Skip to main content
Biochemical Journal logoLink to Biochemical Journal
. 1985 Mar 1;226(2):601–606. doi: 10.1042/bj2260601

Chemical synthesis and papain-catalysed hydrolysis of N-alpha-benzyloxycarbonyl-L-lysine p-nitroanilide.

N E Mackenzie, J P Malthouse, A I Scott
PMCID: PMC1144749  PMID: 3922354

Abstract

The chemical synthesis of N-alpha-benzyloxycarbonyl-L-lysine p-nitroanilide (Z-Lys-pNA) is described in detail. The pH-dependence of the catalytic parameters kcat,' Km and kcat./Km for the papain-catalysed hydrolysis of Z-Lys-pNA are determined. kcat. and Km are pH-independent between pH 5 and pH 7.42, but the pH-dependence of kcat./Km is bell-shaped, decreasing at high and low pH values with pKa values of 7.97 and 4.40 respectively. The catalytic parameters and their pH-dependence are shown to be similar to those reported for other anilide substrates and it is concluded that the Km value of 0.01 mM previously reported [Angelides & Fink (1979) Biochemistry 18, 2355-2369] is incorrect. The possibility of accumulating a tetrahedral intermediate during the papain-catalysed hydrolysis of Z-Lys-pNA is discussed.

Full text

PDF
601

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Angelides K. J., Fink A. L. Mechanism of Action of papain with a specific anilide substrate. Biochemistry. 1979 May 29;18(11):2355–2363. doi: 10.1021/bi00578a034. [DOI] [PubMed] [Google Scholar]
  2. Angelides K. J., Fink A. L. Mechanism of thiol protease catalysis: detection and stabilization of a tetrahedral intermediate in papain catalysis. Biochemistry. 1979 May 29;18(11):2363–2369. doi: 10.1021/bi00578a035. [DOI] [PubMed] [Google Scholar]
  3. Baines B. S., Brocklehurst K. A necessary modification to the preparation of papain from any high-quality latex of Carica papaya and evidence for the structural integrity of the enzyme produced by traditional methods. Biochem J. 1979 Feb 1;177(2):541–548. doi: 10.1042/bj1770541. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Baines B. S., Brocklehurst K. A spectrophotometric method for the detection of contaminant chymopapains in preparations of papain. Selective modification of one type of thiol group in the chymopapains by a two-protonic-state reagent. Biochem J. 1978 Jul 1;173(1):345–347. doi: 10.1042/bj1730345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Berger A., Schechter I. Mapping the active site of papain with the aid of peptide substrates and inhibitors. Philos Trans R Soc Lond B Biol Sci. 1970 Feb 12;257(813):249–264. doi: 10.1098/rstb.1970.0024. [DOI] [PubMed] [Google Scholar]
  6. Brocklehurst K., Carlsson J., Kierstan M. P., Crook E. M. Covalent chromatography. Preparation of fully active papain from dried papaya latex. Biochem J. 1973 Jul;133(3):573–584. doi: 10.1042/bj1330573. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Brocklehurst K., Little G. Reactivities of the various protonic states in the reactions of papain and of L-cysteine with 2,2'- and with 4,4'- dipyridyl disulphide: evidence for nucleophilic reactivity in the un-ionized thiol group of the cysteine-25 residue of papain occasioned by its interaction with the histidine-159-asparagine-175 hydrogen-bonded system. Biochem J. 1972 Jun;128(2):471–474. doi: 10.1042/bj1280471. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Brubacher L. J., Bender M. L. The preparation and properties of trans-cinnamoyl-papain. J Am Chem Soc. 1966 Dec 20;88(24):5871–5880. doi: 10.1021/ja00976a032. [DOI] [PubMed] [Google Scholar]
  9. Cleland W. W. Statistical analysis of enzyme kinetic data. Methods Enzymol. 1979;63:103–138. doi: 10.1016/0076-6879(79)63008-2. [DOI] [PubMed] [Google Scholar]
  10. Coll R. J., Compton P. D., Fink A. L. Preparation and properties of covalent compounds and intermediates of serine proteases. Methods Enzymol. 1982;87:66–76. doi: 10.1016/s0076-6879(82)87008-0. [DOI] [PubMed] [Google Scholar]
  11. Compton P. D., Fink A. L. Low-temperature reactions of trypsin with p-nitroanilide substrates: tetrahedral intermediate formation or enzyme isomerization. Biochemistry. 1984 Jun 19;23(13):2989–2994. doi: 10.1021/bi00308a022. [DOI] [PubMed] [Google Scholar]
  12. Compton P., Fink A. L. The detection, accumulation and stabilization of a tetrahedral intermediate in trypsin catalysis. Biochem Biophys Res Commun. 1980 Mar 28;93(2):427–431. doi: 10.1016/0006-291x(80)91095-5. [DOI] [PubMed] [Google Scholar]
  13. ERLANGER B. F., KOKOWSKY N., COHEN W. The preparation and properties of two new chromogenic substrates of trypsin. Arch Biochem Biophys. 1961 Nov;95:271–278. doi: 10.1016/0003-9861(61)90145-x. [DOI] [PubMed] [Google Scholar]
  14. Fersht A. R., Renard M. pH dependence of chymotrypsin catalysis. Appendix: substrate binding to dimeric alpha-chymotrypsin studied by x-ray diffraction and the equilibrium method. Biochemistry. 1974 Mar 26;13(7):1416–1426. doi: 10.1021/bi00704a016. [DOI] [PubMed] [Google Scholar]
  15. Gray C. J., Boukouvalas J., Szawelski R. J., Wharton C. W. Benzyloxycarbonylphenylalanylcitrulline p-nitroanilide as a substrate for papain and other plant cysteine proteinases. Biochem J. 1984 Apr 1;219(1):325–328. doi: 10.1042/bj2190325. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Hunkapiller M. W., Forgac M. D., Richards J. H. Mechanism of action of serine proteases: tetrahedral intermediate and concerted proton transfer. Biochemistry. 1976 Dec 14;15(25):5581–5588. doi: 10.1021/bi00670a024. [DOI] [PubMed] [Google Scholar]
  17. Lowe G., Yuthavong Y. Kinetic specificity in papain-catalysed hydrolyses. Biochem J. 1971 Aug;124(1):107–115. doi: 10.1042/bj1240107. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Malthouse J. P., Brocklehurst K. Preparation of fully active ficin from Ficus glabrata by covalent chromatography and characterization of its active centre by using 2,2'-depyridyl disulphide as a reactivity probe. Biochem J. 1976 Nov;159(2):221–234. doi: 10.1042/bj1590221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Malthouse J. P., Scott A. I. Cryoenzymology of trypsin. A detailed kinetic study of the trypsin-catalysed hydrolysis of N-alpha-benzyloxycarbonyl-L-lysine p-nitrophenyl ester at low temperatures. Biochem J. 1983 Dec 1;215(3):555–563. doi: 10.1042/bj2150555. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Markley J. L., Travers F., Balny C. Lack of evidence for a tetrahedral intermediate in the hydrolysis of nitroanilide substrates by serine proteinases. Subzero-temperature stopped-flow experiments. Eur J Biochem. 1981 Dec;120(3):477–485. doi: 10.1111/j.1432-1033.1981.tb05726.x. [DOI] [PubMed] [Google Scholar]
  21. Petkov D. D. Detection of a tetrahedral intermediate in the trypsin-catalysed hydrolysis of specific ring-activated anilides. Biochim Biophys Acta. 1978 Apr 12;523(2):538–541. doi: 10.1016/0005-2744(78)90057-8. [DOI] [PubMed] [Google Scholar]
  22. Schechter I., Berger A. On the size of the active site in proteases. I. Papain. Biochem Biophys Res Commun. 1967 Apr 20;27(2):157–162. doi: 10.1016/s0006-291x(67)80055-x. [DOI] [PubMed] [Google Scholar]
  23. WILKINSON G. N. Statistical estimations in enzyme kinetics. Biochem J. 1961 Aug;80:324–332. doi: 10.1042/bj0800324. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Yuthavong Y., Suttimool W. Rate constants of individual steps in papain-catalysed reactions. Biochim Biophys Acta. 1978 Mar 14;523(1):198–206. doi: 10.1016/0005-2744(78)90022-0. [DOI] [PubMed] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

RESOURCES