Abstract
Caged dideoxyribosylthymine triphosphate, dideoxyadenosine triphosphate and arabinosylcytosine triphosphate were prepared in high yield by reaction with 1-(2-nitrophenyl)diazoethane at pH 4 and room temperature for 24 h. Synthesis of caged alpha-32P-labelled dideoxyadenosine triphosphate (approx. 5000 Ci/mmol) in 85% yield was achieved by a modification of the method used for the synthesis of the unlabelled compounds. ATP was shown to be an excellent buffer in the synthesis of alpha-32P-labelled material, and in caged form to be an effective carrier in h.p.l.c. purification. Preparative h.p.l.c. was used to achieve purification of unlabelled caged compounds to greater than 98% purity and 32P-labelled material to 97% purity. Photolysis of unlabelled and 32P-labelled caged compounds by using XeF-excimer laser irradiation at 351 nm was characterized by using difference spectrophotometry and h.p.l.c. analysis. The stability of caged dideoxyadenosine [a-32P]triphosphate in the presence of cultured mammalian cells was evaluated; the adenosine derivative is essentially stable for 1 h.
Full text
PDF





Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Dresler S. L. Comparative enzymology of ultraviolet-induced DNA repair synthesis and semiconservative DNA replication in permeable diploid human fibroblasts. J Biol Chem. 1984 Nov 25;259(22):13947–13952. [PubMed] [Google Scholar]
- Dresler S. L., Kimbro K. S. 2',3'-Dideoxythymidine 5'-triphosphate inhibition of DNA replication and ultraviolet-induced DNA repair synthesis in human cells: evidence for involvement of DNA polymerase delta. Biochemistry. 1987 May 19;26(10):2664–2668. doi: 10.1021/bi00384a002. [DOI] [PubMed] [Google Scholar]
- Dresler S. L., Roberts J. D., Lieberman M. W. Characterization of deoxyribonucleic acid repair synthesis in permeable human fibroblasts. Biochemistry. 1982 May 11;21(10):2557–2564. doi: 10.1021/bi00539a040. [DOI] [PubMed] [Google Scholar]
- Francis A. A., Snyder R. D., Dunn W. C., Regan J. D. Classification of chemical agents as to their ability to induce long- or short-patch DNA repair in human cells. Mutat Res. 1981 Sep;83(2):159–169. doi: 10.1016/0027-5107(81)90001-4. [DOI] [PubMed] [Google Scholar]
- Hanawalt P. C., Cooper P. K., Ganesan A. K., Smith C. A. DNA repair in bacteria and mammalian cells. Annu Rev Biochem. 1979;48:783–836. doi: 10.1146/annurev.bi.48.070179.004031. [DOI] [PubMed] [Google Scholar]
- Huberman J. A. New views of the biochemistry of eucaryotic DNA replication revealed by aphidicolin, an unusual inhibitor of DNA polymerase alpha. Cell. 1981 Mar;23(3):647–648. doi: 10.1016/0092-8674(81)90426-8. [DOI] [PubMed] [Google Scholar]
- Kaplan J. H., Forbush B., 3rd, Hoffman J. F. Rapid photolytic release of adenosine 5'-triphosphate from a protected analogue: utilization by the Na:K pump of human red blood cell ghosts. Biochemistry. 1978 May 16;17(10):1929–1935. doi: 10.1021/bi00603a020. [DOI] [PubMed] [Google Scholar]
- Lippke J. A., Gordon L. K., Brash D. E., Haseltine W. A. Distribution of UV light-induced damage in a defined sequence of human DNA: detection of alkaline-sensitive lesions at pyrimidine nucleoside-cytidine sequences. Proc Natl Acad Sci U S A. 1981 Jun;78(6):3388–3392. doi: 10.1073/pnas.78.6.3388. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McCray J. A., Herbette L., Kihara T., Trentham D. R. A new approach to time-resolved studies of ATP-requiring biological systems; laser flash photolysis of caged ATP. Proc Natl Acad Sci U S A. 1980 Dec;77(12):7237–7241. doi: 10.1073/pnas.77.12.7237. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McCray J. A., Trentham D. R. Properties and uses of photoreactive caged compounds. Annu Rev Biophys Biophys Chem. 1989;18:239–270. doi: 10.1146/annurev.bb.18.060189.001323. [DOI] [PubMed] [Google Scholar]
- Meldrum R. A., Shall S., Wharton C. W. Kinetics and mechanism of DNA repair. Evaluation of caged compounds for use in studies of u.v.-induced DNA repair. Biochem J. 1990 Mar 15;266(3):891–895. [PMC free article] [PubMed] [Google Scholar]
- Regan J. D., Setlow R. B. Two forms of repair in the DNA of human cells damaged by chemical carcinogens and mutagens. Cancer Res. 1974 Dec;34(12):3318–3325. [PubMed] [Google Scholar]
- Walker J. W., McCray J. A., Hess G. P. Photolabile protecting groups for an acetylcholine receptor ligand. Synthesis and photochemistry of a new class of o-nitrobenzyl derivatives and their effects on receptor function. Biochemistry. 1986 Apr 8;25(7):1799–1805. doi: 10.1021/bi00355a052. [DOI] [PubMed] [Google Scholar]
- Walker J. W., Reid G. P., Trentham D. R. Synthesis and properties of caged nucleotides. Methods Enzymol. 1989;172:288–301. doi: 10.1016/s0076-6879(89)72019-x. [DOI] [PubMed] [Google Scholar]
- Waser J., Hübscher U., Kuenzle C. C., Spadari S. DNA polymerase beta from brain neurons is a repair enzyme. Eur J Biochem. 1979 Jul;97(2):361–368. doi: 10.1111/j.1432-1033.1979.tb13122.x. [DOI] [PubMed] [Google Scholar]
