Abstract
Carboxypeptidase E is a member of the carboxypeptidase A and B gene family, with many of the putative active-site and substrate-binding residues conserved between these enzymes. However, the pH optimum of carboxypeptidase E is substantially lower than that of carboxypeptidases A and B. To evaluate whether the difference in the pH optima of these carboxypeptidases reflects fundamental differences in the ionization behaviour of active-site residues, the influence of pH on carboxypeptidase E activity was examined. The V(max) for hydrolysis of dansyl-Phe-Ala-Arg is pH-independent between 5 and 7, but decreases at pH values below 5. The pKa for the group the protonation of which leads to the loss of activity is approximately 4.8, and the slope of the V(max.)/pH profile suggests that only a single ionizable group is involved. In contrast, Km and V(max.)/Km are dramatically influenced by pH over the range 5-7, with multiple ionizable groups detected in this pH range. The pKa of the group the protonation of which decreases the V(max.) of substrate hydrolysis is lower (4.5) for carboxypeptidase E which had been reconstituted with Co2+. The enthalpy of ionization of the group observed in the V(max.) profile for carboxypeptidase E is approx. 28.9 kJ/mol. These results are compatible with the active-site model of the homologous carboxypeptidase A: in this model the ionization of a metal-bound water molecule is responsible for the observed decrease in V(max.).
Full text
PDF





Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Anderson R. G., Pathak R. K. Vesicles and cisternae in the trans Golgi apparatus of human fibroblasts are acidic compartments. Cell. 1985 Mar;40(3):635–643. doi: 10.1016/0092-8674(85)90212-0. [DOI] [PubMed] [Google Scholar]
- Auld D. S., Vallee B. L. Kinetics of carboxypeptidase A, pH and Temperature dependence of tripeptide hydrolysis. Biochemistry. 1971 Jul 20;10(15):2892–2897. doi: 10.1021/bi00791a015. [DOI] [PubMed] [Google Scholar]
- Auld D. S., Vallee B. L. Kinetics of carboxypeptidase A. The pH dependence of tripeptide hydrolysis catalyzed by zinc, cobalt, and manganese enzymes. Biochemistry. 1970 Oct 27;9(22):4352–4359. doi: 10.1021/bi00824a016. [DOI] [PubMed] [Google Scholar]
- Bourdais J., Devilliers G., Girard R., Morel A., Benedetti L., Cohen P. Prosomatostatin II processing is initiated in the trans-Golgi network of anglerfish pancreatic cells. Biochem Biophys Res Commun. 1990 Aug 16;170(3):1263–1272. doi: 10.1016/0006-291x(90)90530-z. [DOI] [PubMed] [Google Scholar]
- Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1016/0003-2697(76)90527-3. [DOI] [PubMed] [Google Scholar]
- Bradshaw R. A., Ericsson L. H., Walsh K. A., Neurath H. The amino acid sequence of bovine carboxypeptidase A. Proc Natl Acad Sci U S A. 1969 Aug;63(4):1389–1394. doi: 10.1073/pnas.63.4.1389. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clauser E., Gardell S. J., Craik C. S., MacDonald R. J., Rutter W. J. Structural characterization of the rat carboxypeptidase A1 and B genes. Comparative analysis of the rat carboxypeptidase gene family. J Biol Chem. 1988 Nov 25;263(33):17837–17845. [PubMed] [Google Scholar]
- Cleland W. W. Determining the chemical mechanisms of enzyme-catalyzed reactions by kinetic studies. Adv Enzymol Relat Areas Mol Biol. 1977;45:273–387. doi: 10.1002/9780470122907.ch4. [DOI] [PubMed] [Google Scholar]
- Cleland W. W. Statistical analysis of enzyme kinetic data. Methods Enzymol. 1979;63:103–138. doi: 10.1016/0076-6879(79)63008-2. [DOI] [PubMed] [Google Scholar]
- Davidson H. W., Hutton J. C. The insulin-secretory-granule carboxypeptidase H. Purification and demonstration of involvement in proinsulin processing. Biochem J. 1987 Jul 15;245(2):575–582. doi: 10.1042/bj2450575. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Davies R. C., Riordan J. F., Auld D. S., Vallee B. L. Kinetics of carboxypeptidase A. I. Hydrolysis of carbobenzoxyglycyl-l-phenylalanine, benzoylglycyl-l-phenylalanine, and hippuryl-dl-beta-phenyllactic acid by metal-substituted and acetylated carboxypeptidases. Biochemistry. 1968 Mar;7(3):1090–1099. doi: 10.1021/bi00843a029. [DOI] [PubMed] [Google Scholar]
- Eaton D. L., Malloy B. E., Tsai S. P., Henzel W., Drayna D. Isolation, molecular cloning, and partial characterization of a novel carboxypeptidase B from human plasma. J Biol Chem. 1991 Nov 15;266(32):21833–21838. [PubMed] [Google Scholar]
- Fricker L. D., Adelman J. P., Douglass J., Thompson R. C., von Strandmann R. P., Hutton J. Isolation and sequence analysis of cDNA for rat carboxypeptidase E [EC 3.4.17.10], a neuropeptide processing enzyme. Mol Endocrinol. 1989 Apr;3(4):666–673. doi: 10.1210/mend-3-4-666. [DOI] [PubMed] [Google Scholar]
- Fricker L. D. Carboxypeptidase E. Annu Rev Physiol. 1988;50:309–321. doi: 10.1146/annurev.ph.50.030188.001521. [DOI] [PubMed] [Google Scholar]
- Fricker L. D., Das B., Angeletti R. H. Identification of the pH-dependent membrane anchor of carboxypeptidase E (EC 3.4.17.10). J Biol Chem. 1990 Feb 15;265(5):2476–2482. [PubMed] [Google Scholar]
- Fricker L. D., Evans C. J., Esch F. S., Herbert E. Cloning and sequence analysis of cDNA for bovine carboxypeptidase E. Nature. 1986 Oct 2;323(6087):461–464. doi: 10.1038/323461a0. [DOI] [PubMed] [Google Scholar]
- Fricker L. D., Snyder S. H. Enkephalin convertase: purification and characterization of a specific enkephalin-synthesizing carboxypeptidase localized to adrenal chromaffin granules. Proc Natl Acad Sci U S A. 1982 Jun;79(12):3886–3890. doi: 10.1073/pnas.79.12.3886. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fricker L. D., Snyder S. H. Purification and characterization of enkephalin convertase, an enkephalin-synthesizing carboxypeptidase. J Biol Chem. 1983 Sep 25;258(18):10950–10955. [PubMed] [Google Scholar]
- Gardell S. J., Craik C. S., Clauser E., Goldsmith E. J., Stewart C. B., Graf M., Rutter W. J. A novel rat carboxypeptidase, CPA2: characterization, molecular cloning, and evolutionary implications on substrate specificity in the carboxypeptidase gene family. J Biol Chem. 1988 Nov 25;263(33):17828–17836. [PubMed] [Google Scholar]
- Gebhard W., Schube M., Eulitz M. cDNA cloning and complete primary structure of the small, active subunit of human carboxypeptidase N (kininase 1). Eur J Biochem. 1989 Jan 2;178(3):603–607. doi: 10.1111/j.1432-1033.1989.tb14488.x. [DOI] [PubMed] [Google Scholar]
- Hook V. Y., Loh Y. P. Carboxypeptidase B-like converting enzyme activity in secretory granules of rat pituitary. Proc Natl Acad Sci U S A. 1984 May;81(9):2776–2780. doi: 10.1073/pnas.81.9.2776. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Johnson R. G., Scarpa A. Internal pH of isolated chromaffin vesicles. J Biol Chem. 1976 Apr 10;251(7):2189–2191. [PubMed] [Google Scholar]
- Jung Y. K., Kunczt C. J., Pearson R. K., Dixon J. E., Fricker L. D. Structural characterization of the rat carboxypeptidase-E gene. Mol Endocrinol. 1991 Sep;5(9):1257–1268. doi: 10.1210/mend-5-9-1257. [DOI] [PubMed] [Google Scholar]
- Makinen M. W., Wells G. B., Kang S. O. Structure and mechanism of carboxypeptidase A. Adv Inorg Biochem. 1984;6:1–69. [PubMed] [Google Scholar]
- Manser E., Fernandez D., Loo L., Goh P. Y., Monfries C., Hall C., Lim L. Human carboxypeptidase E. Isolation and characterization of the cDNA, sequence conservation, expression and processing in vitro. Biochem J. 1990 Apr 15;267(2):517–525. doi: 10.1042/bj2670517. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mock W. L., Tsay J. T. pK values for active site residues of carboxypeptidase A. J Biol Chem. 1988 Jun 25;263(18):8635–8641. [PubMed] [Google Scholar]
- Narahashi Y. The amino acid sequence of zinc-carboxypeptidase from Streptomyces griseus. J Biochem. 1990 Jun;107(6):879–886. doi: 10.1093/oxfordjournals.jbchem.a123142. [DOI] [PubMed] [Google Scholar]
- Narahashi Y., Yoda K. Purification and some properties of a new metallo carboxypeptidase of Streptomyces griseus K-1. J Biochem. 1979 Sep;86(3):683–694. doi: 10.1093/oxfordjournals.jbchem.a132572. [DOI] [PubMed] [Google Scholar]
- Orci L., Ravazzola M., Storch M. J., Anderson R. G., Vassalli J. D., Perrelet A. Proteolytic maturation of insulin is a post-Golgi event which occurs in acidifying clathrin-coated secretory vesicles. Cell. 1987 Jun 19;49(6):865–868. doi: 10.1016/0092-8674(87)90624-6. [DOI] [PubMed] [Google Scholar]
- Plummer T. H., Jr, Erdös E. G. Human plasma carboxypeptidase N. Methods Enzymol. 1981;80(Pt 100):442–449. doi: 10.1016/s0076-6879(81)80038-9. [DOI] [PubMed] [Google Scholar]
- Quinto C., Quiroga M., Swain W. F., Nikovits W. C., Jr, Standring D. N., Pictet R. L., Valenzuela P., Rutter W. J. Rat preprocarboxypeptidase A: cDNA sequence and preliminary characterization of the gene. Proc Natl Acad Sci U S A. 1982 Jan;79(1):31–35. doi: 10.1073/pnas.79.1.31. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reynolds D. S., Gurley D. S., Stevens R. L., Sugarbaker D. J., Austen K. F., Serafin W. E. Cloning of cDNAs that encode human mast cell carboxypeptidase A, and comparison of the protein with mouse mast cell carboxypeptidase A and rat pancreatic carboxypeptidases. Proc Natl Acad Sci U S A. 1989 Dec;86(23):9480–9484. doi: 10.1073/pnas.86.23.9480. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reynolds D. S., Stevens R. L., Gurley D. S., Lane W. S., Austen K. F., Serafin W. E. Isolation and molecular cloning of mast cell carboxypeptidase A. A novel member of the carboxypeptidase gene family. J Biol Chem. 1989 Nov 25;264(33):20094–20099. [PubMed] [Google Scholar]
- Rodríguez C., Brayton K. A., Brownstein M., Dixon J. E. Rat preprocarboxypeptidase H. Cloning, characterization, and sequence of the cDNA and regulation of the mRNA by corticotropin-releasing factor. J Biol Chem. 1989 Apr 5;264(10):5988–5995. [PubMed] [Google Scholar]
- Roth W. W., Mackin R. B., Spiess J., Goodman R. H., Noe B. D. Primary structure and tissue distribution of anglerfish carboxypeptidase H. Mol Cell Endocrinol. 1991 Jul;78(3):171–178. doi: 10.1016/0303-7207(91)90120-h. [DOI] [PubMed] [Google Scholar]
- Russell J. T. Delta pH, H+ diffusion potentials, and Mg2+ ATPase in neurosecretory vesicles isolated from bovine neurohypophyses. J Biol Chem. 1984 Aug 10;259(15):9496–9507. [PubMed] [Google Scholar]
- Schmid M. F., Herriott J. R. Structure of carboxypeptidase B at 2-8 A resolution. J Mol Biol. 1976 May 5;103(1):175–190. doi: 10.1016/0022-2836(76)90058-9. [DOI] [PubMed] [Google Scholar]
- Schnabel E., Mains R. E., Farquhar M. G. Proteolytic processing of pro-ACTH/endorphin begins in the Golgi complex of pituitary corticotropes and AtT-20 cells. Mol Endocrinol. 1989 Aug;3(8):1223–1235. doi: 10.1210/mend-3-8-1223. [DOI] [PubMed] [Google Scholar]
- Sikka V. K., Kumar S. Underexpression of ap from R-plasmids in fast-growing Rhizobium species. Appl Environ Microbiol. 1984 Dec;48(6):1248–1250. doi: 10.1128/aem.48.6.1248-1250.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Skidgel R. A., Davis R. M., Tan F. Human carboxypeptidase M. Purification and characterization of a membrane-bound carboxypeptidase that cleaves peptide hormones. J Biol Chem. 1989 Feb 5;264(4):2236–2241. [PubMed] [Google Scholar]
- Smyth D. G., Maruthainar K., Darby N. J., Fricker L. D. Catalysis of slow C-terminal processing reactions by carboxypeptidase H. J Neurochem. 1989 Aug;53(2):489–493. doi: 10.1111/j.1471-4159.1989.tb07360.x. [DOI] [PubMed] [Google Scholar]
- Tan F., Chan S. J., Steiner D. F., Schilling J. W., Skidgel R. A. Molecular cloning and sequencing of the cDNA for human membrane-bound carboxypeptidase M. Comparison with carboxypeptidases A, B, H, and N. J Biol Chem. 1989 Aug 5;264(22):13165–13170. [PubMed] [Google Scholar]
- Titani K., Ericsson L. H., Walsh K. A., Neurath H. Amino-acid sequence of bovine carboxypeptidase B. Proc Natl Acad Sci U S A. 1975 May;72(5):1666–1670. doi: 10.1073/pnas.72.5.1666. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vallee B. L., Auld D. S. Zinc coordination, function, and structure of zinc enzymes and other proteins. Biochemistry. 1990 Jun 19;29(24):5647–5659. doi: 10.1021/bi00476a001. [DOI] [PubMed] [Google Scholar]
