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. 1992 Mar 1;282(Pt 2):495–500. doi: 10.1042/bj2820495

Importance of the His-298 residue in the catalytic mechanism of the Streptomyces R61 extracellular DD-peptidase.

A M Hadonou 1, M Jamin 1, M Adam 1, B Joris 1, J Dusart 1, J M Ghuysen 1, J M Frère 1
PMCID: PMC1130807  PMID: 1546964

Abstract

Among the active-site-serine penicillin-recognizing proteins, the Streptomyces R61 extracellular DD-peptidase is the only one to have a His-Thr-Gly sequence [instead of Lys-Thr(Ser)-Gly] in 'box' VII. The His residue was replaced by Gln or Lys. Both mutations induced a marked decrease in the rates of both tripeptide substrate hydrolysis and acylation by benzylpenicillin and cephalosporin C. The rate of hydrolysis of the thioester hippuryl thioglycollate was less affected. The most striking result was the disproportionate loss of transpeptidation properties by both mutants, indicating an important role of His-298 in this reaction. We believe that this result represents the first modification of a DD-peptidase leading to a specific decrease of the transpeptidation-to-hydrolysis ratio.

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Selected References

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  1. Adam M., Damblon C., Plaitin B., Christiaens L., Frère J. M. Chromogenic depsipeptide substrates for beta-lactamases and penicillin-sensitive DD-peptidases. Biochem J. 1990 Sep 1;270(2):525–529. doi: 10.1042/bj2700525. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Brannigan J., Matagne A., Jacob F., Damblon C., Joris B., Klein D., Spratt B. G., Frère J. M. The mutation Lys234His yields a class A beta-lactamase with a novel pH-dependence. Biochem J. 1991 Sep 15;278(Pt 3):673–678. doi: 10.1042/bj2780673. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. De Meester F., Joris B., Reckinger G., Bellefroid-Bourguignon C., Frère J. M., Waley S. G. Automated analysis of enzyme inactivation phenomena. Application to beta-lactamases and DD-peptidases. Biochem Pharmacol. 1987 Jul 15;36(14):2393–2403. doi: 10.1016/0006-2952(87)90609-5. [DOI] [PubMed] [Google Scholar]
  4. Dideberg O., Charlier P., Wéry J. P., Dehottay P., Dusart J., Erpicum T., Frère J. M., Ghuysen J. M. The crystal structure of the beta-lactamase of Streptomyces albus G at 0.3 nm resolution. Biochem J. 1987 Aug 1;245(3):911–913. doi: 10.1042/bj2450911. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Duez C., Piron-Fraipont C., Joris B., Dusart J., Urdea M. S., Martial J. A., Frère J. M., Ghuysen J. M. Primary structure of the Streptomyces R61 extracellular DD-peptidase. 1. Cloning into Streptomyces lividans and nucleotide sequence of the gene. Eur J Biochem. 1987 Feb 2;162(3):509–518. doi: 10.1111/j.1432-1033.1987.tb10669.x. [DOI] [PubMed] [Google Scholar]
  6. Frere J., Ghuysen J., Degelaen J., Loffet A., Perkins H. R. Fragmentation of benzylpenicillin after interaction with the exocellular DD-carboxypeptidase-transpeptidases of Streptomyces R61 and R39. Nature. 1975 Nov 13;258(5531):168–170. doi: 10.1038/258168a0. [DOI] [PubMed] [Google Scholar]
  7. Frère J. M., Ghuysen J. M., Iwatsubo M. Kinetics of interaction between the exocellular DD-carboxypeptidase-transpeptidase from Streptomyces R61 and beta-lactam antibiotics. A choice of models. Eur J Biochem. 1975 Sep 15;57(2):343–351. doi: 10.1111/j.1432-1033.1975.tb02307.x. [DOI] [PubMed] [Google Scholar]
  8. Frère J. M., Ghuysen J. M., Perkins H. R., Nieto M. Kinetics of concomitant transfer and hydrolysis reactions catalysed by the exocellular DD-carboxypeptidase-transpeptidase of streptomyces R61. Biochem J. 1973 Nov;135(3):483–492. doi: 10.1042/bj1350483. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Frère J. M., Ghuysen J. M. The direction of peptide trimer synthesis from the donor-acceptor substrate Nalpha-(acetyl)-Nepsilon-(glycyl)-L-lysyl-D-alanyl-D-alanine by the exocellular dd-carboxypeptidase-transpeptidase of Streptomyces R61. FEBS Lett. 1976 Mar 15;63(1):112–116. doi: 10.1016/0014-5793(76)80205-0. [DOI] [PubMed] [Google Scholar]
  10. Frère J. M., Joris B. Penicillin-sensitive enzymes in peptidoglycan biosynthesis. Crit Rev Microbiol. 1985;11(4):299–396. doi: 10.3109/10408418409105906. [DOI] [PubMed] [Google Scholar]
  11. Frére J. M., Leyh-Bouille M., Ghuysen J. M., Nieto M., Perkins H. R. Exocellular DD-carboxypeptidases-transpeptidases from Streptomyces. Methods Enzymol. 1976;45:610–636. doi: 10.1016/s0076-6879(76)45054-1. [DOI] [PubMed] [Google Scholar]
  12. Ghuysen J. M. Serine beta-lactamases and penicillin-binding proteins. Annu Rev Microbiol. 1991;45:37–67. doi: 10.1146/annurev.mi.45.100191.000345. [DOI] [PubMed] [Google Scholar]
  13. Herzberg O. Refined crystal structure of beta-lactamase from Staphylococcus aureus PC1 at 2.0 A resolution. J Mol Biol. 1991 Feb 20;217(4):701–719. doi: 10.1016/0022-2836(91)90527-d. [DOI] [PubMed] [Google Scholar]
  14. Jamin M., Adam M., Damblon C., Christiaens L., Frère J. M. Accumulation of acyl-enzyme in DD-peptidase-catalysed reactions with analogues of peptide substrates. Biochem J. 1991 Dec 1;280(Pt 2):499–506. doi: 10.1042/bj2800499. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Joris B., Ghuysen J. M., Dive G., Renard A., Dideberg O., Charlier P., Frère J. M., Kelly J. A., Boyington J. C., Moews P. C. The active-site-serine penicillin-recognizing enzymes as members of the Streptomyces R61 DD-peptidase family. Biochem J. 1988 Mar 1;250(2):313–324. doi: 10.1042/bj2500313. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Kelly J. A., Dideberg O., Charlier P., Wery J. P., Libert M., Moews P. C., Knox J. R., Duez C., Fraipont C., Joris B. On the origin of bacterial resistance to penicillin: comparison of a beta-lactamase and a penicillin target. Science. 1986 Mar 21;231(4744):1429–1431. doi: 10.1126/science.3082007. [DOI] [PubMed] [Google Scholar]
  17. Kelly J. A., Knox J. R., Zhao H., Frère J. M., Ghaysen J. M. Crystallographic mapping of beta-lactams bound to a D-alanyl-D-alanine peptidase target enzyme. J Mol Biol. 1989 Sep 20;209(2):281–295. doi: 10.1016/0022-2836(89)90277-5. [DOI] [PubMed] [Google Scholar]
  18. Marquet A., Frère J. M., Ghuysen J. M., Loffet A. Effects of nucleophiles on the breakdown of the benzylpenicilloyl-enzyme complex EI formed between benzylpenicillin and the exocellular DD-carboxypeptidase--transpeptiase of Streptomyces strain R61. Biochem J. 1979 Mar 1;177(3):909–916. doi: 10.1042/bj1770909. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Oefner C., D'Arcy A., Daly J. J., Gubernator K., Charnas R. L., Heinze I., Hubschwerlen C., Winkler F. K. Refined crystal structure of beta-lactamase from Citrobacter freundii indicates a mechanism for beta-lactam hydrolysis. Nature. 1990 Jan 18;343(6255):284–288. doi: 10.1038/343284a0. [DOI] [PubMed] [Google Scholar]
  20. Pratt R. F., Faraci W. S., Govardhan C. P. A direct spectrophotometric assay for D-alanine carboxypeptidases and for the esterase activity of beta-lactamases. Anal Biochem. 1985 Jan;144(1):204–206. doi: 10.1016/0003-2697(85)90106-x. [DOI] [PubMed] [Google Scholar]
  21. Taylor J. W., Ott J., Eckstein F. The rapid generation of oligonucleotide-directed mutations at high frequency using phosphorothioate-modified DNA. Nucleic Acids Res. 1985 Dec 20;13(24):8765–8785. doi: 10.1093/nar/13.24.8765. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Varetto L., Frère J. M., Ghuysen J. M. The importance of the negative charge of beta-lactam compounds for the inactivation of the active-site serine DD-peptidase of Streptomyces R61. FEBS Lett. 1987 Dec 10;225(1-2):218–222. doi: 10.1016/0014-5793(87)81161-4. [DOI] [PubMed] [Google Scholar]
  23. Varetto L., Frère J. M., Nguyen-Distèche M., Ghuysen J. M., Houssier C. The pH dependence of the active-site serine DD-peptidase of Streptomyces R61. Eur J Biochem. 1987 Feb 2;162(3):525–531. doi: 10.1111/j.1432-1033.1987.tb10671.x. [DOI] [PubMed] [Google Scholar]

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