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. 1995 May 1;307(Pt 3):735–741. doi: 10.1042/bj3070735

The role of the novel disulphide ring in the active site of the quinoprotein methanol dehydrogenase from Methylobacterium extorquens.

A Avezoux 1, M G Goodwin 1, C Anthony 1
PMCID: PMC1136712  PMID: 7741704

Abstract

All cysteines in methanol dehydrogenase (MDH) from Methylobacterium extorquens are involved in intra-subunit disulphide bridge formation. One of these is between adjacent cysteine residues which form a novel ring structure in the active site. It is readily reduced, the reduced enzyme being inactive in electron transfer to cytochrome cL. The inactivation is not a result of major structural change or to modification of the prosthetic group pyrrolo-quinoline quinone (PQQ). The reduced enzyme appears to remain active with the artificial electron acceptor phenazine ethosulphate but this is because the dye re-oxidizes the adjacent thiols back to the original disulphide bridge. No free thiols were detected during the reaction cycle with cytochrome cL. Carboxymethylation of the thiols produced by reduction of the novel disulphide ring led to formation of active enzyme. Reconstitution of inactive Ca(2+)-free MDH with Ca2+ led to active enzyme containing the oxidized bridge and reduced quinol, PQQH2, consistent with the conclusion that no hydrogen transfer occurs between these groups in the active site. It is concluded that the disulphide ring in the active site of MDH does not function as a redox component of the reaction. The disulphide ring has no special function in the process of Ca2+ incorporation into the active site. It is suggested that this novel structure might function in the stabilization or protection of the free radical semiquinone form of the prosthetic group (PQQH.) from solvent at the entrance to the active site.

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Selected References

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  1. Anderson D. J., Morris C. J., Nunn D. N., Anthony C., Lidstrom M. E. Nucleotide sequence of the Methylobacterium extorquens AM1 moxF and moxJ genes involved in methanol oxidation. Gene. 1990 May 31;90(1):173–176. doi: 10.1016/0378-1119(90)90457-3. [DOI] [PubMed] [Google Scholar]
  2. Anthony C. Bacterial oxidation of methane and methanol. Adv Microb Physiol. 1986;27:113–210. doi: 10.1016/s0065-2911(08)60305-7. [DOI] [PubMed] [Google Scholar]
  3. Anthony C., Ghosh M., Blake C. C. The structure and function of methanol dehydrogenase and related quinoproteins containing pyrrolo-quinoline quinone. Biochem J. 1994 Dec 15;304(Pt 3):665–674. doi: 10.1042/bj3040665. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Anthony C. The c-type cytochromes of methylotrophic bacteria. Biochim Biophys Acta. 1992 Jan 30;1099(1):1–15. [PubMed] [Google Scholar]
  5. Anthony C. The structure of bacterial quinoprotein dehydrogenases. Int J Biochem. 1992;24(1):29–39. doi: 10.1016/0020-711x(92)90226-q. [DOI] [PubMed] [Google Scholar]
  6. Blake C. C., Ghosh M., Harlos K., Avezoux A., Anthony C. The active site of methanol dehydrogenase contains a disulphide bridge between adjacent cysteine residues. Nat Struct Biol. 1994 Feb;1(2):102–105. doi: 10.1038/nsb0294-102. [DOI] [PubMed] [Google Scholar]
  7. Chen L., Mathews F. S., Davidson V. L., Huizinga E. G., Vellieux F. M., Hol W. G. Three-dimensional structure of the quinoprotein methylamine dehydrogenase from Paracoccus denitrificans determined by molecular replacement at 2.8 A resolution. Proteins. 1992 Oct;14(2):288–299. doi: 10.1002/prot.340140214. [DOI] [PubMed] [Google Scholar]
  8. Cleton-Jansen A. M., Goosen N., Fayet O., van de Putte P. Cloning, mapping, and sequencing of the gene encoding Escherichia coli quinoprotein glucose dehydrogenase. J Bacteriol. 1990 Nov;172(11):6308–6315. doi: 10.1128/jb.172.11.6308-6315.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Cleton-Jansen A. M., Goosen N., Odle G., van de Putte P. Nucleotide sequence of the gene coding for quinoprotein glucose dehydrogenase from Acinetobacter calcoaceticus. Nucleic Acids Res. 1988 Jul 11;16(13):6228–6228. doi: 10.1093/nar/16.13.6228. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Cleton-Jansen A. M., Goosen N., Vink K., van de Putte P. Cloning, characterization and DNA sequencing of the gene encoding the Mr 50,000 quinoprotein glucose dehydrogenase from Acinetobacter calcoaceticus. Mol Gen Genet. 1989 Jun;217(2-3):430–436. doi: 10.1007/BF02464914. [DOI] [PubMed] [Google Scholar]
  11. Cox J. M., Day D. J., Anthony C. The interaction of methanol dehydrogenase and its electron acceptor, cytochrome cL in methylotrophic bacteria. Biochim Biophys Acta. 1992 Feb 13;1119(1):97–106. doi: 10.1016/0167-4838(92)90240-e. [DOI] [PubMed] [Google Scholar]
  12. Day D. J., Anthony C. Soluble cytochromes c of methanol-utilizing bacteria. Methods Enzymol. 1990;188:298–303. doi: 10.1016/0076-6879(90)88046-d. [DOI] [PubMed] [Google Scholar]
  13. Dijkstra M., Frank J., Jr, Duine J. A. Studies on electron transfer from methanol dehydrogenase to cytochrome cL, both purified from Hyphomicrobium X. Biochem J. 1989 Jan 1;257(1):87–94. doi: 10.1042/bj2570087. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Duine J. A., Frank J., Jongejan J. A. Enzymology of quinoproteins. Adv Enzymol Relat Areas Mol Biol. 1987;59:169–212. doi: 10.1002/9780470123058.ch4. [DOI] [PubMed] [Google Scholar]
  15. Duine J. A., Frank J., van Zeeland J. K. Glucose dehydrogenase from Acinetobacter calcoaceticus: a 'quinoprotein'. FEBS Lett. 1979 Dec 15;108(2):443–446. doi: 10.1016/0014-5793(79)80584-0. [DOI] [PubMed] [Google Scholar]
  16. Frank J., Jr, Dijkstra M., Duine J. A., Balny C. Kinetic and spectral studies on the redox forms of methanol dehydrogenase from Hyphomicrobium X. Eur J Biochem. 1988 Jun 1;174(2):331–338. doi: 10.1111/j.1432-1033.1988.tb14102.x. [DOI] [PubMed] [Google Scholar]
  17. Ghosh M., Anthony C., Harlos K., Goodwin M. G., Blake C. The refined structure of the quinoprotein methanol dehydrogenase from Methylobacterium extorquens at 1.94 A. Structure. 1995 Feb 15;3(2):177–187. doi: 10.1016/s0969-2126(01)00148-4. [DOI] [PubMed] [Google Scholar]
  18. Harms N., de Vries G. E., Maurer K., Hoogendijk J., Stouthamer A. H. Isolation and nucleotide sequence of the methanol dehydrogenase structural gene from Paracoccus denitrificans. J Bacteriol. 1987 Sep;169(9):3969–3975. doi: 10.1128/jb.169.9.3969-3975.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Inoue T., Sunagawa M., Mori A., Imai C., Fukuda M., Takagi M., Yano K. Cloning and sequencing of the gene encoding the 72-kilodalton dehydrogenase subunit of alcohol dehydrogenase from Acetobacter aceti. J Bacteriol. 1989 Jun;171(6):3115–3122. doi: 10.1128/jb.171.6.3115-3122.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Ito N., Phillips S. E., Yadav K. D., Knowles P. F. Crystal structure of a free radical enzyme, galactose oxidase. J Mol Biol. 1994 May 20;238(5):794–814. doi: 10.1006/jmbi.1994.1335. [DOI] [PubMed] [Google Scholar]
  21. Kao P. N., Karlin A. Acetylcholine receptor binding site contains a disulfide cross-link between adjacent half-cystinyl residues. J Biol Chem. 1986 Jun 25;261(18):8085–8088. [PubMed] [Google Scholar]
  22. Machlin S. M., Hanson R. S. Nucleotide sequence and transcriptional start site of the Methylobacterium organophilum XX methanol dehydrogenase structural gene. J Bacteriol. 1988 Oct;170(10):4739–4747. doi: 10.1128/jb.170.10.4739-4747.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Matsushita K., Shinagawa E., Adachi O., Ameyama M. Reactivity with ubiquinone of quinoprotein D-glucose dehydrogenase from Gluconobacter suboxydans. J Biochem. 1989 Apr;105(4):633–637. doi: 10.1093/oxfordjournals.jbchem.a122716. [DOI] [PubMed] [Google Scholar]
  24. Nunn D. N., Day D., Anthony C. The second subunit of methanol dehydrogenase of Methylobacterium extorquens AM1. Biochem J. 1989 Jun 15;260(3):857–862. doi: 10.1042/bj2600857. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Richardson I. W., Anthony C. Characterization of mutant forms of the quinoprotein methanol dehydrogenase lacking an essential calcium ion. Biochem J. 1992 Nov 1;287(Pt 3):709–715. doi: 10.1042/bj2870709. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Schiering N., Kabsch W., Moore M. J., Distefano M. D., Walsh C. T., Pai E. F. Structure of the detoxification catalyst mercuric ion reductase from Bacillus sp. strain RC607. Nature. 1991 Jul 11;352(6331):168–172. doi: 10.1038/352168a0. [DOI] [PubMed] [Google Scholar]
  27. Smith A., Hill S., Anthony C. A haemoprotein is not involved in the control by oxygen of enteric nitrogenase synthesis. J Gen Microbiol. 1988 Jun;134(6):1499–1507. doi: 10.1099/00221287-134-6-1499. [DOI] [PubMed] [Google Scholar]
  28. Tamaki T., Fukaya M., Takemura H., Tayama K., Okumura H., Kawamura Y., Nishiyama M., Horinouchi S., Beppu T. Cloning and sequencing of the gene cluster encoding two subunits of membrane-bound alcohol dehydrogenase from Acetobacter polyoxogenes. Biochim Biophys Acta. 1991 Feb 16;1088(2):292–300. doi: 10.1016/0167-4781(91)90066-u. [DOI] [PubMed] [Google Scholar]
  29. Verwiel P. E., Frank J., Verwiel E. J. Characterization of the second prosthetic group in methanol dehydrogenase from hyphomicrobium X. Eur J Biochem. 1981 Aug;118(2):395–399. doi: 10.1111/j.1432-1033.1981.tb06415.x. [DOI] [PubMed] [Google Scholar]

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