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. 1990 Mar 15;266(3):853–861.

Beta-lactamases as fully efficient enzymes. Determination of all the rate constants in the acyl-enzyme mechanism.

H Christensen 1, M T Martin 1, S G Waley 1
PMCID: PMC1131217  PMID: 2158301

Abstract

The rate constants for both acylation and deacylation of beta-lactamase PC1 from Staphylococcus aureus and the RTEM beta-lactamase from Escherichia coli were determined by the acid-quench method [Martin & Waley (1988) Biochem. J. 254, 923-925] with several good substrates, and, for a wider range of substrates, of beta-lactamase I from Bacillus cereus. The values of the acylation and deacylation rate constants for benzylpenicillin were approximately the same (i.e. differing by no more than 2-fold) for each enzyme. The variation of kcat./Km for benzylpenicillin with the viscosity of the medium was used to obtain values for all four rate constants in the acyl-enzyme mechanism for all three enzymes. The reaction is partly diffusion-controlled, and the rate constant for the dissociation of the enzyme-substrate complex has approximately the same value as the rate constants for acylation and deacylation. Thus all three first-order rate constants have comparable values. Here there is no single rate-determining step for beta-lactamase action. This is taken to be a sign of a fully efficient enzyme.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Albery W. J., Knowles J. R. Efficiency and evolution of enzyme catalysis. Angew Chem Int Ed Engl. 1977 May;16(5):285–293. doi: 10.1002/anie.197702851. [DOI] [PubMed] [Google Scholar]
  2. Albery W. J., Knowles J. R. Evolution of enzyme function and the development of catalytic efficiency. Biochemistry. 1976 Dec 14;15(25):5631–5640. doi: 10.1021/bi00670a032. [DOI] [PubMed] [Google Scholar]
  3. Albery W. J., Knowles J. R. Free-energy profile of the reaction catalyzed by triosephosphate isomerase. Biochemistry. 1976 Dec 14;15(25):5627–5631. doi: 10.1021/bi00670a031. [DOI] [PubMed] [Google Scholar]
  4. Ambler R. P. The structure of beta-lactamases. Philos Trans R Soc Lond B Biol Sci. 1980 May 16;289(1036):321–331. doi: 10.1098/rstb.1980.0049. [DOI] [PubMed] [Google Scholar]
  5. Baldwin G. S., Edwards G. F., Kiener P. A., Tully M. J., Waley S. G., Abraham E. P. Production of a variant of beta-lactamase II with selectively decreased cephalosporinase activity by a mutant of Bacillus cereus 569/H/9. Biochem J. 1980 Oct 1;191(1):111–116. doi: 10.1042/bj1910111. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Bicknell R., Waley S. G. Cryoenzymology of Bacillus cereus beta-lactamase II. Biochemistry. 1985 Nov 19;24(24):6876–6887. doi: 10.1021/bi00345a021. [DOI] [PubMed] [Google Scholar]
  7. Blacklow S. C., Raines R. T., Lim W. A., Zamore P. D., Knowles J. R. Triosephosphate isomerase catalysis is diffusion controlled. Appendix: Analysis of triose phosphate equilibria in aqueous solution by 31P NMR. Biochemistry. 1988 Feb 23;27(4):1158–1167. doi: 10.1021/bi00404a013. [DOI] [PubMed] [Google Scholar]
  8. Campbell J. I., Scahill S., Gibson T., Ambler R. P. The phototrophic bacterium Rhodopseudomonas capsulata sp108 encodes an indigenous class A beta-lactamase. Biochem J. 1989 Jun 15;260(3):803–812. doi: 10.1042/bj2600803. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Carrey E. A., Pain R. H. Conformation of a stable intermediate on the folding pathway of Staphylococcus aureus penicillinase. Biochim Biophys Acta. 1978 Mar 28;533(1):12–22. doi: 10.1016/0005-2795(78)90542-1. [DOI] [PubMed] [Google Scholar]
  10. Davies R. B., Abraham E. P. Separation, purification and properties of beta-lactamase I and beta-lactamase II from Bacillus cereus 569/H/9. Biochem J. 1974 Oct;143(1):115–127. doi: 10.1042/bj1430115. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. De Meester F., Frère J. M., Waley S. G., Cartwright S. J., Virden R., Lindberg F. 6-beta-Iodopenicillanate as a probe for the classification of beta-lactamases. Biochem J. 1986 Nov 1;239(3):575–580. doi: 10.1042/bj2390575. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Douzou P., Petsko G. A. Proteins at work: "stop-action" pictures at subzero temperatures. Adv Protein Chem. 1984;36:245–361. [PubMed] [Google Scholar]
  13. Duggleby R. G. Progress-curve analysis in enzyme kinetics. Numerical solution of integrated rate equations. Biochem J. 1986 Apr 15;235(2):613–615. doi: 10.1042/bj2350613. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Ellington A. D., Benner S. A. Free energy differences between enzyme bound states. J Theor Biol. 1987 Aug 21;127(4):491–506. doi: 10.1016/s0022-5193(87)80145-5. [DOI] [PubMed] [Google Scholar]
  15. Fisher J., Belasco J. G., Khosla S., Knowles J. R. beta-Lactamase proceeds via an acyl-enzyme intermediate. Interaction of the Escherichia coli RTEM enzyme with cefoxitin. Biochemistry. 1980 Jun 24;19(13):2895–2901. doi: 10.1021/bi00554a012. [DOI] [PubMed] [Google Scholar]
  16. Hardy L. W., Kirsch J. F. Diffusion-limited component of reactions catalyzed by Bacillus cereus beta-lactamase I. Biochemistry. 1984 Mar;23(6):1275–1282. doi: 10.1021/bi00301a040. [DOI] [PubMed] [Google Scholar]
  17. Hardy L. W., Kirsch J. F. pH dependence and solvent deuterium oxide kinetic isotope effects on Bacillus cereus beta-lactamase I catalyzed reactions. Biochemistry. 1984 Mar 13;23(6):1282–1287. doi: 10.1021/bi00301a041. [DOI] [PubMed] [Google Scholar]
  18. Herzberg O., Moult J. Bacterial resistance to beta-lactam antibiotics: crystal structure of beta-lactamase from Staphylococcus aureus PC1 at 2.5 A resolution. Science. 1987 May 8;236(4802):694–701. doi: 10.1126/science.3107125. [DOI] [PubMed] [Google Scholar]
  19. Kelly J. A., Knox J. R., Zhao H., Frère J. M., Ghaysen J. M. Crystallographic mapping of beta-lactams bound to a D-alanyl-D-alanine peptidase target enzyme. J Mol Biol. 1989 Sep 20;209(2):281–295. doi: 10.1016/0022-2836(89)90277-5. [DOI] [PubMed] [Google Scholar]
  20. Madgwick P. J., Waley S. G. beta-lactamase I from Bacillus cereus. Structure and site-directed mutagenesis. Biochem J. 1987 Dec 15;248(3):657–662. doi: 10.1042/bj2480657. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Martin M. T., Waley S. G. Kinetic characterization of the acyl-enzyme mechanism for beta-lactamase I. Biochem J. 1988 Sep 15;254(3):923–925. doi: 10.1042/bj2540923. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Mitchinson C., Pain R. H. Effects of sulphate and urea on the stability and reversible unfolding of beta-lactamase from Staphylococcus aureus. Implications for the folding pathway of beta-lactamase. J Mol Biol. 1985 Jul 20;184(2):331–342. doi: 10.1016/0022-2836(85)90384-5. [DOI] [PubMed] [Google Scholar]
  23. Persaud K. C., Pain R. H., Virden R. Reversible deactivation of beta-lactamase by quinacillin. Extent of the conformational change in the isolated transitory complex. Biochem J. 1986 Aug 1;237(3):723–730. doi: 10.1042/bj2370723. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Pratt R. F., McConnell T. S., Murphy S. J. Accumulation of acyl-enzyme intermediates during turnover of penicillins by the class A beta-lactamase of Staphylococcus aureus PC1. Biochem J. 1988 Sep 15;254(3):919–922. doi: 10.1042/bj2540919. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Samraoui B., Sutton B. J., Todd R. J., Artymiuk P. J., Waley S. G., Phillips D. C. Tertiary structural similarity between a class A beta-lactamase and a penicillin-sensitive D-alanyl carboxypeptidase-transpeptidase. 1986 Mar 27-Apr 2Nature. 320(6060):378–380. doi: 10.1038/320378a0. [DOI] [PubMed] [Google Scholar]
  26. Schowen K. B., Schowen R. L. Solvent isotope effects of enzyme systems. Methods Enzymol. 1982;87:551–606. [PubMed] [Google Scholar]
  27. Schultz S. C., Richards J. H. Site-saturation studies of beta-lactamase: production and characterization of mutant beta-lactamases with all possible amino acid substitutions at residue 71. Proc Natl Acad Sci U S A. 1986 Mar;83(6):1588–1592. doi: 10.1073/pnas.83.6.1588. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Sigal I. S., DeGrado W. F., Thomas B. J., Petteway S. R., Jr Purification and properties of thiol beta-lactamase. A mutant of pBR322 beta-lactamase in which the active site serine has been replaced with cysteine. J Biol Chem. 1984 Apr 25;259(8):5327–5332. [PubMed] [Google Scholar]
  29. Szawelski R. J., Wharton C. W. Kinetic solvent isotope effects on the deacylation of specific acyl-papains. Proton inventory studies on the papain-catalysed hydrolyses of specific ester substrates: analysis of possible transition state structures. Biochem J. 1981 Dec 1;199(3):681–692. doi: 10.1042/bj1990681. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Venkatasubban K. S., Schowen R. L. The proton inventory technique. CRC Crit Rev Biochem. 1984;17(1):1–44. doi: 10.3109/10409238409110268. [DOI] [PubMed] [Google Scholar]
  31. Virden R., Bristow A. F., Pain R. H. Reversible inhibition of penicillinase by quinacillin: evaluation of mechanisms involving two conformational states of the enzyme. Biochem Biophys Res Commun. 1978 Jun 14;82(3):951–956. doi: 10.1016/0006-291x(78)90875-6. [DOI] [PubMed] [Google Scholar]
  32. Waley S. G. Beta-lactamases: a major cause of antibiotic resistance. Sci Prog. 1988;72(288 Pt 4):579–597. [PubMed] [Google Scholar]
  33. Warshel A., Naray-Szabo G., Sussman F., Hwang J. K. How do serine proteases really work? Biochemistry. 1989 May 2;28(9):3629–3637. doi: 10.1021/bi00435a001. [DOI] [PubMed] [Google Scholar]
  34. Wharton C. W., Szawelski R. J. Half-time analysis of the integrated Michaelis equation. Simulation and use of the half-time plot and its direct linear variant in the analysis of some alpha-chymotrypsin, papain- and fumarase-catalysed reactions. Biochem J. 1982 May 1;203(2):351–360. doi: 10.1042/bj2030351. [DOI] [PMC free article] [PubMed] [Google Scholar]

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