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[Preprint]. 2025 Feb 12:2024.08.30.24312811. Originally published 2024 Aug 31. [Version 2] doi: 10.1101/2024.08.30.24312811

Routine Testing for Chlamydia and Gonorrhea in an HIV Pre-Exposure Prophylaxis Program in Hanoi, Vietnam: Implications for Low- and Middle-Income Countries

Paul C ADAMSON 1, Hao TM BUI 2, Loc Q PHAM 2, Phuong T TRUONG 3, Ngan T LE 3, Giang M LE 2,*, Jeffrey D KLAUSNER 4,*
PMCID: PMC11383485  PMID: 39252902

Abstract

Objectives:

To assess the prevalence, anatomical distribution, and correlates of Neisseria gonorrhoeae (NG) and Chlamydia trachomatis (CT) infections within an HIV pre-exposure prophylaxis (PrEP) program in Hanoi, Vietnam.

Design:

Cross-sectional, observational study

Methods:

Between January-December 2022, HIV PrEP program clients who were male at birth, ≥16 years old, reported ≥1 male sex partner in the prior 12 months, were enrolled. A questionnaire collected sociodemographics, sexual behaviors, and clinical data. CT/NG testing was performed on self-collected urine, rectal, and pharyngeal specimens. Multivariate logistic regression was used to identify factors associated with infections.

Results:

Among 529 participants, the prevalence of CT or NG was 28.9% (153/529). The prevalence of NG was 14.4% (76/529) and highest for pharyngeal infections (11.7%; 62/528), while for CT, the prevalence was 20.4% (108/529) and highest for rectal infections (15.0%; 74/493). Symptoms in the prior week were reported by 45.8% (70/153) of those with CT or NG infections. Among asymptomatic participants, there was a low prevalence of urethral CT (3.1%; 14/457) and NG (0.9%; 4/457). Condomless anal sex (aOR= 1.98; 95% CI: 1.27, 3.09) and sexualized drug use in the prior 6 months (aOR= 1.71; 95% CI: 1.09, 2.69) were associated with CT/NG infections.

Conclusions:

The study found a high prevalence of CT/NG infections, particularly pharyngeal and rectal infections, within an HIV PrEP program in Hanoi, Vietnam. The findings suggest testing for urethral infections among asymptomatic individuals is of limited value. Further research is needed for STI prevention strategies and updated guidelines for CT/NG screening in HIV PrEP programs in low- and middle-income countries.

Keywords: Neisseria gonorrhoeae, Chlamydia trachomatis, HIV Pre-Exposure Prophylaxis, Sexually Transmitted Infections, Low- and Middle-Income Countries, Men who have sex with men

Introduction

Sexually transmitted infections (STIs) are a significant public health challenge globally. Neisseria gonorrhoeae and Chlamydia trachomatis are the two most common bacterial STIs. Men who have sex with men (MSM) are disproportionately affected by STIs.[1,2] MSM on HIV pre-exposure prophylaxis (PrEP) have high frequencies of bacterial STIs. [35] Thus, major HIV PrEP guideline groups recommend routine screening for C. trachomatis and N. gonorrhoeae among MSM on HIV PrEP, including testing at multiple anatomic sites of infection.

In low- and middle-income countries (LMICs), HIV PrEP programs are expanding, yet data on STIs among MSM in HIV PrEP programs are limited. Understanding the epidemiology of STIs in these settings is important for planning and implementation of HIV PrEP programs. Moreover, in many LMIC settings, the availability of molecular C. trachomatis and N. gonorrhoeae testing is limited and the costs associated testing remain significant barriers for testing.[6,7] Identifying clinical and behavioral risk factors associated with those infections can help optimize diagnosis and prevention of STIs, particularly in LMIC settings where resources might be limited and there is ongoing rapid scale-up of HIV PrEP services.

Vietnam is a LMIC where HIV PrEP became available in 2018. Prior to that, baseline data from the Hanoi-MSM (HIM) study found a high prevalence of C. trachomatis (22%) and N. gonorrhoeae (12%) among MSM without HIV, who subsequently were enrolled into the pilot HIV PrEP project.[8] Currently, HIV PrEP guidelines in Vietnam recommend quarterly screening for C. trachomatis and N. gonorrhoeae at all sites with potential exposure[9]; however, the clients are responsible for covering the majority of the costs of those tests, which greatly limits testing uptake and available data on infections. The aims of this study are to fill gaps in research on STIs among MSM on HIV PrEP in Vietnam, since the rollout of HIV PrEP. The study objectives were to determine the prevalence of urethral, rectal, and pharyngeal N. gonorrhoeae and C. trachomatis infections within an HIV PrEP program in Hanoi, Vietnam, as well as to determine behavioral and clinical factors associated with N. gonorrhoeae and C. trachomatis infections.

Methods:

Study design and population

This was an observational, cross-sectional study from January 2022 to December 2022. The study was conducted within the HIV PrEP program at the Sexual Health and Promotion (SHP) Clinic at Hanoi Medical University. Study participants were eligible if they were male sex at birth, aged 16 years or older, reported having sex with men or transgender women in prior 12 months, and were enrolled in, or presenting for enrollment into, the HIV PrEP program; exclusion criteria were if they had C. trachomatis or N. gonorrhoeae testing done in the prior 3 months, unless they reported acute STI symptoms on the day of enrollment. The exclusion criteria were included to align closely with the HIV PrEP program recommendations. Participants were allowed to participate in the study more than once. Eligible participants were approached in the clinic and the study’s objectives and procedures were explained by study research staff.

Data collection

Demographic, behavioral, and clinical characteristics were collected using a tablet self-administered survey. Sexual behaviors were self-reported and included: number of sex partners in the prior month as the combined number of male, female, and transgender sex partners, anal sex position(s), condomless anal intercourse in the prior month, group sex (defined as having more than one sex partner at the same encounter), or having sex with partners met via mobile apps in the prior 6 months. Sexualized drug use was considered if the participant reported using a substance (heroine, ketamine, ecstasy, methamphetamine, gamma hydroxybutyrate or gamma butyrolactone, poppers, or prostaglandin E medications) in the prior 6 months to enhance sexual pleasure. Poppers are commonly included in the definition of sexualized drug use in the Asia Pacific region.[10] History of STIs in the prior three months was obtained by self-report.

Participants were asked about any genitourinary, rectal, or pharyngeal symptoms in the prior one week. Genitourinary symptoms were classified as any of the following: pain with urination, discharge, bleeding, pruritis, testicular pain, lymphadenopathy, or ulcers. Rectal symptoms were classified as any of the following: tenesmus, dyschezia, pruritis, bleeding, discharge, ulcers, or diarrhea. Pharyngeal symptoms included pain or itching in the throat.

Sample collection, testing, and treatment

Study participants received instructions on providing rectal, pharyngeal, and urine specimens for testing by study staff and with visual aids. Clinician-collected samples were obtained if participants preferred or were unable to perform self-collection. Study specimens were collected using either the Alinity m multi-Collect Specimen Collection Kits (Abbott Molecular, USA) or cobas PCR Urine or Swab Sample Kits (Roche Diagnostics, Branchburg, NJ, USA). Specimens were stored in the clinic and transported daily to the laboratory. Testing was performed using either the Alinity m STI Assay (Abbott Molecular, USA) or the cobas 4800 CT/NG assay (Roche Diagnostics, Branchburg, NJ, USA) according to manufacturer’s instructions. Test results for C. trachomatis and N. gonorrhoeae were either positive, negative, or inconclusive, in the event of failed internal controls or the presence of inhibitors. Participants were informed of their test results. For those found to have infections, free treatment was offered. For C. trachomatis infections, doxycycline 100mg by mouth twice daily for 7 days was provided. For N. gonorrhoeae infections, ceftriaxone 500mg intramuscular injection once was the preferred treatment offered; cefixime 800mg by mouth once was provided as an alternative treatment.

Data analysis

The primary outcome was the prevalence of C. trachomatis or N. gonorrhoeae infections at different anatomic sites. The study sample size was determined based on available resources, staffing, and a defined study duration (2022). Rather than relying on formal sample size calculations, recruitment was intentionally inclusive of all eligible study participants, that could be enrolled based on research timing and staffing. A sample size of 500 would have a reasonable estimate of infection prevalence with a margin of error <5%. Descriptive statistics were performed for demographic, behavioral and clinical data; percentages for categorical variables, or median and interquartile range for continuous variables, were reported. Categorical variables between those with and without C. trachomatis or N. gonorrhoeae infections were compared using Pearson’s Chi-squared test and Fisher’s exact test, when frequencies were low, and nonparametric continuous variables were compared using Wilcoxon rank-sum tests.

Logistic regression modeling was used to evaluate factors associated with N. gonorrhoeae and C. trachomatis infections separately as well as the outcome of having either infection. Variables with p-values < 0.20 in univariate comparisons were included in the multivariable logistic regression models; except for age, which was included in the final models. The number of sex partners in the prior month was dichotomized to above or below the median (0–1 and ≥2) to improve interpretation and model fit. For participants with multiple study visits, data analysis was restricted to their first participation. A variance inflation factor was used to measure for multicollinearity between variables in the multivariate logistic regression. Variables with missing data were excluded from the logistic regression models. P-values ≤ 0.05 was defined as statistical significance. All data analyses were performed using STATA version 18 (StataCorp LLC, College Station, TX, USA).

Ethics

The study was approved by the Institutional Review Boards of Hanoi Medical University (HMUIRB580), the University of California, Los Angeles, and the University of Southern California. All study participants provided written informed consent. People aged 16 years or older are eligible for the HIV PrEP program, thus study eligibility included these individuals, who could participate in the study with assent and parental consent. Participants were compensated 200,000 VND (~9 USD) for their time and effort of study participation.

Results

Participant Characteristics

From January to December 2022, there were 529 participants enrolled into the study among 775 approached and 538 screened. The primary reasons for refusal of those who were approached, but who did not undergo screening, was “too busy/not enough time” or “will consider next time.” Multiple visits occurred for 134 participants: 116 with two, 16 with three, and two with four visits. Among the study participants, 81.6% (432/529) identified as a man, 1.7% (9/529) identified as transgender woman, and 16.6% (88/529) identified as gender nonconforming. (Table 1). The median age among all participants was 25.1 years (IQR: 21.7–29.5). There were 29.1% (154/529) currently undergoing university or post-secondary training, while 61.1% (323/529) had completed university or post-secondary training.

Table 1.

Baseline demographic, behavioral, and clinical characteristics of 529 participants enrolled from an HIV PrEP program clinic in Hanoi, Vietnam.

Overall (N = 529) Positive for C. trachomatis (N=108) Positive for N. gonorrhoeae (N=76) Positive for C. trachomatis or N. gonorrhoeae (N=153)
n (%) n (%) p-value n (%) p-value n (%) p-value
Median Age (IQR) 25.1 (21.7–29.5) 25.3 (21.1 – 29.7) 0.869 24.8 (22.1 – 27.2) 0.281 25.1 (21.5 – 28.3) 0.336
Age group 0.644 0.243 0.834
 16– 24 years old 261 (49.3) 51 (19.5) 38 (14.6) 75 (28.7)
 25– 34 years old 221 (41.8) 45 (20.4) 35 (15.8) 66 (29.9)
 35 – 63 years old 47 (8.9) 12 (25.5) 3 (6.4) 12 (25.5)
Gender self-identification 0.126 0.316 0.232
 Man 432 (81.7) 85 (19.6) 58 (13.4) 121 (28.0)
 Transgender woman 9 (1.7) 0 1 (11.1) 1 (11.1)
 Other/Unsure* 88 (16.6) 23 (26.1) 17 (19.3) 31 (35.2)
Education 0.687 0.942 0.797
 High school or below 52 (9.8) 13 (25.0) 8 (15.4) 17 (32.7)
 In post-secondary training 154 (29.1) 31 (20.1) 21 (13.6) 45 (29.2)
 Completed post-secondary training or higher 323 (61.1) 64 (19.8) 47 (14.6) 91 (28.2)
Monthly income in million VND (median, IQR) 9.0 (5 – 15) 8.5 (5–14) 0.813 8 (4.5 – 14.5) 0.566 8 (5 – 14.5) 0.493
Employed 419 (79.2) 84 (20.0) 0.682 63 (15.0) 0.392 123 (29.4) 0.668
Gender of sex partners prior 6 months 0.711 0.327 0.502
 Men only 474 (89.6) 96 (20.3) 73 (15.4) 141 (29.7)
 Women only 13(2.5) 2 (15.4) 1 (7.7) 2 (15.4)
 Men and women 33 (6.2) 9 (27.3) 2 (6.0) 9 (27.3)
 No sex partners 9 (1.7) 1 (11.1) 0 1 (11.1)
Number of sex partners in prior 1 month (n = 520) # 1 (1 – 2) 2 (1 – 3) <0.001 2 (1 – 2) 0.150 2 (1 – 3) <0.001
Anal sex with male partners in prior 1 month (n = 447) # 396 (88.4) 95 (24.0) 0.043 64 (16.2) 0.219 131 (33.1) 0.043
Anal sex position with male partner (n = 396) # 0.633 0.109 0.385
 Insertive anal sex always 137 (34.6) 29 (21.2) 22 (16.1) 44 (32.1)
 Receptive anal sex always 149 (37.6) 38 (25.5) 18 (12.1) 45 (30.2)
 Both insertive and receptive 110 (27.8) 28 (25.5) 24 (21.8) 42 (38.2)
Condomless anal sex in prior 1 month (n = 396) # 203 (51.3) 63 (31.0) 0.001 39 (19.2) 0.091 83 (40.9) 0.001
Vaginal sex with female partners in prior month (n = 39) # 38 (7.2) 8 (21.1) 0.064 2 (5.3) 0.814 8 (21.1) 0.064
Deep kissing in prior week (n = 302) # 260 (86.1) 61 (23.5) 0.700 41 (15.8) 0.518 85 (32.7) 0.823
Any group sex, prior 6 months 65 (12.3) 13 (20.0) 0.929 14 (21.5) 0.078 22 (33.8) 0.350
Sexualized drug use with poppers or erectile dysfunction medications, prior 6 months 235 (44.4) 67 (28.5) <0.001 40 (17.0) 0.120 87 (37.0) <0.001
Any sexualized drug use, prior 6 months 239 (45.4) 68 (28.4) <0.001 40 (16.7) 0.169 88 (36.8) <0.001
Met sex partners via mobile apps, prior 6 months 297 (56.1) 66 (22.2) 0.244 55 (18.5) 0.002 97 (32.7) 0.032
Pharyngeal symptoms in prior week 126 (23.8) 21 (16.7) 0.232 20 (15.9) 0.581 33 (26.2) 0.438
Rectal symptoms in prior week 87 (16.5) 25 (28.7) 0.035 15 (17.2) 0.403 29 (33.3) 0.321
Genitourinary symptoms in prior week 72 (13.6) 17 (23.6) 0.469 15 (20.8) 0.092 26 (36.1) 0.148
Any genitourinary symptoms at the day of enrollment 14 (2.7) 7 (50.0) 0.012 8 (57.1) <0.001 12 (85.7) <0.001
Any symptoms in prior week 217 (41.0) 49 (22.6) 0.303 41 (18.9) 0.013 70 (32.3) 0.158
Self-reported STI diagnosis in the prior 3 months 29 (5.5) 6 (20.7) 0.970 6 (20.7) 0.318 9 (31.0) 0.796
Used antiseptic mouthwash in the previous month 286 (54.1) 65 (22.7) 0.152 38 (13.3) 0.442 84 (29.4) 0.805

Note: Column percentages shown for first column. Remaining values are shown as row percentages.

*

Participants who were gender nonconforming or gender incongruent, or unsure of their gender identity.

Wilcoxon rank-sum (Mann-Whitney) test was performed

Fisher’s exact test was performed, Chi-Squared tests were performed otherwise

§

Variables that contains missing values because “Don’t know” or “Don’t remember” choices were treated as missing.

#

Sample size was lower than 529 due to skip pattern (e.g., sample size for “Condomless anal sex” was among people who reported engaging in anal sex)

In the prior six months, 95.8% (507/529) reported only male sex partners; the median number of sex partners in the prior month was 1 (IQR: 1–2). (Table 1). Anal sex in the prior 6 months was reported by 88.4% (396/529), of which 51.2% reported condomless anal sex in the prior month. In the prior 6 months, group sex was reported by 12.3% (65/529) and sexualized substance use was reported by 45.4% (240/529). A history of a STI in the prior 3 months was reported by 5.5% (29/529), with 69.0% (20/29) of those being syphilis. Additional sexual behavior data are shown in Table 1.

C. trachomatis and N. gonorrhoeae infections

All participants submitted a urine sample for testing, a pharyngeal specimen was not collected for one (0.2%) participant, while 11 (2.1%) participants refused rectal specimen collection. In total, 28.9 % (153/529) participants had C. trachomatis or N. gonorrhoeae infections at any anatomical site. The prevalence of C. trachomatis was 20.4% (108/529) and 14.3% (76/529) for N. gonorrhoeae; 5.9% (31/529) of participants had C. trachomatis and N. gonorrhoeae co-infections (Table 1). Among the 153 participants with either C. trachomatis or N. gonorrhoeae infections, the median age was 25.1 years (IQR: 21.5 – 28.3). The median number of sex partners in the prior month was 2 (IQR: 1–3), 14.2% (22/155) reported group sex in the prior month, and 60.1% (94/155) reported sexualized substance use. Of the 153 with C. trachomatis or N. gonorrhoeae infections, 45.8% (70/153) reported any symptoms in the prior week; 33 (21.6%) reported pharyngeal symptoms, 29 (19.0%) reported rectal symptoms, and 26 (17.0%) reported urethral symptoms. More participants with C. trachomatis or N. gonorrhoeae infections reported having symptoms on the day of enrollment, compared to those without infections (9.2% vs. 3.0%, p=0.001).

C. trachomatis and N. gonorrhoeae infections by anatomic site are shown in Table 2. The prevalence of C. trachomatis was highest in the rectum (15.0%; 74/493) and 3.4% (18/529) had infections in multiple anatomic sites. For N. gonorrhoeae, pharyngeal site infections were most prevalent (11.7%; 62/528) and 6.0% (32/529) had infections at multiple anatomic sites. Among participants with either C. trachomatis or N. gonorrhoeae, the prevalence of rectal infections was 19.1% (94/493) and 9.3% (49/529) had infections at multiple anatomic sites. For rectal specimens, 24 (4.5%) were inconclusive for both infections and one additional result was inconclusive for C. trachomatis.

Table 2.

Prevalence of Chlamydia trachomatis and Neisseria gonorrhoeae infections by anatomic site among 529 participants enrolled from an HIV PrEP program clinic in Hanoi, Vietnam.

Anatomic Site C. trachomatis
(n/N*, %)
N. gonorrhoeae
(n/N*, %)
C. trachomatis or N. gonorrhoeae
(n/N*, %)
C. trachomatis and N. gonorrhoeae
(n/N*, %)
Total Infections (Any Site) 108 (20.4) 76 (14.4) 153 (28.9) 31 (5.9)
Single Site Infections
 Pharyngeal only 19/528 (3.6) 32/528 (6.1) 41/528 (7.7) 3/528 (0.6)
 Rectal only 57/493 (11.6) 10/494 (2.0) 52/493 (10.6) 4/493 (0.8)
 Urethral only 14/529 (2.7) 2/529 (0.4) 11/529 (2.1) 0/529 (0)
Multisite Infections
 Pharyngeal and rectal 9/493 (1.8) 18/494 (3.6) 26/494 (5.3) 13/493 (2.6)
 Pharyngeal and urethral 1/528 (0.2) 5/528 (1.0) 7/528 (1.3) 3/528 (0.6)
 Urethral and rectal 7/493 (1.4) 2/494 (0.4) 7/493 (1.4) 1/493 (0.2)
 Pharyngeal, rectal, and urethral 1/493 (0.2) 7/494 (1.4) 9/494 (1.8) 7/493 (1.4)
Any pharyngeal 30/528 (5.7) 62/528 (11.7) 83/528 (15.7) 26/528 (4.9)
Any rectal 74/493 (15.0) 31/493 (6.3) 94/493 (19.1) 25/493 (5.1)
Any urethral 23/529 (4.3) 16/529 (3.0) 34/529 (6.4) 11/529 (2.1)

The prevalence of C. trachomatis or N. gonorrhoeae infections by anatomic site, stratified by reported symptoms in the prior week are shown in Figure 1. Among those reporting rectal symptoms in the prior week, the prevalence of having a rectal infection with C. trachomatis or N. gonorrhoeae was 27.2% (22/81), followed by 25.0% (18/72) for urethral symptoms and urethral infections, and 18.3% (23/126) for pharyngeal symptoms and pharyngeal infections. Among those who did not report symptoms in the prior week, the prevalence of urethral C. trachomatis was 3.1% (14/457) and 0.9% (4/457) for N. gonorrhoeae. For both infections, the prevalence of both rectal and urethral infections were higher among those reporting symptoms in the prior week; there were no differences in the prevalence of pharyngeal infections by symptom status for either infection.

Figure 1.

Figure 1.

Prevalence of C. trachomatis (Panel A) and N. gonorrhoeae (Panel B) infections at pharyngeal, rectal, and urethral sites, stratified by reported symptoms at that site in the prior week.

*p-value ≤0.05; **p-value ≤0.01

Factors associated with C. trachomatis and N. gonorrhoeae infections

In the multivariate logistic regression models, having either C. trachomatis or N. gonorrhoeae infection was associated with condomless anal intercourse in the prior month (aOR: 1.98; 95% CI: 1.27–3.09) and sexualized drug use in the prior 6 months (aOR: 1.71; 95% CI: 1.09, 2.69). (Table 3) Rectal and urethral symptoms in the prior week were associated with infections in univariate analyses, but not in the multivariate model (aOR: 1.19; 95% CI: 0.73, 1.94). When examining each infection separately, meeting sex partners in mobile apps in the prior 6 months was an independent risk factor for N. gonorrhoeae infections (aOR: 2.32; 95% CI: 1.19, 4.53), but not C. trachomatis (aOR: 0.83; 95% CI: 0.49, 1.43). Both condomless anal sex in the prior month (aOR: 2.10; 95% CI: 1.27–3.45) and sexualized drug use in the prior 6 months (aOR: 2.20; 95% CI: 1.32–3.68) were associated with C. trachomatis, but not N. gonorrhoeae. There was no evidence of multicollinearity among variables in the multivariate logistic regression.

Table 3.

Multivariable logistic regression with factors associated with C. trachomatis only, N. gonorrhoeae only, and C. trachomatis or N. gonorrhoeae infections.

C. trachomatis N. gonorrhoeae C. trachomatis or N. gonorrhoeae
Characteristics aOR (95% CI) p-value aOR (95% CI) p-value aOR (95% CI) p-value
Age group
 16 to < 25 years old 1.00 1.00 1.00
 25 to < 35 years old 0.75 (0.45, 1.27) 0.284 1.03 (0.58, 1.84) 0.912 0.81 (0.51, 1.30) 0.387
 ≥ 35 years old 1.27 (0.58, 2.80) 0.550 0.39 (0.11, 1.38) 0.144 0.76 (0.36, 1.64) 0.492
Two or more sex partners in prior 1 month 1.66 (0.97, 2.86) 0.066 1.16 (0.63, 2.14) 0.638 1.52 (0.94, 2.46) 0.086
Condomless anal sex in prior 1 month 2.10 (1.27, 3.45) 0.004 1.51 (0.86, 2.67) 0.152 1.98 (1.27, 3.09) 0.002
Sexualized drug use in prior 6 months 2.20 (1.32, 3.68) 0.003 1.09 (0.61, 1.94) 0.774 1.71 (1.09, 2.69) 0.020
Met sex partners via mobile apps 0.83 (0.49, 1.43) 0.513 2.32 (1.19, 4.53) 0.013 1.21 (0.74, 1.96) 0.445
Any anal or urethral symptoms in prior week 1.44 (0.84, 2.45) 0.185 1.30 (0.72, 2.36) 0.385 1.19 (0.73, 1.94) 0.491
Used an antiseptic mouthwash in the prior 1 month 1.15 (0.70, 1.87) 0.583 0.72 (0.41, 1.25) 0.240 0.85 (0.55, 1.32) 0.468
Model information
 Sample size included 396 396 396
 Hosmer-Lemeshow p-value 0.5244 0.5412 0.4685
 McFadden’s R2 0.070 0.053 0.053
 Log likelihood −202.98235 −165.80362 −237.93177

Discussion

In this study including 529 primarily MSM in an HIV PrEP program in Hanoi, Vietnam, testing for C. trachomatis and N. gonorrhoeae at multiple anatomic sites identified a high prevalence (29%) of infections. Rectal infections were most common for C. trachomatis (14%), while pharyngeal infections were most common for N. gonorrhoeae (11%), demonstrating the utility of testing at multiple anatomic sites for the detection of infections outside of the genital tract. While the prevalence of urethral and rectal C. trachomatis and N. gonorrhoeae infections were higher among those who reported symptoms at those sites in the prior week, a majority of overall infections (54%) were detected among those without symptoms, underscoring the limitations of relying on syndromic management as an infection control strategy in this setting. These findings highlight the opportunity to enhance STI diagnosis and treatment within HIV PrEP programs in LMICs.

Our study provides important data on routine testing for C. trachomatis and N. gonorrhoeae within a large HIV PrEP program in a LMIC setting, where prevalence data are limited. A recent meta-analysis of STIs among people in HIV PrEP programs estimated a pooled prevalence of C. trachomatis or N. gonorrhoeae was 24%, suggesting a slightly higher burden among participants in our study population.[5] However, that study highlighted the scarcity of data from LMICs, which makes comparisons difficult, but the study did not find a significant difference in prevalence of chlamydia or gonorrhea by country income level. There is a paucity of published prevalence estimates of C. trachomatis and N. gonorrhoeae among MSM on HIV PrEP from other nearby countries in Asia, which could provide further context. One study done among adolescent MSM and transgender women in Thailand found a C. trachomatis prevalence of 15% and N. gonorrhoeae prevalence of 4.5%, estimates that are much lower than our study, although pharyngeal testing was not performed in that study which would likely account for some of that difference.[11] The prevalence of infections observed in our study align with existing evidence from other, largely high-income, settings indicating a high burden of STIs among MSM on HIV PrEP.[6,12]

Among participants in our study, we observed those reporting condomless anal sex were about twice as likely to have C. trachomatis or N. gonorrhoeae infection and those having sexualized drug use in the prior 6 months were 70% more likely to have C. trachomatis or N. gonorrhoeae infection. Identifying factors associated with infections could help to focus testing among those at highest risk for infections. For example, of the total 153 C. trachomatis or N. gonorrhoeae infections in our study, testing those reporting either condomless anal sex or sexualized drug use in the prior 6 months would have detected 75% of those infections. Meeting sex partners on mobile apps is increasingly common globally and this behavior was associated with twice the odds of N. gonorrhoeae, but not C. trachomatis, infections in our study, a finding that was also observed in our previous work in a similar study population.[8] Possible explanations for this observation might be there is a higher prevalence of N. gonorrhoeae among certain sexual networks of online mobile app users or there is more oral sex within that network, since the majority of these infections were pharyngeal. These findings indicate that focused testing for N. gonorrhoeae among those meeting sex partners on apps could be a strategy to improve gonorrhea control.

We found that reporting rectal or urethral symptoms in the prior week was not associated with infections in multivariate analysis, highlighting the difficulty of using symptoms to identify infections, given a high proportion of these types of infections are asymptomatic.[13] Despite this, the prevalence of rectal and urethral C. trachomatis and N. gonorrhoeae was significantly higher among those who reported symptoms in the prior week, suggesting symptoms are still correlated with a higher frequency of infections at those sites. Our findings suggest that testing for urethral infections among asymptomatic individuals is of limited value, as the prevalence in this group was very low, 0.9% for N. gonorrhoeae and 3.1% for C. trachomatis; furthermore, testing only at urethral sites would have missed more than three-quarters (77.8%) of these infections. The low positivity coupled with the high costs of testing, approximately 25–32 USD for one site C. trachomatis/N. gonorrhoeae testing in Vietnam, are important considerations, especially as the costs are typically managed by the patient, outside of research settings. Pooled testing, where samples from one individual from multiple anatomic sites are combined into one sample for testing, is an approach that might be cost-saving but is associated with some compromise in test sensitivity.[14,15] However, anatomic sites of infection are important for treatment and follow-up, particularly with regard to antimicrobial resistance in N. gonorrhoeae, which would limit the cost savings of this approach in a high prevalence setting such as ours. Further research on the implementation and cost-effectiveness of pooled testing within HIV PrEP programs in LMICs would help to provide further guidance.

Our study further highlights the high prevalence of C. trachomatis and N. gonorrhoeae infections among people in HIV PrEP programs and the need to improve evidence-based guidelines for testing, particularly in LMICs. Given the high prevalence and incidence of STIs in HIV PrEP programs, many guidelines recommend quarterly screening for C. trachomatis and N. gonorrhoeae among MSM on HIV PrEP.[16,17] Yet while some modeling studies support quarterly screening to reduce the population prevalence, the clinical and public health evidence supporting the frequency of testing is lacking and the populations coverage needed to achieve a population-benefit of decreased prevalence is much higher than observed in practice.[1822]

The recent Gonoscreen Study, a randomized-controlled trial evaluating quarterly screening for C. trachomatis and N. gonorrhoeae compared to no screening among MSM in Belgium found quarterly screening was associated with fewer C. trachomatis infections and complications, but observed no difference among N. gonorrhoeae infections.[23] Additional research on alternative screening frequencies, e.g. - every 6 months or annually, and in different settings could provide further evidence on the public health benefits of different screening approaches. Beyond the frequency of screening, there is also a larger debate about the utility of screening for asymptomatic STIs in populations of MSM, particularly those on HIV PrEP.[24,25] While C. trachomatis and N. gonorrhoeae infections increase the risk for HIV transmission and provide a strong rationale for using these as an entry point for HIV PrEP,[26] the increased risk for HIV acquisition caused by bacterial STIs is largely mitigated among those on HIV PrEP.[27,28] Moreover, antimicrobial resistance is one potential consequence of increased screening and treatment and is a significant concern, particularly for N. gonorrhoeae and Mycoplasma genitalium; increased antibiotic consumption was observed among those randomized to quarterly screening in the Gonoscreen study.[23] Antimicrobial resistance in N. gonorrhoeae is particularly concerning in Vietnam, where the prevalence of ceftriaxone resistance, the first-line agent for treatment, is more than 20% in some settings.[29]

Our study findings must be interpreted in light of the following limitations. First, the study population might have been subject to selection bias. Efforts were made to expand inclusivity by simplifying the study eligibility criteria to reflect that of the HIV PrEP program. Still, it was not possible to recruit all PrEP program clients and 70% of those who were recruited agreed to be screened; thus, it is possible those who chose not to participate were different than those who participated. Second, our study outcome was the prevalence of C. trachomatis and N. gonorrhoeae infections at each visit, so while participants were allowed to participate more than once, few did, and we were unable to estimate the incidence of C. trachomatis or N. gonorrhoeae infections. Third, our study population of primarily MSM were largely well-educated, employed, and living in Hanoi, the second most populated city in Vietnam, and might not be generalizable to other populations or settings. Our study took place within the largest HIV PrEP program in Hanoi, which is a strength of our study.

Conclusion

Our findings provide further evidence of the high prevalence of C. trachomatis and N. gonorrhoeae infections among people on HIV PrEP, including the high proportions of rectal, pharyngeal, and asymptomatic infections. Despite the high prevalence of infections, the high cost of molecular STI testing is a major barrier to implementing routine testing in HIV PrEP programs in LMICs.[6] Testing for urethral C. trachomatis and N. gonorrhoeae infections among those without urethral symptoms is likely to be of limited value, based on our findings. Further research is needed to establish evidence-based recommendations on the role and frequency of testing for asymptomatic infections, including the cost-effectiveness of different approaches. Biomedical interventions like doxycycline prophylaxis and vaccinations are promising tools for STI prevention and further research is needed on the effectiveness and implementation in LMIC settings, where key factors such as antimicrobial resistance and differences in user preferences will influence their impact.

Acknowledgements

The research was supported by a grant of no charge materials from Roche Molecular Systems and Abbott Molecular.

Conflicts of Interest and Funding:

This work was supported by the US National Institute of Allergy and Infectious Diseases (R21 AI157817 to G. M. L and J. D. K.) and the Fogarty International Center (K01TW012170 to P. C. A). The funders had no role in the data collection, analysis, manuscript preparation, or decision to publish. JDK reports consulting fees from Abbott in the prior 12 months. All other authors report no potential conflicts of interest.

Footnotes

Publication history: This manuscript was previously posted to medRxiv: doi: https://doi.org/10.1101/2024.08.30.24312811

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