Abstract
A simple procedure, involving heat-treatment, DEAE-Sephadex, AMP-Sepharose and Bio-Gel P-60 chromatography, was developed for the purification of S1 nuclease to homogeneity from commercially available Takadiastase powder. Chemical modification of the amino groups of purified S1 nuclease revealed that lysine is essential for single-stranded DNAase, RNAase and phosphomonoesterase activities associated with the enzyme. The kinetics of inactivation suggested the involvement of a single lysine residue in the active site of the enzyme. Additionally, lysine modification was accompanied by a concomitant loss of all the activities of the enzyme, indicating the presence of a common catalytic site responsible for the hydrolysis of single-stranded DNA, RNA and 3'-AMP. Substrate-protection and inhibitor-binding studies on enzyme modified with 2,4,6-trinitrobenzenesulphonic acid showed that lysine may be involved in the substrate binding.
Full text
PDF





Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Anderson R. A., Nakashima Y., Coleman J. E. Chemical modifications of functional residues of fd gene 5 DNA-binding protein. Biochemistry. 1975 Mar 11;14(5):907–917. doi: 10.1021/bi00676a006. [DOI] [PubMed] [Google Scholar]
- Ando T. A nuclease specific for heat-denatured DNA in isolated from a product of Aspergillus oryzae. Biochim Biophys Acta. 1966 Jan 18;114(1):158–168. doi: 10.1016/0005-2787(66)90263-2. [DOI] [PubMed] [Google Scholar]
- Bandyopadhyay P. K., Wu C. W. Fluorescence and chemical studies on the interaction of Escherichia coli DNA-binding protein with single-stranded DNA. Biochemistry. 1978 Sep 19;17(19):4078–4085. doi: 10.1021/bi00612a032. [DOI] [PubMed] [Google Scholar]
- Blakesley R. W., Boezi J. A. A new staining technique for proteins in polyacrylamide gels using coomassie brilliant blue G250. Anal Biochem. 1977 Oct;82(2):580–582. doi: 10.1016/0003-2697(77)90197-x. [DOI] [PubMed] [Google Scholar]
- Curtis P. J., Burdon M. G., Smellie R. M. The purification from rat liver of a nuclease hydrolysing ribonucleic acid and deoxyribonucleic acid. Biochem J. 1966 Mar;98(3):813–817. doi: 10.1042/bj0980813. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dixon H. B., Perham R. N. Reversible blocking of amino groups with citraconic anhydride. Biochem J. 1968 Sep;109(2):312–314. doi: 10.1042/bj1090312. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Habeeb A. F. Determination of free amino groups in proteins by trinitrobenzenesulfonic acid. Anal Biochem. 1966 Mar;14(3):328–336. doi: 10.1016/0003-2697(66)90275-2. [DOI] [PubMed] [Google Scholar]
- LOWRY O. H., ROSEBROUGH N. J., FARR A. L., RANDALL R. J. Protein measurement with the Folin phenol reagent. J Biol Chem. 1951 Nov;193(1):265–275. [PubMed] [Google Scholar]
- Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
- Means G. E., Feeney R. E. Reductive alkylation of amino groups in proteins. Biochemistry. 1968 Jun;7(6):2192–2201. doi: 10.1021/bi00846a023. [DOI] [PubMed] [Google Scholar]
- Mehra U., Ranjekar P. K. Buffalo (Bos bubalus) genome: occurrence & characterization of repeated DNA sequences. Indian J Biochem Biophys. 1979 Apr;16(2):56–60. [PubMed] [Google Scholar]
- Oleson A. E., Hoganson E. D. S1 nuclease of Aspergillus oryzae: characterization of the associated phosphomonoesterase activity. Arch Biochem Biophys. 1981 Oct 1;211(1):478–484. doi: 10.1016/0003-9861(81)90480-x. [DOI] [PubMed] [Google Scholar]
- Oleson A. E., Sasakuma M. S1 nuclease of Aspergillus oryzae: a glycoprotein with an associated nucleotidase activity. Arch Biochem Biophys. 1980 Oct 1;204(1):361–370. doi: 10.1016/0003-9861(80)90044-2. [DOI] [PubMed] [Google Scholar]
- Reddy L. G., Shankar V. Influence of lectin concentration on the catalytic properties of S1 nuclease bound to Concanavalin A-sepharose. Appl Biochem Biotechnol. 1989 Oct;22(1):79–94. doi: 10.1007/BF02922698. [DOI] [PubMed] [Google Scholar]
- Richardson R. M., Parés X., Cuchillo C. M. Chemical modification by pyridoxal 5'-phosphate and cyclohexane-1,2-dione indicates that Lys-7 and Arg-10 are involved in the p2 phosphate-binding subsite of bovine pancreatic ribonuclease A. Biochem J. 1990 May 1;267(3):593–599. doi: 10.1042/bj2670593. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Riordan J. F. Arginyl residues and anion binding sites in proteins. Mol Cell Biochem. 1979 Jul 31;26(2):71–92. doi: 10.1007/BF00232886. [DOI] [PubMed] [Google Scholar]
- Rushizky G. W. S1 nuclease of Aspergillus oryzae. Gene Amplif Anal. 1981;2:205–215. [PubMed] [Google Scholar]
- Rushizky G. W., Shaternikov V. A., Mozejko J. H., Sober H. A. S1 nuclease hydrolysis of single-stranded nucleic acids with partial double-stranded configuration. Biochemistry. 1975 Sep 23;14(19):4221–4226. doi: 10.1021/bi00690a011. [DOI] [PubMed] [Google Scholar]
- Shishido K., Habuka N. Purification of S1 nuclease to homogeneity and its chemical, physical and catalytic properties. Biochim Biophys Acta. 1986 Oct 29;884(1):215–218. doi: 10.1016/0304-4165(86)90247-3. [DOI] [PubMed] [Google Scholar]
- Uchida T., Shibata Y. An affinity adsorbent, 5'-adenylate-aminohexyl-sepharose. I. Purification and properties of two forms of RNase U2. J Biochem. 1981 Aug;90(2):463–471. doi: 10.1093/oxfordjournals.jbchem.a133493. [DOI] [PubMed] [Google Scholar]
- Vesterberg O. Isoelectric focusing of proteins in polyacrylamide gels. Biochim Biophys Acta. 1972 Jan 26;257(1):11–19. doi: 10.1016/0005-2795(72)90248-6. [DOI] [PubMed] [Google Scholar]
- Vogt V. M. Purification and further properties of single-strand-specific nuclease from Aspergillus oryzae. Eur J Biochem. 1973 Feb 15;33(1):192–200. doi: 10.1111/j.1432-1033.1973.tb02669.x. [DOI] [PubMed] [Google Scholar]
- Yamasaki R. B., Shimer D. A., Feeney R. E. Colorimetric determination of arginine residues in proteins by p-nitrophenylglyoxal. Anal Biochem. 1981 Mar 1;111(2):220–226. doi: 10.1016/0003-2697(81)90557-1. [DOI] [PubMed] [Google Scholar]