningi 0.09 0 2 0.45 3.34
Hymenodictylon floribundum 0 0 0.12 0.2 2.13
Ximenia americana 0 0.73 1.3 2.1 1
Warburgia ugandensis 0.09 1.17 0.65 1.54 0.4
Number of plots 11 23 8 20 10

The bold values indicate the species used to name each plant community type.

Maesa lanceolata-Ehretia cymosa community type (C1)

This community type is situated at the highest elevation within the study area, from 1608 to 1992 m.a.s.l. It comprises 110 species. Among the observed tree species, notable dominants included Albizia gummifera, Celtis africana, Millettia ferruginea, and Prunus africana. In the herbaceous layer, the dominant species consisted of Agratum conzoides, Bidens pilosa, Achyranthus aspra, and Digitaria abyssinica. Common lianas/climbers found in this community include Clematis simensis, Dioscorea praehensilis, Phytolaca decandra, Rhamnus prinoides, Landolphia buchananii, Cyphostemma cyphopetalum, and Urera hypselodendron. The community exhibited five indicator species with significant indicator values (p < 0.05) (S2 Table). Additionally, this community is characterized by economically important species such as Coffea arabica, Dioscorea praehensilis, and Piper capense. Pteridium aquilinum, a dominant fern species, occurs exclusively within this community. Each community type is described as follows:

Trichilia dregeana–Ficus vasta community type (C2)

This community was found between 1537 and 1631 m.a.s.l. and included 23 plots and 148 species. Syzygium guineense subsp. guineense, Ficus vasta, and Croton macrostachyus were the dominant tree species, along with Trichilia dregeana and Flacourtia indica. Other associated tree species are Apodytes dimidiata, Combertum collinum, Ficus mucuso, Warburgia ugandensis, and Cordia africana. There were three indicator species, namely, Cyathula cylindrical, Flacourtia indica, and Bersama abyssinica, with significant indicator values (p<0.05) (S2 Table). Maytenus gracilipes and Carisa spinarum were the dominant shrub species. The herb layer was dominated by Oplismenus hirtellus, Laggera crispata, and Kalanchoe petitiana. Lianas in this community include Jasminum abyssinicum, Saba comonesis, Capparis tomentosa, Smilax anceps, Rubus apetalus, and Combretum paniculatum.

Acacia abyssinica-Millettia ferruginea community type (C3)

This community is spread across altitudes from 1476 to 1792 m.a.s.l. and includes eight plots and 94 species. The dominant tree species in the community are Croton macrostachyus, Albizia gummifera, Buddleja polystachya, Acacia abyssinica, and Millettia ferruginea. Other prominent tree species include Combertum collinum, Cordia africana, Bridelia micrantha, Croton macrostachyus, and Maesa lanceolata. The shrub layer is dominated by species such as Maytenus gracilipes, Senna petersiana, Grewia ferruginea, Vernonia auriculifera, Brucea antidysenterica, and Nuxia congesta. Dominant species, including Sonchus bipontini, Tristemma mauritianum, Achyranthus aspra, Bidens macroptera, and Oplismenus hirtellus characterize the herb layer. Regarding lianas and climbers, the community is characterized by Paullinia pinnata and Cyphostemma adenocaule. Additionally, this community exhibited seven indicator species with significant indicator values (p < 0.05) (S2 Table).

Combertum collinum– Bersama abyssinica community type (C4)

This community spread at altitudes between 1630–1711 m.a.s.l. Pouteria adolfi-friederici was the only emergent tree species found in this community. Stereospermum kunthianum, Terminalia macroptera, and Bridelia micrantha were the dominant tree species, followed by Combertum collinum and Croton macrostachyus. Other tree species are Ficus sycomorus, Entada abyssinica, Ximenia americana, Albiza gummifera, and Flueggea virosa. The shrub species are dominated by Clausena anisata, Vepris dainellii, Gardenia ternifolia, and Acanthus polystachius. Dominant herb layer species are Haumaniastrum villosum, Helinus mystacinus, Indigofera spicata, Senna occidentalis, Pennisetum thumbergi, and Crotalaria lachnophora. Clematis longicauda and Clematis simensis are the most common climbers in this community. This community has three indicator species, namely, Combretum collinum, Maytenus obscura, Gnidia glauca, and Guizotia villosa, with significant indicator values (p < 0.05) (S2 Table).

Terminalia macroptera-Piliostigma thonninigii community type (C5)

This community is represented by ten plots and 98 species, located within an altitude range of 1501 to 1672 m.a.s.l. The dominant tree species in this community include Stereospermum kunthianum and Syzygium guineense subsp. afromontanum, Ficus exasperata, Gardenia ternifolia, and Flueggea virosa. Other prominent tree and shrub species found in the community include Combretum molle, Ficus mucuso, Albizia malacophylla, Pavetta abyssinica, Maytenus obscura, Ximenia americana, Oxythenteria abyssinica, and Flacourtia indica. The herb layer is composed of species Piliostigma thonningii, such as Crotalaria ononoides, Aframomum alboviolaceum, Conyza sumatreosis, Alysicarpus rugosus, and Guizotia villosa. Among the climbers/vines present in this community, Ampelocissus schimperiana and Cissampelos pareira are the most common. Additionally, several indicator species with significant indicator values have been identified within this community. Gardenia ternifolia, Syzygium guineense subsp.afromontanum, and Terminalia macroptera are most important, as indicated in Table 3.

Plant community composition and similarity among the five community types

Computation of the Shannon‒Wiener diversity index revealed that Community 4 exhibited the highest species diversity and richness among the studied community types, followed by Community 2 and Community 1 (Table 4). However, when considering evenness, the order of the communities with decreasing evenness was 3, 5, and 1. This order does not align with the arrangement of the communities based on decreasing species richness.

Table 4. Diversity, richness, and evenness of plant communities.

Community types Species richness Shannon diversity (H’) Shannon- Evenness (J)
Community 1 110 4.1 0.87
Community 2 148 4.3 0.86
Community 3 94 3.9 0.89
Community 4 162 4.4 0.85
Community 5 98 4 0.88

Based on Sorensen’s similarity coefficient, Communities 2 and 4 significantly overlapped in species composition, with 79% of the species being shared between them (Table 5). Similarly, Communities 1 and 2 also demonstrated relatively high similarity, indicating considerable species overlap. However, the similarity between Communities 3 and 5 is comparatively lower. Notably, this difference in similarity can be attributed to various environmental factors, including altitude, anthropogenic influences, and soil type, all of which were considered in the present study.

Table 5. Similarity indices among community types in the study area.

Community types CI C2 C3 C4 C5
C1 1
C2 0.68 1
C3 0.34 0.36 1
C4 0.45 0.79 0.39 1
C5 0.35 0.42 0.22 0.57 1

C1 = Community type 1, C2 = Community type 2, C3 = Community type 3, C4 = Community type 4, and C5 = Community type 5.

Plant community along environmental variables

In this study, we employed canonical correspondence analysis (CCA) to investigate the distribution of plant community types along environmental variables based on the detrended correspondence analysis (DCA) results. Through the use of a free Monte Carlo test (with the Adonis function), we found that among the initial set of eight environmental variables, altitude, slope, CEC, disturbances, pH, and TN had significant influences (p < 0.05) on the community distribution (Fig 5 and Table 6). Specifically, communities 1, 2, 4, and 5 were strongly associated with altitude, while community 3 had associations with CEC and TN. Moreover, communities 4, 5, and 2 were strongly influenced by disturbance.

Fig 5. The CCA ordination graph illustrates significant environmental variables (p<0.05) and their relationships with plant communities.

Fig 5

Arrows represent ecological factors, with their lengths indicating contributions to axes. The numbers correspond to the plot numbers, and the angle between the arrows and axes denotes the variable-ordination axis correlation.

Table 6. Results of the Monte Carlo test using the Adonis functional for the environmental variables.

Environmental variables Df Sum of Squares R2 F Pr(>F)
Altitude 1 1.2540 0.0452 3.3734 0.001***
Slope 1 0.4280 0.0154 1.1513 0.027*
Disturbance 1 1.2771 0.0460 1.1452 0.002**
SOC 1 0.2935 0.0105 0.7861 0.425
TN 1 0.4328 0.0156 1.1643 0.01*
Av. P 1 0.2775 0.0103 0.8138 0.79
pH 1 0.3925 0.0141 1.0560 0.03*
CEC 1 0.5130 0.0185 1.3799 0.005*
Residuals 63 19.80091 0.8449
Total 71 27.7161 1.0000

*, ** and *** indicate significance at p<0.05, 0.01 and p<0.001, respectively.

SOC = soil organic carbon, TN = total nitrogen, CEC = cation exchange capacity, Av. P = available phosphorus.

Among the constraining environmental variables, altitude had the highest biplot score (0.95) on the first CCA axis, followed by TN, with a biplot score of 0.44 (Table 7). In contrast, the disturbance had the highest biplot score (0.94) on the second axis (CCA2), followed by CEC, with a biplot score of 0.42. All significant environmental variables, except pH and disturbance, exhibited negative correlations with CCA1. Notably, altitude strongly negatively correlated with CCA1 (r = -0.95, p<0.001), followed by TN (r = -0.47, p<0.01) (Table 7). Additionally, the second axis (CCA2) demonstrated a robust negative correlation with disturbance (r = -0.94, p<0.01). The eigenvalues obtained for the first two axes were 0.34 and 0.15, respectively. The cumulative proportion of variance explained by the first six CCA axes in the joint biplot was 85%. The first and second axes significantly explain the variation in the community distribution pattern. The first axis alone accounts for a substantial proportion of the variation (30%), and the second axis also explains a notable amount (30%). Therefore, the combined effect of the first two axes explained 43% of the variation in plant community distribution and formation patterns.

Table 7. The six axes show the biplot scores of the constraining variables, eigenvalues, and proportions of variance.

Variables CCA1 CCA2 CCA3 CCA 4 CCA 5 CCA 6
Altitude -0.95 0.11 -0.24 0.03 -0.05 -0.09
Disturbance 0.30 -0.94 0.00 0.01 0.14 0.05
Slope -0.11 0.17 0.02 0.47 0.23 -0.12
PH 0.06 0.07 0.40 -0.87 0.16 -0.02
CEC -0.28 0.42 -0.88 -0.86 0.16 -0.02
TN -0.47 0.21 -0.27 0.03 -0.03 -0.82
Av. P -0.43 0.30 0.14 0.07 0.41 0.07
SOC -0.25 0.15 -0.09 -0.15 -0.62 0.12
Eigenvalue 0.34 0.15 0.14 0.12 0.11 0.10
Proportion explained 0.30 0.13 0.12 0.11 0.10 0.09
Cumulative proportion 0.30 0.43 0.55 0.66 0.76 0.85

Correlation of environmental variables

The Pearson correlation matrix of the environmental variables is shown in Table 8. Altitude was positively correlated with slope (r = 0.23*), disturbance (r = 0.35**), CEC (r = 0.36**), TN (r = 0.26**), and Av. P (r = 0.56*). Surprisingly, the slope was positively correlated with CEC (r = 0.02). Disturbances displayed negative correlations with SOC (r = -0.05*), TN (r = -0.25*), Av. P (r = -0.383**), CEC (r = -0.384**), and pH (r = -0.06) indicated that higher disturbance levels were associated with lower values of these variables. SOC exhibited a positive correlation with available phosphorus (r = 0.12), implying that phosphorus availability tends to increase as the level of soil organic carbon increases. Conversely, it displayed negative correlations with CEC (r = -0.01*), TN (r = -0.17), and pH (r = -0.03). TN was negatively correlated with pH (r = -0.29**), CEC (r = -0.24*) and Av. P (r = .-0.06). Additionally, Av. P demonstrated a positive correlation with CEC (r = 0.01).

Table 8. Pearson correlation coefficients between environmental variables in Arjo-Diga Forest, Eastern Ethiopia.
Altitude Slope Disturbance SOC TN Av. P pH CEC
Altitude
Slope 0.23 *
Disturbance 0.35 ** -0.11
SOC 0.16 * -0.23 -0.05*
TN 0.26 ** -0.15 -0.25 * -0.03
Av. P 0.56 * -0.1 -0.38 ** 0.12 * -0.06
pH -0.45** -0.19* -0.06 -0.07 -0.29 ** -0.29 **
CEC 0.36 ** 0.02 -0.38 ** -0.01* -0.24* 0.18 0.27 *

*. Correlations are significant at the 0.05 level (2-tailed).

**. The correlation is significant at the 0.01 level (2-tailed).

Relationships between plant community types and environmental variables

Based on the results obtained from the post hoc mean comparison, significant differences were found between the five plant community types concerning environmental variables (Fig 5 and Table 9). Community type 1 was found at a higher altitude (2011.8±0.3), while community type 5 was found at a lower (15285±0) altitude. Community type 5 exhibited the highest disturbance value (2±0.5), while community type 3 had the lowest (1.4±1.13). The highest CEC (40.3±6) was recorded for community type 2, while the lowest CEC (31.2±10.7) was recorded for community type 5. Community type 2 had the highest soil organic carbon value (4.19), while community type 5 had the lowest value (2.85). The pH values of the soils ranged from 4.8±0.5 to 5.1±0.4 among the different community types (Table 8). Consequently, community type 4 was found in highly acidic soils, while communities 1, 2, 3, and 5 were found in strongly acidic soils.

Table 9. Post hoc comparison of means between environmental variables and plant communities.

Environmental variable
Plant community Types
C1 C2 C3 C4 C5
Altitude(m) 2011.8±0.3d 1761.4±1.2a 1917.4±2.1c 1648.1±.2.5b 1528.5±0.5b
Slope (%) 21.8±.3.6bc 19.8±11bc 22.7±1.3c 21.1±5a 20.3±1a
Disturbance 1.85±1ab 2±0.6ab 1.4±1.13a 1.57±0.7a 2±0.5ab
pH 5.1±0.4a 5.08±0.7a 5.02±0.5a 4.8±0.5b 5.1±0.3a
CEC 38.8±7.3c 40.3±6b 39.8±8b 32.9a 31.2±10.7a
SOC 3.6b 4.19a 3.19b 4.08a 2.85c

Note: Values in a row with different letters differ significantly (P<0.05).

Additionally, significant differences were observed in species richness, diversity, and evenness along environmental gradients, as depicted in Fig 6. The results indicated that both species richness (R2 = 0.07, p < 0.05) (Fig 6A) and Shannon diversity (R2 = 0.05, p < 0.05) (Fig 6B) decreased significantly with increasing altitude. Species richness displayed a negative association with TN (R2 = 0.04, p<0.05), suggesting that more significant TN deposition led to a decrease in species richness (Fig 6E). Conversely, the slope exhibited a significant negative association with Shannon diversity (R2 = 0.01, p< 0.01) (Fig 6G) and evenness (R2 = 0.08, p < 0.01) (Fig 6H), indicating that steeper slopes were linked to lower diversity and evenness. Interestingly, the disturbance had a significant positive association with species richness (R2 = 0.11, p < 0.003) (Fig 6C) and Shannon diversity (R2 = 0.13, p < 0.001) (Fig 6D), suggesting that areas with higher disturbance levels exhibited greater species richness and species diversity.

Fig 6.

Fig 6

Regression analysis showing relationships between altitude, slope, TN, and disturbance and species richness (Fig 6A, 6C, 6E and 6F), Shannon diversity (Fig 6B, 6D and 6G), and evenness (Fig 6H).

Discussion

We observed relatively greater species richness (234 vascular plant species) in the Arjo-Diga forest than in other similar studies conducted in Ethiopia, e.g., in Masha forest (130 species[44]; Jibat forest, 183 species [45]; Komto forest, 180 species [46]; Belete forest, 157 species [47]; Gelesha forest, 157 species [48]; Gendo forest, 168 species [49]; Agama forest, 162 species [50]; and Gerba Dima forest, 180 species [23]. However, the species richness of the study forest was lower than that reported by Kelbessa and Soromessa [51] in the Bonga forest (243 species). The variation in species composition observed between different forests can be attributed to the number of plots sampled, and their size may, to some extent, illustrate the heterogeneity of species richness. A study by Yirga et al. [52] revealed that forests subjected to significant human interference and disturbance tends to have lower species richness than others. Thus, the present study showed that the Arjo-Diga forest has a greater species composition than similar vegetation types in Ethiopia. Asteraceae and Fabaceae, Rubiaceae, Euphorbiaceae, Lamiaceae, Acanthaceae, and Poaceae are the top ten most species-rich families in many Neotropical forests [53], flora areas [54] and other moist Afromontane forests of southwestern Ethiopia [23,47,52]. Thus, the dominance of these families in the Arjo-Diga Forest agreed with their general dominance in the flora area and tropical forests. The dominance of these families could be attributed to their adaptation and colonization of different ecological niches based on their efficient pollination, dispersal, and germination mechanisms [55]. For instance, Fabaceae species possess various advantageous traits, such as seed resistance to predators, the ability to recover leaves and branches after defoliation, and the ability to germinate rapidly in the presence of moisture [56]. The high herbaceous species recorded are more likely to be explained by the open nature of the vegetation canopy, which allowed ground-level plants to grow freely. This observation aligned with the findings reported by Murphy and Lugo [57], who noted that the abundance of herbaceous species tended to be inversely related to the degree of canopy cover in the vegetation. The dominance of shrubby species in moist Afromontanae forests is due to the selective cutting of trees [47,58], and other anthropogenic factors cause the dominance of herbaceous species in a specific area.

Approximately 8.54% of the plant species are endemic to Ethiopia and Eritrea. This is lower than the previously reported 10–15% endemism in dry Afromontane forests [59]. The lower proportion of endemic plant species observed in the forest is attributed to the significant disturbances from human activities and livestock grazing in the study area. Ethiopia’s moist Afromontane forest vegetation faces considerable environmental stress [29,60]. Consistent with this finding, other studies [61] have also reported a low occurrence of endemic plant species in moist Afromontane forests. Adopting an ecosystem-based approach to biodiversity conservation and participatory forest management holds tremendous potential for safeguarding numerous rare and endemic species [62,63].

Plant community types

Hierarchical cluster analysis identified five distinct plant communities in the study area. However, communities 2, 3, and 4 share overlapping elevation ranges. Elevation is a complex gradient encompassing various environmental factors, including topography, climate, and soil variables [64]. Consequently, isolating other environmental factors becomes challenging due to the interrelated nature of these variables.

The study revealed that each identified plant community had a different floristic composition, and this variation could be due to differences in environmental factors. A survey by Adal [65] reported that differences in species composition among plant communities may be associated with environmental factors. However, it is essential to note that species diversity and richness were not uniform across plant communities. There were inherent differences in these measurements between the different plant communities, suggesting unique ecological characteristics and conditions within each community. For example, the study revealed that communities 2 and 4 had high species richness and diversity. In contrast, community 3 had the lowest species richness and diversity, likely due to the influence of various human activities in that area, including livestock grazing, charcoal production, proximity to human settlements, and firewood collection [66]. The possible reason for community three’s high species diversity and richness may be its location within the middle altitudinal range from 1500 to 1700 m.a.s.l. This intermediate altitudinal habitat appears to provide favorable conditions that enable the rapid acquisition of resources and support the flourishing growth of a diverse array of plant species within this community.

Anthropogenic factors are major drivers of global biodiversity change [67]. Some plant species may experience a steady or more rapid deterioration in their environmental conditions due to changes in land-use practices, which could decrease their abundance and distribution. For example, over the last 20 years, the forest coverage in the Diga district has decreased due to farming, grazing, and settlement [26]. Therefore, the alterations in anthropogenic land use are likely to influence the composition of the plant community in the present study, resulting in changes in both plant richness and diversity.

The analysis of Sorensen’s similarity coefficient index revealed a significant level of similarity in species composition among three plant communities, Community 1, Community 2, and Community 4 because they share similar locations and environmental factors, such as soil characteristics and topography [68]. Community 5 is located at a lower altitude (1470 m.a.s.l.) with low organic matter content, soil nutrients, and moisture content, which may result in lower floristic similarity than other plant community types (communities 1, 2, and 4).

Environmental variables and plant community relationships

Understanding the relationships between plant community composition and environmental variables is crucial for understanding community patterns in forest ecosystems [69,70]. The species composition of plant communities is influenced by several environmental factors, such as soil, geography, climate, and human disturbances [62,71]. Several ecological studies conducted in Ethiopia have reported that environmental variables are essential for shaping plant communities [38,62,72,73].

Canonical correspondence analysis (CCA) result analysis revealed that the plant communities in the study forest were strongly influenced by topographic factors such as altitude and slope, as well as edaphic variables such as pH, cation exchange capacity (CEC), and total nitrogen (TN). Additionally, anthropogenic disturbances were found to impact plant communities significantly. Specifically, CCA axis 1 was correlated with disturbances, while CCA axis 2 was correlated with altitude, CEC, pH, and TN. The second axis (CCA) accounted for approximately 13% of the total variance, while the first axis (CCA) explained 30% of the variance. CCA1 and CCA2 accounted for approximately 43% of the total variance (inertia). These findings indicate that elevation, CEC, TN, soil pH, and disturbance play crucial roles in influencing the distribution of plant species and the formation of plant communities in the study area. These results align with previous research emphasizing the significant impact of topographic and soil variables on plant species distribution and community formation [72,74,75].

Elevation plays a crucial role in accounting for differences in the distribution of plant species and the formation of plant communities, with some communities showing overlapping characteristics. This can be attributed to the gradual changes in environmental variables that occur along the gradient of elevation [76]. Similar studies conducted by researchers in various regions of Ethiopia have also found elevation to be an important topographic variable in determining patterns of vegetation distribution.

Edaphic factors (soil variables), such as TN, soil pH, and CEC, also significantly affected the growth and distribution of the plant communities in this study. Changes in soil parameters exert a substantial influence on the development of plant communities [77]. Additionally, the chemical and physical attributes of the soil are interconnected with its inherent characteristics, thereby affecting the composition of plant species and the distribution of higher vascular plants [78]. For instance, TN explained a significant variation in species composition within communities 1 and 3 (Fig 4) due to its positive effects on certain highly competitive plants, leading to the exclusion of species in competition. The findings of this study align closely with the results of a previous study conducted by Rawal [79], which also reported a negative relationship between TN levels and species diversity in plant communities within Pennsylvania forests. Similarly, a study by Shen et al. [80] reported that TN deposition influences plant community composition in European acidic grassland ecosystems. CEC was also a significant factor in explaining the differences in species composition between communities 1 and 2 in the current study. Similar to our results Zheng et al. [81] reported that CEC affects tree species in a plant community by affecting soil fertility. In addition, Bekele [72] found that CEC had a positive and significant impact on the species composition of the plant community on the central plateau of Shewa, Ethiopia. The results of this study suggest that the structure of plant communities is significantly influenced by soil chemical and physical properties.

Soil pH is a crucial factor that shapes the soil’s biogeochemical processes, which directly affects the composition and diversity of plant communities and their productivity [82]. This study found plant community type 4 in soil with a pH of 4.8. At this low pH, the availability of essential macronutrients, such as nitrogen, phosphorus, and potassium, is reduced, leading to nutrient deficiencies and stunted plant growth and development within the community. Several studies have also shown that soil pH can influence nutrient availability, ultimately affecting the uptake of vital nutrients for plant growth and development [8385]. However, it is essential to note that the availability of specific nutrients due to pH can adversely affect particular plants, as some nutrients can be toxic to them [86,87].

In addition to topographic and edaphic variables, anthropogenic disturbances, including tree logging, cattle grazing, and firewood collection, were identified as significant factors influencing species distribution patterns and community formation in the current study. The observed effects can be attributed to alterations in species richness, diversity, distribution patterns, and vegetation structure within the ecosystem due to disturbances [88,89]. The present study revealed that community 5 experienced the highest level of disturbance, primarily due to its proximity to neighboring agricultural activities and human settlements. Consequently, this disturbance led to a reduction in species richness within the plant communities. Additionally, a study revealed the presence of two local spice species (Piper capense and Aframomum corrorima), which are wild spices, in the sampled plots, indicating the presence of human intervention. Similarly, a study conducted by Tabarelli et al. [90] in tropical forests revealed that disturbances negatively impact seed dispersal and seedling formation, leading to changes in the distribution patterns of plant communities in these ecosystems.

Based on the simple regression analysis, we discovered a significant relationship between environmental variables and both species richness and species diversity. Specifically, altitude was significantly associated with species richness and diversity in this study. Altitudinal gradients are typically linked to variations in precipitation and temperature [91,92]. The observed pattern of species richness, characterized by a peak followed by a decrease, suggested that it may be influenced by the combined effects of local physical factors, such as soil properties, along with nonrandom fluctuations in temperature and precipitation along the elevation gradient.

Slope also plays a significant role in determining plant distribution due to its impact on the accumulation and export of soil nutrients. Previous research conducted by Zhang et al. [93] has shown that plant diversity is influenced by slope, as the lower part of the slope provides a favorable habitat with rich soil and water conditions, resulting in high plant diversity. Conversely, steeper slopes exhibit poor soil and water conditions, leading to low plant diversity. Other studies, such as [74,94], have demonstrated that slope gradients significantly impact species diversity and evenness by affecting crucial ecological factors such as humidity, heat, light intensity, and soil conditions. Several studies have also reported that a greater slope inclination exacerbates conditions that prevent competitive species from monopolizing resources [9597]. This phenomenon increases plant diversity, as broader species can coexist in challenging environments.

Correlations among environmental variables

In the Arjo-Diga forest, SOC was positively correlated with altitude, suggesting that SOC values increase with increasing altitude. The influence of altitude on plant communities is complex and likely indirect. Typically, temperature decreased with increasing altitude, while precipitation showed an upward trend. These climatic changes along elevation gradients affect vegetation composition and productivity and subsequently affect the amount and turnover of SOC [98]. The decrease in temperature associated with higher altitudes is likely to result in lower SOC turnover rates and possibly an increase in SOC levels. This temperature-related effect can influence the accumulation and stability of soil organic carbon and contribute to higher SOC at higher altitudes [99]. A study in the Gerba-Dima forest by Dibaba et al. [100] also supported the positive correlation between altitude and SOC. However, it is important to note that a study by Shapkota and Kafle [101] reported contradictory results, as they reported a decrease in SOC with increasing altitude. This discrepancy could be due to reduced decomposition rates associated with organic carbon production and long-term accumulation. Despite this discrepancy, the current study confirms that elevation is a reliable indicator of forest soil organic carbon content.

Moreover, a positive correlation was observed between the cation exchange capacity (CEC) and altitude. This association could be explained by the higher vegetation density at higher altitudes, which leads to increased organic matter production and, consequently, higher CEC [102]. Similarly, a study on tea plantations in Indonesia reported that adding organic matter to the soil can improve soil CEC. However, Zhang et al. [78] have reported a negative correlation between CEC and SOC, as decreased soil organic matter (SOM) decomposability leads to decreased CEC. SOC and TN exhibit a positive correlation due to their common origin in organic matter. Nitrogen is released as SOM decomposes, increasing the TN content in soils with high SOC. Furthermore, there is a negative correlation between soil pH and SOC, as soil pH plays a crucial role in regulating the diversity of microbial communities that affect the rate of SOC degradation. By understanding the interrelationships among these soil properties, appropriate soil management practices can be implemented to enhance soil fertility and support diverse plant communities.

Conclusion

This study investigated the floristic composition, species diversity, and relationships between plant communities and environmental variables in the Arjo-Diga forest. Five distinct plant community types were identified via agglomerative hierarchical cluster analysis, each exhibiting different diversity index values. Community type 5 demonstrated the highest species richness and diversity among the identified types. Altitude was recognized as the most significant factor influencing species composition, diversity, and community formation, followed by cation exchange capacity (CEC), total nitrogen (TN), and disturbance. These factors played crucial roles in shaping the characteristics of the plant communities and their associated diversity. Considering the combined effects of various environmental factors is vital for a comprehensive understanding of the variations in species richness, diversity, and evenness within plant community types and the distribution of plant species in a specific area. This study also highlighted the substantial impact of anthropogenic disturbances and the strong dependence of the local community on forest resources. Consequently, conservation efforts should prioritize these areas to safeguard ecologically important species, including the twenty endemic taxa identified. These findings provide valuable insights for guiding conservation and management practices in the Arjo-Diga Forest.

Supporting information

S1 Table. Floristic list of species in Arjo-Diga forest.

(DOCX)

pone.0307888.s001.docx (94.6KB, docx)
S2 Table. Value of the indicator species in identified plant communities and their significant p value.

(DOCX)

pone.0307888.s002.docx (34.6KB, docx)

Acknowledgments

The authors would like to express their deepest gratitude to the Diga District Agriculture and Rural Development Department and the local community surrounding the forest for their invaluable support in field data collection. In addition, the authors would like to thank the anonymous reviewers of PLOS ONE for their valuable comments and feedback.

Data Availability

All relevant data are within the paper and its Supporting Information files.

Funding Statement

The author(s) received no specific funding for this work.

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Decision Letter 0

Bhoj K Acharya

18 May 2023

PONE-D-23-07720Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia.PLOS ONE

Dear Dr. berihun,

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Reviewers' comments:

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Reviewer #1: No

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: Yes

Reviewer #2: Yes

**********

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Reviewer #1: No

Reviewer #2: Yes

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5. Review Comments to the Author

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Reviewer #1: The work conducted by the authors is appreciated. However, the current draft of the manuscript is lacking the standards of the journal and it looks prepared in hurried manner. Number of typos are clearly visible throughout the submitted manuscript daft, a few of them are marked in the attached manuscript draft. Most of figures does not possess figure legends. The manuscript needs a major revision in terms of its presentation, prior to its consideration for the publication by the journal.

Thank you

Reviewer #2: The MS is interesting and readable but it needs to be improved. I have provided report in the attachment. I suggest do some regression analysis with elevation data and draw the pattern.

Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia.

The present MS is about a unique type of study made by four Ethiopian authors. They focus on community analysis along 106 environmental gradients and seek to assess the impact of environmental factors on plant diversity (i.e., richness, diversity and evenness). The MS seems interesting and worth-full to read as well as I enjoyed reading it. The data have been collected by authors by sampling which add more value on the MS. This sort data base may add credit to define species diversity and composition theory in the field of ecology.

Beside this I found some weak points. The major weakness of the study is not focused well as per the aims of the study. When one going for studies the MS he or she may confuse whether it is local scale study or macro scale study. The Arjo-Diga forests have elevations gradients ranging from 1,200 to 2,220 meters above sea level and I ask the authors to show the patterns along the elevation gradient as well?

However, there are some more flaws in the MS which needs to be improved before publication of the MS. I have jotted down some of the flaws in the MS as below:

Abstract:

The abstract is relatively longer and it confusing so I suggest to rephrase it.

Introduction:

The study has two types of data set like elevation gradient which is macro scale factor and soil, disturbance etc are local scale factors so the authors have to discuss about these factors how they influence the species patterns. So they have to demonstrate how these factors are associated in their study.

Methodology

The Arjo-Diga has elevations ranging from 1,200 to 2,220 meters above sea level which quite long gradient so I suggest honoring this gradient. Why authors use DCA and CCA have to elaborate why this data set suitable to use these techniques. They have not provided DCA and CCA diagram and their interpretation.

Others part of methodology is okey.

Result:

The authors have identified 5 types of plant communities I still want to see these communities in the ordination diagram. So I want to ask to make CCA diagram how these five types of communities distributed?

Discussion

I am skeptical with the presentation of discussion. The subtopics which are provided are vague so I want to see discussion under the specific subheading like: relationship between species diversity and climatic variables or relationship between species composition and environmental factors etc…. and how their finding is similar or difference with others such studies in the different scales in the Ehiopia and other parts of Globe.

Conclusions

The conclusion rephrased as it is bit confusing!

In conclusion I found the MS is interesting but it still needs to be revised thoroughly.

**********

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Reviewer #1: No

Reviewer #2: Yes: Khem Raj Bhattarai

**********

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While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachment

Submitted filename: PONE-D-23-07720.pdf

Attachment

Submitted filename: Comment for authors-Report.docx

pone.0307888.s004.docx (13.1KB, docx)
PLoS One. 2024 Aug 6;19(8):e0307888. doi: 10.1371/journal.pone.0307888.r002

Author response to Decision Letter 0


30 Jul 2023

we adressed all comment and suggestion by editor and two reviwers and upload it separately

Attachment

Submitted filename: Reviwer two response.docx

pone.0307888.s005.docx (19.5KB, docx)

Decision Letter 1

Bhoj K Acharya

14 Sep 2023

PONE-D-23-07720R1Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia.PLOS ONE

Dear Dr. Berihun,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The revised version was reviewed by three experts (earlier two reviewers and one additional reviewer). All of them have positively commented on the MS but  there are few important aspects that need further improvement. Reviewer 3 have given some useful comments for improvement, and hence, authors are requested to critically look into the comments and revise the MS carefully. Please also look for typos, grammar, formats (including maps, figures and tables) as well as uniformity in presentation. 

Please submit your revised manuscript by Oct 29 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Bhoj Kumar Acharya, PhD

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

Reviewer #3: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The revised manuscript looks in good shape and authors have adequately addressed endorsements in the manuscript.

A small correction needs to be incorporated in the manuscript.

Instead to A study by [7] found different patterns of species richness along different elevation gradients.

authors should write A study by Pandey et al [7] found different patterns of species richness along different elevation gradients.

Rest is Ok.

With Best Regards

Reviewer #2: The MS has been improved but I am still skeptical with MAP showing the location of Ethiopia in the Africa.

Reviewer #3: The study titled "Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia" aims to examine three critical points.

(1) the floristic composition and diversity of the Arjo Diga forest,

(2) the influence of environmental variables on the characteristics of plant diversity

(Richness, variety, and uniformity)

(3) Investigate the relationship between plant community types and environmental variables.

Such a kind of study, especially from the underrepresented areas, is essential and requires our attention. This manuscript has valuable finding which is vital for protecting existing plant species in the Arjo-Diga forest in Western Ethiopia.

The authors have put a reasonable effort into addressing reviewers' comments; however, there is a scope to make more corrections, which can be quickly addressed and will improve the manuscript's readability. The discussion sections require some improvements.

While revising, please be careful of typos; I have highlighted some of them. Also, edit the tables and figures following a similar format throughout the manuscript.

Here are my detailed comments.

Abstract:

L17-18, The plant family information is in between sentences, which discusses plant communities. The author can start with plant families, followed by another sentence about plant communities or vice versa.

Introduction:

The full form of TN and CEC needs to be included in the introduction.

L72-77 It would be nice if author could provide references for the following sentences

Materials and Methods

L113 Here, the author may introduce meters above sea level abbreviation as (m.a.s.l.), which can be used for the rest of the sections.

Throughout this section, authors can cite the references directly instead of using according to ……

Ethical statement

Although it is an important point, I am unsure if the ethical statement must be a part of the methodology section.

If it is only about the permits/permission the authors required for the sample collection, this will fit well in the acknowledgements.

Methods of data collection

L162: Use abbreviations (m.a.s.l.)

L165: Does it mean that out of 72 plots, a single plot size was 30 m x 30 m (900 m2) and inside each such plots authors also laid 5 m x 5 m (25 m2) and five 2 m x 2 m (4 m2) to record other life forms such as shrubs and herbs? If it is so, then it needs to be rewritten. Also, unlike herbs, how many 5 m x 5 m (25 m2) were laid in each plot needs to be clearly mentioned.

L169: Does it mean that voucher specimens per species were collected from all plots for unidentified/identified species?

Environmental Data

L179: Won’t the soil samples be more than 72? If it is collected from five different locations at each 1 m x 1 m subplot. Please clarify.

L181 airdried in natural conditions? Or a hot air oven?

L184 The full form and abbreviations of TN and CEC should be mentioned in the introduction.

L191-194: It will be easier for a reader to understand the methodology if we give more information than just citing previous papers. The scale looks interesting, but it will be more apparent if the authors briefly describe the signs of disturbance that were considered for data collection. For example, the presence or absence of cattle dung? Proximity to the forests?

Also, reading the discussion, human-caused disturbance is one of the major causes of species loss, so adding more information to this section would be worthwhile.

Results

Table 2: Having the full form of the floristics regions in the caption will be good.

Also, were any of these species endemic? Will it be possible to add a row showing whether these are endemic? Ignore this comment if endemic species are listed elsewhere in another table.

L266: Package information and its reference must be mentioned in the methods/analysis section, not the results section.

L370: Delete however and use while to connect both the sentences

L373 attitude?

L375 axes are 0.3504 and 0.2346 ….. follow the similar no of digits after

the decimal points for the entire manuscript.

Table 7 Altitude (m a s l) needs to be replaced with m.a.s.l.

Also, the row title is in bold, while the rest of the tables are not; please follow the same formatting style.

The current file shows all the figures as Fig 1, which needs to be clarified. Is it the formatting issue?

Kindly have a look at it and make the required changes.

Fig - Dendrogram of vegetation data from agglomerative hierarchical cluster analysis-

In this figure, the legend and the caption for the y and x axes need a larger font size; it is now difficult to read.

Fig- Regression analysis along altitude, slope, TN, and disturbance.. Species richness ----- For this figure, the significance can be mentioned

at a similar location for all figures, towards the bottom right or top right. That will make the figure look clean and easy to read. Furthermore, please follow similar width and breadth sizes for all the figures.

Fig 1. Influence of environmental variables on plant community types- here, please mention the plant community types.

Discussion

The first paragraph of the discussion should help the reader recollect your aims or the questions addressed, followed by the data used and the results found. Overall, the first paragraph of the discussion sections will lead to the remaining section of the discussion. I wonder if the comparison with the other forests at the beginning of the discussion makes any sense. It distracts the readers from the main questions.

Either remove it or reshuffle the flow of this section.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Dr. Aseesh Pandey

Reviewer #2: Yes: Khem Raj Bhattarai

Reviewer #3: Yes: SHWETA BASNETT

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

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Attachment

Submitted filename: Comments_Sep_23.docx

pone.0307888.s006.docx (16.6KB, docx)
PLoS One. 2024 Aug 6;19(8):e0307888. doi: 10.1371/journal.pone.0307888.r004

Author response to Decision Letter 1


18 Oct 2023

We thank all three reviewers who gave us very constructive comments to better improve our manuscript. Based on the reviewers' comments and suggestions, we consider all the three reviewers' comments and suggestions and attach them to the three reviewers individually.

Attachment

Submitted filename: Reviwer #3 response.docx

pone.0307888.s007.docx (24.4KB, docx)

Decision Letter 2

Bhoj K Acharya

25 Oct 2023

PONE-D-23-07720R2Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia.PLOS ONE

Dear Dr. Berihun,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The MS is significantly improved compared to previous version but still there are issues that needs to be addressed. Please look into the comments of Reviewer 2 on Map of the study area and all the comments of Reviewer 3. Revise the MS carefully and critically based on the comments. Please look into English Grammar, Typos and formatting of text as well as tables and figures. 

Please submit your revised manuscript by Dec 09 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Bhoj Kumar Acharya, PhD

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2024 Aug 6;19(8):e0307888. doi: 10.1371/journal.pone.0307888.r006

Author response to Decision Letter 2


4 Dec 2023

We have submitted the revised manuscript as per the comments provided by the editors,and reviewers . Thank you for your guidance and feedback throughout the review process. We appreciate the opportunity to improve our manuscript and address the concerns raised

Attachment

Submitted filename: Reviwer #3 response.docx

pone.0307888.s008.docx (26.2KB, docx)

Decision Letter 3

Bhoj K Acharya

18 Dec 2023

PONE-D-23-07720R3Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia.PLOS ONE

Dear Dr. Berihun,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The MS is improved compared to previous version but still there are series of issues. Please look into comments from the editor in the attached MS. Please look into the comments thoroughly and revise the MS. Although the MS has undergone several rounds of review but many of the comments are still not addressed. Hence, this is the last chance for revision, and if the MS is not carefully revised there may be a possibility of rejection without further review.

Please submit your revised manuscript by Feb 01 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Bhoj Kumar Acharya, PhD

Academic Editor

PLOS ONE

Additional Editor Comments: 

The MS is improved compared to previous version but still there are series of issues. Please look into comments in the attached MS. Please look into the comments thoroughly and revise the MS. Although the MS has undergone several rounds of review but many of the comments are still not addressed. Hence, this is the last chance for revision, and if the MS is not carefully revised there may be a possibility of rejection without further review.

[Note: HTML markup is below. Please do not edit.]

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachment

Submitted filename: PONE-D-23-07720_R3_Editor Comments.pdf

pone.0307888.s009.pdf (4.8MB, pdf)
PLoS One. 2024 Aug 6;19(8):e0307888. doi: 10.1371/journal.pone.0307888.r008

Author response to Decision Letter 3


16 Feb 2024

Dear Editor,

We sincerely appreciate the valuable feedback provided by the editors. Taking their comments into careful consideration, we have made significant improvements to the manuscript. The revised version incorporates the suggested changes and addresses the editors' concerns. We are immensely grateful to the editors for their insightful comments and suggestions, as they have undoubtedly enhanced the quality of this study.

In response to the specific comments raised by the editors, we have provided a detailed point-by-point response below

Comment from editors

Introduction

Comment 1: Line 114-116.what is the difference between objective 1 and 2?, I think these question is objective 2 and 3 because the highlight yellow color is objectives 2 and 3. Therefore we respond objectives highlighted by yellow color objectives 2 and 3.

Response 1. Thank you for pointing this out. The two objectives are similar, so we have merged them based on the editor's comment.

Materials and methods

Comment 2: Line 129 pleases check. This is not the way of writing. There are so many such issues in the MS, and the problem was pointed by the reviewers but still not solved.

Response 2: We apologize for the mistakes we made. We have now made the necessary corrections based on the editor's comment.

Comment 3: Line 147 figure legends should be more elaborative which should stand alone

Response 3: Thank you. Based on the comment, we have elaborated the figure legends to make them more comprehensive and able to stand alone.

Comment 4: Line 206-2016 this should be a part of data analysis but not the data collection. Please rectify

Response 4: Thank you for pointing that out. Based on the comment, we have moved the paragraph to the data analysis section.

Data analysis

Comment 5: line 239 Where is S in the formula? Please check. Moreover, all these formulae are universally known and no need to provide in the MS

Response 5: The letter 'S' in the summation formula represents a variable. To improve clarity, we were provided a list of abbreviations and their corresponding meanings. This would enhance understanding of the variables and their significance within the study..

Comment 6: Line 252-255 It is already known to the scientists

Response 6: Thank you for your feedback. We have acknowledged and modified the sentence accordingly.

Comment 7: Line 259-260 This is also not a part of ordination???

Response 7: Thank you for your feedback. We have revised the sentence to remove it from the section on ordination and present it as an independent statement, improving readability of the text

Result

Comment 8: Line 276 the titles should be elaborative in nature which should stand alone. Please check all the tables carefully

Response 8: Thank you for your feedback. We agree that the table captions should be more comprehensive and able to stand alone. We have also provided the full meaning of table abbreviations

Comment 9: Line 293- 295 Please see my comments for title details

Response 9: Thank you for your feedback. We have carefully reviewed the titles of the tables and made the necessary corrections based on your comments..

Comment 10: line 297-298 This table can be shifted as supplementary material

Response 10: Thank you for your suggestion. We agree and have moved the tables to the supplementary material.

Comment 11.line 363-381 This section looks so weak and does not add any value to the MS. Combine this section and similarity and make a new section as community parameters and write in a more advance way.

Response 11: Thank you for your feedback. As suggested, we have combined and rewritten these sections to create a new section on community parameters, which provides a more advanced and valuable analysis.

Comment 12. Line 386 please check

Response 12. We have reviewed and rewritten the whole paragraph to enhance its quality.

Comment 13: Thank you for your feedback. We have carefully reviewed the sections and agree that they are similar. We will combine them accordingly.

Response 13: Thank you pointing this out. As you said it is almost similar with the above section and agreed combine them

Comment 14..Line 466, I think this analysis is just a repetition of the results presented in earlier section. Regression and correlation analysis both are not needed for the same datasets

Response 14: We appreciate the editor's feedback. After careful consideration, we agree that the analysis in this section may overlap with the earlier results. To avoid redundancy, we will exclude the regression and correlation analysis for the same datasets. Thank you for bringing this to our attention, and we will revise the section accordingly.

Discussion

Comment 15: line 486-487, Discussion will change after the modification of the results. Hence, revise the discussion accordingly

Response 15: We understand that modifying the results will impact the discussion section. We have revised the discussion to reflect the changes made in the results section. By excluding redundant ideas and sentences, we have focused the discussion on the most relevant findings and their implications. Thank you for your guidance, and we have made the necessary adjustments to the discussion section.

Comment 16: line 512 ?????

Response 16: Thank you for pointing that out. We have corrected the miswrittenletter "t" before reference [64].

Comment 17: Line 512 this finding is consistent with the findings of Please see. This is not the correct way of writing scientific text. Many such problems occur in the text. Please see thoroughly and rectify

Response 17: Thank you for bringing this to our attention. We apologize for the incorrect usage in the scientific text. We will thoroughly review the entire document and rectify any similar issues. As per your suggestion, we will revise the text appropriately to maintain scientific rigor and clarity. We appreciate your guidance, and we will make the necessary revisions accordingly.

Comment 18: ??

Response 18: Thank you for your feedback. We apologize for the incorrect usage in the text. We were revised the sentence.

Comment 19: I do not see any significant addition of knowledge from this section. Please rewrite

Response 19: Thank you for your feedback. We will carefully revise this section to ensure that it adds significant knowledge and contributes to the overall findings of the study.

Decision Letter 4

Bhoj K Acharya

28 May 2024

PONE-D-23-07720R4Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia.PLOS ONE

Dear Dr. Berihun,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

This MS has undergone four rounds of revision but still some of the concerns has not been addressed well. Please look into the comments from one reviewer in this round of review and revise the MS accordingly. Additionally, my earlier comments on reference citation pattern and English language has been addressed partially only. I noticed that there are lots of problems with reference citation pattern and English language (especially in the discussion section). Kindly look them thoroughly, and make a critical revision. Hope authors carefully look into the entire MS, and improve the content in this round of revision.

Please submit your revised manuscript by Jul 12 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Bhoj K. Acharya, PhD

Academic Editor

PLOS ONE

Additional Editor Comments:

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #4: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #4: Partly

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #4: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #4: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #4: No

**********

6. Review Comments to the Author

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Reviewer #4: Now submitted the comments, need to wait for the authors response. Objectives need to be clearly defined, further for association studied simple multiple regression could be used. The manuscripts need lots of revision to make the message clear and results needs to be arranged accordingly. Statistical analysis are fine but methodology needs to be elaborated. Data on tree density, volume, and other information could be made available to assess the dominance in a community. There is a lot of scope for improvement and presentation of data in the manuscripts.

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Reviewer #4: Yes: BHAUSAHEB TAMBAT

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Attachment

Submitted filename: Tambat_Suggestions_PONE-D-23-07720R4.docx

pone.0307888.s010.docx (13.8KB, docx)
PLoS One. 2024 Aug 6;19(8):e0307888. doi: 10.1371/journal.pone.0307888.r010

Author response to Decision Letter 4


10 Jul 2024

We have incorporated the comments, questions, and suggestions raised by both the editors and reviewers. Each of these points has been addressed independently in our resubmission.

Decision Letter 5

Bhoj K Acharya

15 Jul 2024

Topography factors and soil variables drive the plant community distribution pattern and species richness in the Arjo Diga forest in western Ethiopia.

PONE-D-23-07720R5

Dear Dr. Berihun,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Prof. Bhoj K. Acharya

Academic Editor

PLOS ONE

Additional Editor Comments:

The authors have successfully revised the MS now but still there are issues with reference citation which needs to be solved.

For example:

L449: lower than that reported by [51] in the Bonga forest- You should write the name of the authors and then only you have to cite 51 in bracket

L451-452:  A study by[52] revealed that forests subjected: You should write the name of the authors and then only you have to cite 52 in bracket

Such issues are there in introduction, methodology and everywhere in the MS. Please check thoroughly while submitting final files to the journal.

Reviewers' comments:

Acceptance letter

Bhoj K Acharya

24 Jul 2024

PONE-D-23-07720R5

PLOS ONE

Dear Dr. Berihun Tenaw,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Prof. Bhoj K. Acharya

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Floristic list of species in Arjo-Diga forest.

    (DOCX)

    pone.0307888.s001.docx (94.6KB, docx)
    S2 Table. Value of the indicator species in identified plant communities and their significant p value.

    (DOCX)

    pone.0307888.s002.docx (34.6KB, docx)
    Attachment

    Submitted filename: PONE-D-23-07720.pdf

    Attachment

    Submitted filename: Comment for authors-Report.docx

    pone.0307888.s004.docx (13.1KB, docx)
    Attachment

    Submitted filename: Reviwer two response.docx

    pone.0307888.s005.docx (19.5KB, docx)
    Attachment

    Submitted filename: Comments_Sep_23.docx

    pone.0307888.s006.docx (16.6KB, docx)
    Attachment

    Submitted filename: Reviwer #3 response.docx

    pone.0307888.s007.docx (24.4KB, docx)
    Attachment

    Submitted filename: Reviwer #3 response.docx

    pone.0307888.s008.docx (26.2KB, docx)
    Attachment

    Submitted filename: PONE-D-23-07720_R3_Editor Comments.pdf

    pone.0307888.s009.pdf (4.8MB, pdf)
    Attachment

    Submitted filename: Tambat_Suggestions_PONE-D-23-07720R4.docx

    pone.0307888.s010.docx (13.8KB, docx)

    Data Availability Statement

    All relevant data are within the paper and its Supporting Information files.


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