Table 2.

Comparative SNP analysis of BC11-1 with other B. contaminans strains.

Reference Strain	Sample Strain	Start Syn	Stop Syn	Start Nonsyn	Stop Nonsyn	Premature Stop	Synonymous	Nonsynonymous	Total CDS SNP	Intergenic	Total SNP
MS14	BC11-1	2	36	14	10	32	29,645	10,559	40,285	9428	49,713
NZ	BC11-1	29	130	96	91	267	82,245	38,908	121,623	32,390	154,013
CH1	BC11-1	4	115	51	42	91	88,455	30,610	119,319	31,884	151,203
XL-73	BC11-1	5	113	52	43	93	88,209	30,527	118,998	31,908	150,906
SBC01	BC11-1	8	128	53	44	108	89,828	30,492	120,579	32,476	153,055
LMG 23361	BC11-1	2	108	51	38	80	81,480	28,223	109,934	28,754	138,688
toggle 1	BC11-1	5	113	52	47	104	88,096	30,969	119,337	32,143	151,480
SCAID TST1-2021	BC11-1	6	105	52	45	126	82,822	30,371	113,440	30,181	143,621

Notes: genome sequences of other 7 strains were used as references when compared with that of BC11-1; syn stands for synonymous; nonsyn stands for nonsynonymous.