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. 1989 Jan 15;257(2):355–359. doi: 10.1042/bj2570355

Investigation of alpha-deuterium kinetic isotope effects on the purine nucleoside phosphorylase reaction by the equilibrium-perturbation technique.

P K Lehikoinen 1, M L Sinnott 1, T A Krenitsky 1
PMCID: PMC1135587  PMID: 2494984

Abstract

1. alpha-Deuterium kinetic isotope effects on the phosphorolysis of inosine catalysed by Escherichia coli purine nucleoside phosphorylase were measured by the equilibrium-perturbation technique, by using the change in absorbance at 250 nm (approx. 20%). 2. Values of 2H(V/K) of 1.13(9) at pH 5.0, 1.10(5) at pH 6.1, 1.09(4) at pH 7.3, 1.08 at pH 8.4 and 1.16(4) at pH 9.4 were obtained. 3. These are compared with literature alpha-deuterium kinetic isotope effects for this and related reactions. 4. The equilibrium constant, defined as [inosine].[H2PO4-]/[hypoxanthine] [alpha-Rib f OPO3H-], is 46 at 25 degrees C. 5. N-3-beta-D-Ribofuranosylhypoxanthine, an impurity in chemically synthesized inosine, is a substrate.

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Selected References

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  1. ASHBY J. H., CLARKE H. B., CROOK E. M., DATTA S. P. Thermodynamic quantities for the dissociation equilibria of biologically important compounds. 4. The second acid dissociation of glucose 1-phosphoric acid. Biochem J. 1955 Feb;59(2):203–208. doi: 10.1042/bj0590203. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Chenon M. T., Pugmire R. J., Grant D. M., Panzica R. P., Townsend L. B. Carbon-13 magnetic resonance. XXV. A basic set of parameters for the investigation of tautomerism im purines. Established from carbon-13 magnetic resonance studies using certain purines and pyrrolo[2,3-d]pyrimidines. J Am Chem Soc. 1975 Aug 6;97(16):4627–4636. doi: 10.1021/ja00849a027. [DOI] [PubMed] [Google Scholar]
  3. Cleland W. W. Determination of equilibrium isotope effects by the equilibrium perturbation method. Methods Enzymol. 1982;87:641–646. doi: 10.1016/s0076-6879(82)87034-1. [DOI] [PubMed] [Google Scholar]
  4. Cleland W. W. Use of isotope effects to elucidate enzyme mechanisms. CRC Crit Rev Biochem. 1982;13(4):385–428. doi: 10.3109/10409238209108715. [DOI] [PubMed] [Google Scholar]
  5. Cook W. J., Ealick S. E., Krenitsky T. A., Stoeckler J. D., Helliwell J. R., Bugg C. E. Crystallization and preliminary x-ray investigation of purine-nucleoside phosphorylase from Escherichia coli. J Biol Chem. 1985 Oct 25;260(24):12968–12969. [PubMed] [Google Scholar]
  6. DeWolf W. E., Jr, Emig F. A., Schramm V. L. AMP nucleosidase: kinetic mechanism and thermodynamics. Biochemistry. 1986 Jul 15;25(14):4132–4140. doi: 10.1021/bi00362a022. [DOI] [PubMed] [Google Scholar]
  7. HEPPEL L. A., HILMOE R. J. [Phosphorolysis and hydrolysis of purine ribosides by enzymes from yeast]. J Biol Chem. 1952 Oct;198(2):683–694. [PubMed] [Google Scholar]
  8. Hosie L., Sinnott M. L. Effects of deuterium substitution alpha and beta to the reaction centre, 18O substitution in the leaving group, and aglycone acidity on hydrolyses of aryl glucosides and glucosyl pyridinium ions by yeast alpha-glucosidase. A probable failure of the antiperiplanar-lone-pair hypothesis in glycosidase catalysis. Biochem J. 1985 Mar 1;226(2):437–446. doi: 10.1042/bj2260437. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Jensen K. F., Nygaard P. Purine nucleoside phosphorylase from Escherichia coli and Salmonella typhimurium. Purification and some properties. Eur J Biochem. 1975 Feb 3;51(1):253–265. doi: 10.1111/j.1432-1033.1975.tb03925.x. [DOI] [PubMed] [Google Scholar]
  10. Kim B. K., Cha S., Parks R. E., Jr Purine nucleoside phosphorylase from human erythrocytes. I. Purification and properties. J Biol Chem. 1968 Apr 25;243(8):1763–1770. [PubMed] [Google Scholar]
  11. Lönnberg H., Lehikoinen P. Mechanisms for the solvolytic decompositions of nucleoside analogues. X. Acidic hydrolysis of 6-substituted 9-(beta-D-ribofuranosyl)purines. Nucleic Acids Res. 1982 Jul 24;10(14):4339–4349. doi: 10.1093/nar/10.14.4339. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Murakami K., Tsushima K. Crystallization and some properties of purine nucleoside phosphorylase from chicken liver. Biochim Biophys Acta. 1975 Apr 19;384(2):390–398. doi: 10.1016/0005-2744(75)90040-6. [DOI] [PubMed] [Google Scholar]
  13. Parkin D. W., Schramm V. L. Catalytic and allosteric mechanism of AMP nucleosidase from primary, beta-secondary, and multiple heavy atom kinetic isotope effects. Biochemistry. 1987 Feb 10;26(3):913–920. doi: 10.1021/bi00377a036. [DOI] [PubMed] [Google Scholar]
  14. Ray P. H., Benedict C. D. Purification and characterization of specific 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Escherichia coli B. J Bacteriol. 1980 Apr;142(1):60–68. doi: 10.1128/jb.142.1.60-68.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Salamone S. J., Jordan F., Jordan R. R. 31P NMR studies on purine nucleoside phosphorylases: determination of the scissile bond and of the equilibrium constant. Arch Biochem Biophys. 1982 Aug;217(1):139–143. doi: 10.1016/0003-9861(82)90487-8. [DOI] [PubMed] [Google Scholar]
  16. Schimerlik M. I., Rife J. E., Cleland W. W. Equilibrium perturbation by isotope substitution. Biochemistry. 1975 Dec 2;14(24):5347–5354. doi: 10.1021/bi00695a020. [DOI] [PubMed] [Google Scholar]
  17. Schrader W. P., Stacy A. R., Pollara B. Purification of human erythrocyte adenosine deaminase by affinity column chromatography. J Biol Chem. 1976 Jul 10;251(13):4026–4032. [PubMed] [Google Scholar]
  18. Shapiro R., Kang S. Uncatalyzed hydrolysis of deoxyuridine, thymidine, and 5-bromodeoxyuridine. Biochemistry. 1969 May;8(5):1806–1810. doi: 10.1021/bi00833a004. [DOI] [PubMed] [Google Scholar]
  19. Sinnott M. L., Withers S. G. The beta-galactosidase-catalysed hydrolyses of beta-d-galactopyranosyl pyridium salts. Rate-limiting generation of an enzyme-bound galactopyranosyl cation in a process dependent only on aglycone acidity. Biochem J. 1974 Dec;143(3):751–762. doi: 10.1042/bj1430751. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Skoog M. T. Mechanism and activation for allosteric adenosine 5'-monophosphate nucleosidase. Kinetic alpha-deuterium isotope effects for the enzyme-catalyzed hydrolysis of adenosine 5'-monophosphate and nicotinamide mononucleotide. J Biol Chem. 1986 Apr 5;261(10):4451–4459. [PubMed] [Google Scholar]
  21. Spector T. Refinement of the coomassie blue method of protein quantitation. A simple and linear spectrophotometric assay for less than or equal to 0.5 to 50 microgram of protein. Anal Biochem. 1978 May;86(1):142–146. doi: 10.1016/0003-2697(78)90327-5. [DOI] [PubMed] [Google Scholar]
  22. Stein R. L., Cordes E. H. Kinetic alpha-deuterium isotope effects for Escherichia coli purine nucleoside phosphorylase-catalyzed phosphorolysis of adenosine and inosine. J Biol Chem. 1981 Jan 25;256(2):767–772. [PubMed] [Google Scholar]
  23. TARR H. L. Lingcod muscle purine nucleoside phosphorylase. Can J Biochem Physiol. 1958 Jun;36(6):517–530. [PubMed] [Google Scholar]
  24. Tindall C. G., Jr, Robins R. K., Tolman R. L., Hutzenlaub W. Directed glycosylation of 8-bromoadenine. Synthesis and reactions of 8-substituted 3-glycosyladenine derivatives. J Org Chem. 1972 Dec 15;37(25):3985–3989. doi: 10.1021/jo00798a003. [DOI] [PubMed] [Google Scholar]
  25. Wolfenden R., Sharpless T. K., Ragade I. S., Leonard N. J. Enzymatic and chemical deamination of 3-(beta-D-ribofuranosyl)adenine. J Am Chem Soc. 1966 Jan 5;88(1):185–186. doi: 10.1021/ja00953a047. [DOI] [PubMed] [Google Scholar]
  26. de VERDIER C., GOULD B. J. Purine ribonucleoside and deoxyribonucleoside phosphorylase in human erythrocytes. Biochim Biophys Acta. 1963 Mar 26;68:333–341. doi: 10.1016/0006-3002(63)90155-0. [DOI] [PubMed] [Google Scholar]

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