Skip to main content
Biochemical Journal logoLink to Biochemical Journal
. 1993 Jul 1;293(Pt 1):65–73. doi: 10.1042/bj2930065

Characterization of the expressed genes for subunit c of mitochondrial ATP synthase in sheep with ceroid lipofuscinosis.

S M Medd 1, J E Walker 1, R D Jolly 1
PMCID: PMC1134320  PMID: 8328973

Abstract

The human and bovine genomes each contain two expressed nuclear genes, called P1 and P2, for subunit c, a hydrophobic subunit of the membrane sector, Fo, of mitochondrial ATP synthase. Both P1 and P2 encode the same mature protein, but the associated mitochondrial import sequences are different. In sheep with the neurodegenerative disease ceroid lipofuscinosis, and also in humans with Batten's disease, unmodified subunit c accumulates in lysosome-derived organelles in a variety of tissues. However, the sequences of cDNAs for P1 and P2 from sheep with ceroid lipofuscinosis were identical to those in healthy control animals. Therefore, since there was no mutation in either of the mitochondrial import sequences of subunit c in the diseased animals, ceroid lipofuscinosis does not arise from changes in an import sequence causing mis-targeting of the c subunit to lysosomes. The levels of expression of P1 and P2 genes were approximately the same in diseased and healthy animals, and so the protein is unlikely to accumulate because of excessive transcription of either gene. Transcription of a spliced pseudogene related to P2 was detected in both a control animal and a sheep with ceroid lipofuscinosis. The transcripts encode amino acids 1-31 of the P2 mitochondrial targeting sequence. In the diseased animal, an arginine replaced a glutamine in the control sequence. However, restriction fragment analysis of genomic DNA from a further 12 sheep established that the sequence differences were not linked to ceroid lipofuscinosis.

Full text

PDF
65

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bentley D. L., Rabbitts T. H. Human V kappa immunoglobulin gene number: implications for the origin of antibody diversity. Cell. 1981 Jun;24(3):613–623. doi: 10.1016/0092-8674(81)90088-x. [DOI] [PubMed] [Google Scholar]
  2. Benton W. D., Davis R. W. Screening lambdagt recombinant clones by hybridization to single plaques in situ. Science. 1977 Apr 8;196(4286):180–182. doi: 10.1126/science.322279. [DOI] [PubMed] [Google Scholar]
  3. Boustany R. M., Alroy J., Kolodny E. H. Clinical classification of neuronal ceroid-lipofuscinosis subtypes. Am J Med Genet Suppl. 1988;5:47–58. doi: 10.1002/ajmg.1320310608. [DOI] [PubMed] [Google Scholar]
  4. Chirgwin J. M., Przybyla A. E., MacDonald R. J., Rutter W. J. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 1979 Nov 27;18(24):5294–5299. doi: 10.1021/bi00591a005. [DOI] [PubMed] [Google Scholar]
  5. Dyer M. R., Gay N. J., Walker J. E. DNA sequences of a bovine gene and of two related pseudogenes for the proteolipid subunit of mitochondrial ATP synthase. Biochem J. 1989 May 15;260(1):249–258. doi: 10.1042/bj2600249. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Dyer M. R., Walker J. E. Sequences of members of the human gene family for the c subunit of mitochondrial ATP synthase. Biochem J. 1993 Jul 1;293(Pt 1):51–64. doi: 10.1042/bj2930051. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Dyken P. R. Reconsideration of the classification of the neuronal ceroid-lipofuscinoses. Am J Med Genet Suppl. 1988;5:69–84. doi: 10.1002/ajmg.1320310610. [DOI] [PubMed] [Google Scholar]
  8. Farrell P. J., Deininger P. L., Bankier A., Barrell B. Homologous upstream sequences near Epstein-Barr virus promoters. Proc Natl Acad Sci U S A. 1983 Mar;80(6):1565–1569. doi: 10.1073/pnas.80.6.1565. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Fearnley I. M., Walker J. E. Initiation codons in mammalian mitochondria: differences in genetic code in the organelle. Biochemistry. 1987 Dec 15;26(25):8247–8251. doi: 10.1021/bi00399a034. [DOI] [PubMed] [Google Scholar]
  10. Fearnley I. M., Walker J. E., Martinus R. D., Jolly R. D., Kirkland K. B., Shaw G. J., Palmer D. N. The sequence of the major protein stored in ovine ceroid lipofuscinosis is identical with that of the dicyclohexylcarbodiimide-reactive proteolipid of mitochondrial ATP synthase. Biochem J. 1990 Jun 15;268(3):751–758. doi: 10.1042/bj2680751. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Fearnley I. M., Walker J. E. Two overlapping genes in bovine mitochondrial DNA encode membrane components of ATP synthase. EMBO J. 1986 Aug;5(8):2003–2008. doi: 10.1002/j.1460-2075.1986.tb04456.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
  13. Gardiner R. M. Mapping the gene for juvenile onset neuronal ceroid lipofuscinosis to chromosome 16 by linkage analysis. Am J Med Genet. 1992 Feb 15;42(4):539–541. doi: 10.1002/ajmg.1320420423. [DOI] [PubMed] [Google Scholar]
  14. Gay N. J., Walker J. E. Two genes encoding the bovine mitochondrial ATP synthase proteolipid specify precursors with different import sequences and are expressed in a tissue-specific manner. EMBO J. 1985 Dec 16;4(13A):3519–3524. doi: 10.1002/j.1460-2075.1985.tb04111.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Hare J. F., Hodges R. Turnover of mitochondrial inner membrane proteins in hepatoma monolayer cultures. J Biol Chem. 1982 Apr 10;257(7):3575–3580. [PubMed] [Google Scholar]
  16. Jolly R. D., Janmaat A., West D. M., Morrison I. Ovine ceroid-lipofuscinosis: a model of Batten's disease. Neuropathol Appl Neurobiol. 1980 May-Jun;6(3):195–209. doi: 10.1111/j.1365-2990.1980.tb00290.x. [DOI] [PubMed] [Google Scholar]
  17. Jolly R. D., Shimada A., Dopfmer I., Slack P. M., Birtles M. J., Palmer D. N. Ceroid-lipofuscinosis (Batten's disease): pathogenesis and sequential neuropathological changes in the ovine model. Neuropathol Appl Neurobiol. 1989 Jul-Aug;15(4):371–383. doi: 10.1111/j.1365-2990.1989.tb01236.x. [DOI] [PubMed] [Google Scholar]
  18. Messing J. New M13 vectors for cloning. Methods Enzymol. 1983;101:20–78. doi: 10.1016/0076-6879(83)01005-8. [DOI] [PubMed] [Google Scholar]
  19. Messing J., Vieira J. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments. Gene. 1982 Oct;19(3):269–276. doi: 10.1016/0378-1119(82)90016-6. [DOI] [PubMed] [Google Scholar]
  20. Norrander J., Kempe T., Messing J. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis. Gene. 1983 Dec;26(1):101–106. doi: 10.1016/0378-1119(83)90040-9. [DOI] [PubMed] [Google Scholar]
  21. Palmer D. N., Barns G., Husbands D. R., Jolly R. D. Ceroid lipofuscinosis in sheep. II. The major component of the lipopigment in liver, kidney, pancreas, and brain is low molecular weight protein. J Biol Chem. 1986 Feb 5;261(4):1773–1777. [PubMed] [Google Scholar]
  22. Palmer D. N., Fearnley I. M., Walker J. E., Hall N. A., Lake B. D., Wolfe L. S., Haltia M., Martinus R. D., Jolly R. D. Mitochondrial ATP synthase subunit c storage in the ceroid-lipofuscinoses (Batten disease). Am J Med Genet. 1992 Feb 15;42(4):561–567. doi: 10.1002/ajmg.1320420428. [DOI] [PubMed] [Google Scholar]
  23. Palmer D. N., Martinus R. D., Cooper S. M., Midwinter G. G., Reid J. C., Jolly R. D. Ovine ceroid lipofuscinosis. The major lipopigment protein and the lipid-binding subunit of mitochondrial ATP synthase have the same NH2-terminal sequence. J Biol Chem. 1989 Apr 5;264(10):5736–5740. [PubMed] [Google Scholar]
  24. Proudfoot N. J., Brownlee G. G. 3' non-coding region sequences in eukaryotic messenger RNA. Nature. 1976 Sep 16;263(5574):211–214. doi: 10.1038/263211a0. [DOI] [PubMed] [Google Scholar]
  25. Rider J. A., Rider D. L. Batten disease: past, present, and future. Am J Med Genet Suppl. 1988;5:21–26. doi: 10.1002/ajmg.1320310606. [DOI] [PubMed] [Google Scholar]
  26. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
  27. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  28. Viñas O., Powell S. J., Runswick M. J., Iacobazzi V., Walker J. E. The epsilon-subunit of ATP synthase from bovine heart mitochondria. Complementary DNA sequence, expression in bovine tissues and evidence of homologous sequences in man and rat. Biochem J. 1990 Jan 15;265(2):321–326. doi: 10.1042/bj2650321. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Walker J. E., Arizmendi J. M., Dupuis A., Fearnley I. M., Finel M., Medd S. M., Pilkington S. J., Runswick M. J., Skehel J. M. Sequences of 20 subunits of NADH:ubiquinone oxidoreductase from bovine heart mitochondria. Application of a novel strategy for sequencing proteins using the polymerase chain reaction. J Mol Biol. 1992 Aug 20;226(4):1051–1072. doi: 10.1016/0022-2836(92)91052-q. [DOI] [PubMed] [Google Scholar]
  30. Walker J. E., Gay N. J., Powell S. J., Kostina M., Dyer M. R. ATP synthase from bovine mitochondria: sequences of imported precursors of oligomycin sensitivity conferral protein, factor 6, and adenosinetriphosphatase inhibitor protein. Biochemistry. 1987 Dec 29;26(26):8613–8619. doi: 10.1021/bi00400a018. [DOI] [PubMed] [Google Scholar]
  31. Zeman W., Dyken P. Neuronal ceroid-lipofuscinosis (Batten's disease): relationship to amaurotic family idiocy? Pediatrics. 1969 Oct;44(4):570–583. [PubMed] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

RESOURCES