In the title compound, a highly fluorescent boron–dipyrromethene dye, the methylpropionate moieties have different conformations. In the crystal, weak C—H⋯F and C—H⋯O interactions link the molecules.
Keywords: crystal structure; bodipy dye; boron; fluorine,
Abstract
In the title compound, C21H27BF2N2O4, a highly fluorescent boron–dipyrromethene dye, the methylpropionate moieties have different conformations. In the crystal, weak C—H⋯F and C—H⋯O interactions link the molecules. Some optical properties are presented.
Structure description
Fluorescent dyes are of great interest for labeling for analytics in biology and medicine (e.g., Carpenter & Verkman, 2010 ▸; He et al., 2003 ▸; Marfin et al., 2017 ▸; Namkung et al., 2009 ▸). Boron–dipyrromethene dyes (bodipy) show high quantum yields and excellent photostability and 9-aryl-substituted compounds have been the most investigated. The syntheses of these dyes usually consist of the condensation of pyrroles with aldehydes. To synthesize 9H-bodipy dyes, orthoformates have been used but here, dimethylformamide is the source of the central carbon atom in the title compound, C21H27BF2N2O4 (I) (Fig. 1 ▸).
Figure 1.
View of compound I. Displacement ellipsoids are drawn at the 50% probability level.
Despite the high formal symmetry of I, the molecule shows no inherent symmetry in its crystalline form. This is due to the methylpropionate moieties: the C17 branch adopts an all-anti conformation lying to one side of the π-system, while the C11 branch has an s–cis conformation on the other side of the π-system. The dihedral angles of these units with respect to the central fused-ring system are 84.3 (2) (C17 branch) and 74.6 (2)° (C11 branch). The 2,3,4-trisubstitution on the pyrrole rings enlarges the bond angles involving the methyl groups [C6—C5—C25 = 127.7 (4); C6—C7—C26 = 128.3 (4); C2—C1—C23 = 127.9 (4); C2—C3—C24 = 127.9 (4)°]. The near identical B4—N3A [1.537 (6) Å] and B4—N4A [1.535 (6) Å] bond lengths indicate the expected delocalization of charge (compare the chemical scheme).
In the extended structure of I, four molecules fill the unit cell, which are arranged in layers lying parallel to the ac-plane and weak C—H⋯ and C—H⋯O interactions link the molecules ((Fig. 2 ▸), Table 1 ▸). Within the plane a herringbone pattern is formed and a twofold screw axis relates the molecular entities. These crystallographic results confirm recently reported deposited data (Uppal et al., 2020 ▸).
Figure 2.
Partial packing diagram. View along the a axis.
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C16—H16A⋯F9i | 0.98 | 2.37 | 3.324 (7) | 163 |
| C18—H18A⋯O14ii | 0.99 | 2.57 | 3.268 (6) | 128 |
| C23—H23B⋯O20iii | 0.98 | 2.54 | 3.470 (7) | 158 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Synthesis and crystallization
The compound was obtained as a side-product in the condensation of the pyrrole with a formylated cryptand (Jochem et al., 2022 ▸). To the cryptand (97 mg), containing 5% dimethylformamide (4.9 mg, 0.066 mmol) in dry chloroform (10 ml) was added 3,5-dimethyl-4-(methoxycarbonyl)eth-2-ylpyrrole (65.0 mg, 0.359 mmol). Then, 10 µl of trifluoroacetic acid was added and stirred for 26 h. Diiso-propylethylamine (1 ml) was added followed by dichlorodicyanoquinone (54 mg) and stirred for 2 h. Afterwards, BF3 diethyl ether solution (40%, 1 ml) was added dropwise and stirred. After complete addition, the mixture slowly turned red–violet and started fluorescing after about one h. After 20 h and addition of water (MilliQ, 20 ml), the organic phase was separated, washed with water and dried over Na2CO3. Purification via column chromatography (SiO2/CH2Cl2) led to the title compound being eluated first: it crystallized from chloroform/2-propanol as a red solid (12.5 mg) and was recrystallized readily from the mixed solvents of acetonitrile and methanol. HR–ESI–MS: found: 421.2106 [M + H]+, calculated 421.2105 for C21H27BF2N2O4+; 1H NMR (400 MHz, CDCl3) δ = 6.98 (s, 1H), 3.67 (s, 6H), 2.71 (dd, J = 8.6, 6.9 Hz, 4H), 2.50 (s, 6H), 2.44 (dd, J = 8.6, 7.0 Hz, 4H), 2.19 (s, 6H). 13C NMR (101 MHz, CDCl3) δ = 173.25, 155.23, 137.92, 132.64, 128.15, 119.38, 51.86, 34.27, 19.65, 12.80, 9.71. 19F NMR (282 MHz, CDCl3) δ = −146.29 (dd, J = 66.4, 33.2 Hz). Optical properties: the title compound has a high of solubility in a broad range of polar solvents but very limited solubility in toluene and alkanes. Bright sunlight led to photochemical decomposition only in very polar media whereas 10−5M solutions in less polar solvents remained stable. The absorption spectra in CH2Cl2 shows a peak at 527 nm with emission at 536 nm: increasing solvent polarity provokes bathochromic shifts of max. 3 nm.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▸.
Table 2. Experimental details.
| Crystal data | |
| Chemical formula | C21H27BF2N2O4 |
| M r | 420.25 |
| Crystal system, space group | Monoclinic, P21/c |
| Temperature (K) | 120 |
| a, b, c (Å) | 11.9299 (8), 21.6278 (17), 8.2665 (6) |
| β (°) | 108.251 (6) |
| V (Å3) | 2025.6 (3) |
| Z | 4 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.20 × 0.10 × 0.04 |
| Data collection | |
| Diffractometer | Stoe IPDS 2T |
| Absorption correction | Integration (X-RED32; Stoe & Cie, 2020 ▸) |
| Tmin, Tmax | 0.985, 0.995 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 9943, 4863, 2663 |
| R int | 0.052 |
| (sin θ/λ)max (Å−1) | 0.664 |
| Refinement | |
| R[F2 > 2σ(F2)], wR(F2), S | 0.090, 0.238, 1.09 |
| No. of reflections | 4863 |
| No. of parameters | 277 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.50, −0.48 |
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314624008848/hb4485sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314624008848/hb4485Isup2.hkl
CCDC reference: 2263103
Additional supporting information: crystallographic information; 3D view; checkCIF report
full crystallographic data
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Crystal data
| C21H27BF2N2O4 | F(000) = 888 |
| Mr = 420.25 | Dx = 1.378 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 11.9299 (8) Å | Cell parameters from 6884 reflections |
| b = 21.6278 (17) Å | θ = 2.6–28.3° |
| c = 8.2665 (6) Å | µ = 0.11 mm−1 |
| β = 108.251 (6)° | T = 120 K |
| V = 2025.6 (3) Å3 | Plate, red |
| Z = 4 | 0.20 × 0.10 × 0.04 mm |
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Data collection
| Stoe IPDS 2T diffractometer | 4863 independent reflections |
| Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 2663 reflections with I > 2σ(I) |
| Detector resolution: 6.67 pixels mm-1 | Rint = 0.052 |
| rotation method, ω scans | θmax = 28.2°, θmin = 2.6° |
| Absorption correction: integration (XRED32; Stoe & Cie, 2020) | h = −15→15 |
| Tmin = 0.985, Tmax = 0.995 | k = −26→28 |
| 9943 measured reflections | l = −10→10 |
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Refinement
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.090 | H-atom parameters constrained |
| wR(F2) = 0.238 | w = 1/[σ2(Fo2) + (0.0569P)2 + 5.4328P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.09 | (Δ/σ)max < 0.001 |
| 4863 reflections | Δρmax = 0.50 e Å−3 |
| 277 parameters | Δρmin = −0.48 e Å−3 |
| 0 restraints |
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Hydrogen atoms attached to carbon atoms were placed at calculated positions and were refined in the riding-model approximation with C—H = 0.95–0.99 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5 Ueq(methyl C). |
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.6168 (4) | 0.1527 (2) | 0.1730 (5) | 0.0375 (10) | |
| C2 | 0.6242 (4) | 0.0886 (2) | 0.1758 (5) | 0.0401 (10) | |
| N3A | 0.4545 (3) | 0.11329 (17) | 0.2243 (4) | 0.0357 (8) | |
| C3 | 0.5240 (4) | 0.0654 (2) | 0.2098 (5) | 0.0365 (10) | |
| N4A | 0.2907 (3) | 0.17653 (16) | 0.2632 (4) | 0.0320 (8) | |
| B4 | 0.3319 (5) | 0.1102 (2) | 0.2480 (6) | 0.0345 (10) | |
| C5 | 0.1906 (4) | 0.1955 (2) | 0.2927 (5) | 0.0321 (9) | |
| C6 | 0.1870 (4) | 0.2612 (2) | 0.2985 (5) | 0.0339 (9) | |
| C7 | 0.2882 (4) | 0.2830 (2) | 0.2691 (5) | 0.0334 (9) | |
| C7A | 0.3531 (4) | 0.2300 (2) | 0.2478 (5) | 0.0332 (9) | |
| C8 | 0.4593 (4) | 0.2254 (2) | 0.2161 (5) | 0.0378 (10) | |
| H8 | 0.499101 | 0.262106 | 0.202465 | 0.045* | |
| C8A | 0.5107 (4) | 0.1680 (2) | 0.2034 (5) | 0.0344 (9) | |
| F9 | 0.2522 (2) | 0.08108 (12) | 0.1056 (3) | 0.0419 (6) | |
| F10 | 0.3365 (2) | 0.07568 (12) | 0.3926 (3) | 0.0463 (7) | |
| C11 | 0.7237 (4) | 0.0497 (2) | 0.1543 (6) | 0.0447 (11) | |
| H11A | 0.765621 | 0.073310 | 0.088177 | 0.054* | |
| H11B | 0.690710 | 0.011961 | 0.089141 | 0.054* | |
| C12 | 0.8112 (4) | 0.0313 (2) | 0.3255 (6) | 0.0462 (12) | |
| H12A | 0.845614 | 0.069219 | 0.388989 | 0.055* | |
| H12B | 0.768455 | 0.009078 | 0.392899 | 0.055* | |
| C13 | 0.9092 (4) | −0.0090 (2) | 0.3081 (6) | 0.0421 (11) | |
| O14 | 0.9331 (3) | −0.05959 (17) | 0.3704 (5) | 0.0525 (9) | |
| O15 | 0.9673 (3) | 0.01777 (16) | 0.2139 (4) | 0.0482 (8) | |
| C16 | 1.0658 (5) | −0.0171 (3) | 0.1959 (7) | 0.0571 (14) | |
| H16A | 1.112435 | 0.009131 | 0.144368 | 0.086* | |
| H16B | 1.036517 | −0.053078 | 0.122765 | 0.086* | |
| H16C | 1.115511 | −0.031056 | 0.308257 | 0.086* | |
| C17 | 0.0914 (4) | 0.2973 (2) | 0.3389 (5) | 0.0365 (10) | |
| H17A | 0.120908 | 0.339517 | 0.374704 | 0.044* | |
| H17B | 0.074036 | 0.277407 | 0.436257 | 0.044* | |
| C18 | −0.0232 (4) | 0.3022 (2) | 0.1904 (5) | 0.0343 (9) | |
| H18A | −0.009617 | 0.328626 | 0.100521 | 0.041* | |
| H18B | −0.046000 | 0.260563 | 0.141415 | 0.041* | |
| C19 | −0.1220 (4) | 0.3287 (2) | 0.2435 (5) | 0.0372 (10) | |
| O20 | −0.1238 (3) | 0.33229 (16) | 0.3882 (4) | 0.0449 (8) | |
| O21 | −0.2120 (3) | 0.34756 (15) | 0.1088 (4) | 0.0412 (7) | |
| C22 | −0.3121 (4) | 0.3733 (3) | 0.1478 (7) | 0.0512 (13) | |
| H22A | −0.376353 | 0.380654 | 0.041848 | 0.077* | |
| H22B | −0.289255 | 0.412509 | 0.208816 | 0.077* | |
| H22C | −0.338522 | 0.344308 | 0.219404 | 0.077* | |
| C23 | 0.7046 (5) | 0.1981 (2) | 0.1491 (7) | 0.0506 (12) | |
| H23A | 0.663003 | 0.233367 | 0.082459 | 0.076* | |
| H23B | 0.753553 | 0.178161 | 0.088545 | 0.076* | |
| H23C | 0.754893 | 0.212549 | 0.260557 | 0.076* | |
| C24 | 0.4960 (4) | 0.0000 (2) | 0.2359 (6) | 0.0420 (11) | |
| H24A | 0.523288 | −0.026676 | 0.160100 | 0.063* | |
| H24B | 0.410510 | −0.004618 | 0.210398 | 0.063* | |
| H24C | 0.535739 | −0.011763 | 0.354578 | 0.063* | |
| C25 | 0.0994 (4) | 0.1511 (2) | 0.3080 (6) | 0.0399 (10) | |
| H25A | 0.045183 | 0.172126 | 0.357789 | 0.060* | |
| H25B | 0.137629 | 0.116608 | 0.381501 | 0.060* | |
| H25C | 0.055169 | 0.135340 | 0.194887 | 0.060* | |
| C26 | 0.3262 (4) | 0.3483 (2) | 0.2625 (5) | 0.0377 (10) | |
| H26A | 0.339927 | 0.355885 | 0.153316 | 0.057* | |
| H26B | 0.399334 | 0.355734 | 0.355804 | 0.057* | |
| H26C | 0.264443 | 0.376188 | 0.273969 | 0.057* |
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.039 (2) | 0.046 (3) | 0.031 (2) | 0.002 (2) | 0.0166 (19) | −0.0004 (19) |
| C2 | 0.043 (2) | 0.045 (3) | 0.032 (2) | 0.006 (2) | 0.0103 (19) | −0.0036 (19) |
| N3A | 0.040 (2) | 0.037 (2) | 0.0308 (18) | 0.0052 (16) | 0.0126 (16) | 0.0006 (15) |
| C3 | 0.042 (2) | 0.038 (2) | 0.031 (2) | 0.004 (2) | 0.0129 (18) | −0.0005 (18) |
| N4A | 0.0363 (19) | 0.0325 (19) | 0.0314 (18) | 0.0011 (15) | 0.0164 (15) | 0.0021 (14) |
| B4 | 0.042 (3) | 0.038 (3) | 0.025 (2) | 0.003 (2) | 0.013 (2) | 0.0021 (19) |
| C5 | 0.035 (2) | 0.039 (2) | 0.0240 (19) | 0.0021 (18) | 0.0110 (17) | −0.0012 (16) |
| C6 | 0.038 (2) | 0.041 (2) | 0.0244 (19) | 0.0009 (19) | 0.0122 (17) | −0.0015 (17) |
| C7 | 0.038 (2) | 0.037 (2) | 0.025 (2) | 0.0002 (18) | 0.0088 (17) | −0.0012 (16) |
| C7A | 0.039 (2) | 0.036 (2) | 0.025 (2) | 0.0024 (19) | 0.0123 (17) | −0.0001 (17) |
| C8 | 0.042 (2) | 0.041 (3) | 0.033 (2) | 0.004 (2) | 0.0153 (19) | 0.0032 (19) |
| C8A | 0.039 (2) | 0.034 (2) | 0.034 (2) | 0.0003 (19) | 0.0155 (18) | −0.0020 (17) |
| F9 | 0.0437 (14) | 0.0432 (15) | 0.0382 (14) | −0.0020 (12) | 0.0123 (11) | −0.0047 (11) |
| F10 | 0.0596 (17) | 0.0445 (16) | 0.0405 (14) | 0.0089 (13) | 0.0238 (13) | 0.0098 (12) |
| C11 | 0.044 (3) | 0.050 (3) | 0.041 (3) | 0.005 (2) | 0.014 (2) | −0.009 (2) |
| C12 | 0.045 (3) | 0.056 (3) | 0.038 (2) | 0.009 (2) | 0.014 (2) | −0.003 (2) |
| C13 | 0.036 (2) | 0.050 (3) | 0.038 (2) | −0.002 (2) | 0.0085 (19) | 0.002 (2) |
| O14 | 0.053 (2) | 0.049 (2) | 0.053 (2) | 0.0036 (17) | 0.0130 (17) | 0.0062 (17) |
| O15 | 0.0476 (19) | 0.051 (2) | 0.052 (2) | 0.0070 (16) | 0.0231 (16) | 0.0032 (16) |
| C16 | 0.053 (3) | 0.067 (4) | 0.057 (3) | 0.012 (3) | 0.025 (3) | 0.002 (3) |
| C17 | 0.041 (2) | 0.044 (3) | 0.028 (2) | 0.005 (2) | 0.0146 (18) | −0.0009 (18) |
| C18 | 0.037 (2) | 0.040 (2) | 0.027 (2) | 0.0010 (19) | 0.0126 (17) | −0.0018 (17) |
| C19 | 0.043 (2) | 0.039 (2) | 0.033 (2) | −0.001 (2) | 0.0158 (19) | −0.0009 (18) |
| O20 | 0.0460 (18) | 0.058 (2) | 0.0358 (17) | 0.0070 (16) | 0.0203 (14) | 0.0003 (15) |
| O21 | 0.0360 (16) | 0.051 (2) | 0.0364 (16) | 0.0061 (15) | 0.0112 (13) | 0.0013 (14) |
| C22 | 0.037 (2) | 0.066 (3) | 0.054 (3) | 0.011 (2) | 0.019 (2) | 0.004 (3) |
| C23 | 0.050 (3) | 0.053 (3) | 0.055 (3) | −0.003 (2) | 0.025 (2) | −0.003 (2) |
| C24 | 0.047 (3) | 0.040 (3) | 0.039 (2) | 0.004 (2) | 0.012 (2) | −0.001 (2) |
| C25 | 0.042 (2) | 0.048 (3) | 0.036 (2) | 0.000 (2) | 0.019 (2) | 0.0010 (19) |
| C26 | 0.044 (2) | 0.037 (2) | 0.033 (2) | 0.000 (2) | 0.0123 (19) | −0.0003 (18) |
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Geometric parameters (Å, º)
| C1—C2 | 1.389 (6) | C13—O15 | 1.326 (5) |
| C1—C8A | 1.405 (6) | O15—C16 | 1.443 (6) |
| C1—C23 | 1.494 (6) | C16—H16A | 0.9800 |
| C2—C3 | 1.404 (6) | C16—H16B | 0.9800 |
| C2—C11 | 1.510 (6) | C16—H16C | 0.9800 |
| N3A—C3 | 1.356 (5) | C17—C18 | 1.528 (6) |
| N3A—C8A | 1.396 (5) | C17—H17A | 0.9900 |
| N3A—B4 | 1.537 (6) | C17—H17B | 0.9900 |
| C3—C24 | 1.483 (6) | C18—C19 | 1.496 (6) |
| N4A—C5 | 1.355 (5) | C18—H18A | 0.9900 |
| N4A—C7A | 1.403 (5) | C18—H18B | 0.9900 |
| N4A—B4 | 1.535 (6) | C19—O20 | 1.205 (5) |
| B4—F10 | 1.395 (5) | C19—O21 | 1.345 (5) |
| B4—F9 | 1.409 (5) | O21—C22 | 1.442 (5) |
| C5—C6 | 1.424 (6) | C22—H22A | 0.9800 |
| C5—C25 | 1.486 (6) | C22—H22B | 0.9800 |
| C6—C7 | 1.386 (6) | C22—H22C | 0.9800 |
| C6—C17 | 1.504 (6) | C23—H23A | 0.9800 |
| C7—C7A | 1.424 (6) | C23—H23B | 0.9800 |
| C7—C26 | 1.490 (6) | C23—H23C | 0.9800 |
| C7A—C8 | 1.375 (6) | C24—H24A | 0.9800 |
| C8—C8A | 1.403 (6) | C24—H24B | 0.9800 |
| C8—H8 | 0.9500 | C24—H24C | 0.9800 |
| C11—C12 | 1.525 (7) | C25—H25A | 0.9800 |
| C11—H11A | 0.9900 | C25—H25B | 0.9800 |
| C11—H11B | 0.9900 | C25—H25C | 0.9800 |
| C12—C13 | 1.501 (6) | C26—H26A | 0.9800 |
| C12—H12A | 0.9900 | C26—H26B | 0.9800 |
| C12—H12B | 0.9900 | C26—H26C | 0.9800 |
| C13—O14 | 1.205 (6) | ||
| C2—C1—C8A | 106.8 (4) | C13—O15—C16 | 115.1 (4) |
| C2—C1—C23 | 127.9 (4) | O15—C16—H16A | 109.5 |
| C8A—C1—C23 | 125.3 (4) | O15—C16—H16B | 109.5 |
| C1—C2—C3 | 107.8 (4) | H16A—C16—H16B | 109.5 |
| C1—C2—C11 | 127.0 (4) | O15—C16—H16C | 109.5 |
| C3—C2—C11 | 125.1 (4) | H16A—C16—H16C | 109.5 |
| C3—N3A—C8A | 107.8 (3) | H16B—C16—H16C | 109.5 |
| C3—N3A—B4 | 127.6 (4) | C6—C17—C18 | 114.1 (3) |
| C8A—N3A—B4 | 124.4 (4) | C6—C17—H17A | 108.7 |
| N3A—C3—C2 | 109.1 (4) | C18—C17—H17A | 108.7 |
| N3A—C3—C24 | 122.9 (4) | C6—C17—H17B | 108.7 |
| C2—C3—C24 | 127.9 (4) | C18—C17—H17B | 108.7 |
| C5—N4A—C7A | 106.8 (3) | H17A—C17—H17B | 107.6 |
| C5—N4A—B4 | 128.4 (4) | C19—C18—C17 | 112.3 (3) |
| C7A—N4A—B4 | 124.8 (3) | C19—C18—H18A | 109.1 |
| F10—B4—F9 | 108.2 (4) | C17—C18—H18A | 109.1 |
| F10—B4—N4A | 111.0 (3) | C19—C18—H18B | 109.1 |
| F9—B4—N4A | 109.7 (4) | C17—C18—H18B | 109.1 |
| F10—B4—N3A | 110.4 (4) | H18A—C18—H18B | 107.9 |
| F9—B4—N3A | 109.4 (3) | O20—C19—O21 | 123.0 (4) |
| N4A—B4—N3A | 108.2 (4) | O20—C19—C18 | 125.2 (4) |
| N4A—C5—C6 | 110.2 (4) | O21—C19—C18 | 111.8 (3) |
| N4A—C5—C25 | 122.0 (4) | C19—O21—C22 | 115.7 (3) |
| C6—C5—C25 | 127.7 (4) | O21—C22—H22A | 109.5 |
| C7—C6—C5 | 107.2 (4) | O21—C22—H22B | 109.5 |
| C7—C6—C17 | 128.7 (4) | H22A—C22—H22B | 109.5 |
| C5—C6—C17 | 123.9 (4) | O21—C22—H22C | 109.5 |
| C6—C7—C7A | 106.6 (4) | H22A—C22—H22C | 109.5 |
| C6—C7—C26 | 128.3 (4) | H22B—C22—H22C | 109.5 |
| C7A—C7—C26 | 125.0 (4) | C1—C23—H23A | 109.5 |
| C8—C7A—N4A | 120.2 (4) | C1—C23—H23B | 109.5 |
| C8—C7A—C7 | 130.7 (4) | H23A—C23—H23B | 109.5 |
| N4A—C7A—C7 | 109.1 (3) | C1—C23—H23C | 109.5 |
| C7A—C8—C8A | 121.9 (4) | H23A—C23—H23C | 109.5 |
| C7A—C8—H8 | 119.0 | H23B—C23—H23C | 109.5 |
| C8A—C8—H8 | 119.0 | C3—C24—H24A | 109.5 |
| N3A—C8A—C8 | 120.2 (4) | C3—C24—H24B | 109.5 |
| N3A—C8A—C1 | 108.5 (4) | H24A—C24—H24B | 109.5 |
| C8—C8A—C1 | 131.3 (4) | C3—C24—H24C | 109.5 |
| C2—C11—C12 | 111.8 (4) | H24A—C24—H24C | 109.5 |
| C2—C11—H11A | 109.3 | H24B—C24—H24C | 109.5 |
| C12—C11—H11A | 109.3 | C5—C25—H25A | 109.5 |
| C2—C11—H11B | 109.3 | C5—C25—H25B | 109.5 |
| C12—C11—H11B | 109.3 | H25A—C25—H25B | 109.5 |
| H11A—C11—H11B | 107.9 | C5—C25—H25C | 109.5 |
| C13—C12—C11 | 112.9 (4) | H25A—C25—H25C | 109.5 |
| C13—C12—H12A | 109.0 | H25B—C25—H25C | 109.5 |
| C11—C12—H12A | 109.0 | C7—C26—H26A | 109.5 |
| C13—C12—H12B | 109.0 | C7—C26—H26B | 109.5 |
| C11—C12—H12B | 109.0 | H26A—C26—H26B | 109.5 |
| H12A—C12—H12B | 107.8 | C7—C26—H26C | 109.5 |
| O14—C13—O15 | 123.4 (4) | H26A—C26—H26C | 109.5 |
| O14—C13—C12 | 125.0 (4) | H26B—C26—H26C | 109.5 |
| O15—C13—C12 | 111.6 (4) | ||
| C8A—C1—C2—C3 | −0.8 (5) | C17—C6—C7—C26 | −2.9 (7) |
| C23—C1—C2—C3 | 177.2 (4) | C5—N4A—C7A—C8 | −179.6 (4) |
| C8A—C1—C2—C11 | −178.2 (4) | B4—N4A—C7A—C8 | 0.2 (6) |
| C23—C1—C2—C11 | −0.2 (8) | C5—N4A—C7A—C7 | 0.1 (4) |
| C8A—N3A—C3—C2 | −1.3 (5) | B4—N4A—C7A—C7 | 180.0 (4) |
| B4—N3A—C3—C2 | 175.1 (4) | C6—C7—C7A—C8 | −179.9 (4) |
| C8A—N3A—C3—C24 | 176.0 (4) | C26—C7—C7A—C8 | −0.7 (7) |
| B4—N3A—C3—C24 | −7.6 (7) | C6—C7—C7A—N4A | 0.4 (4) |
| C1—C2—C3—N3A | 1.3 (5) | C26—C7—C7A—N4A | 179.6 (4) |
| C11—C2—C3—N3A | 178.8 (4) | N4A—C7A—C8—C8A | −2.0 (6) |
| C1—C2—C3—C24 | −175.8 (4) | C7—C7A—C8—C8A | 178.3 (4) |
| C11—C2—C3—C24 | 1.7 (7) | C3—N3A—C8A—C8 | −178.6 (4) |
| C5—N4A—B4—F10 | −55.6 (6) | B4—N3A—C8A—C8 | 4.9 (6) |
| C7A—N4A—B4—F10 | 124.6 (4) | C3—N3A—C8A—C1 | 0.8 (5) |
| C5—N4A—B4—F9 | 63.9 (5) | B4—N3A—C8A—C1 | −175.8 (4) |
| C7A—N4A—B4—F9 | −116.0 (4) | C7A—C8—C8A—N3A | −0.5 (6) |
| C5—N4A—B4—N3A | −176.9 (4) | C7A—C8—C8A—C1 | −179.7 (4) |
| C7A—N4A—B4—N3A | 3.3 (5) | C2—C1—C8A—N3A | 0.0 (5) |
| C3—N3A—B4—F10 | 56.7 (6) | C23—C1—C8A—N3A | −178.1 (4) |
| C8A—N3A—B4—F10 | −127.4 (4) | C2—C1—C8A—C8 | 179.3 (5) |
| C3—N3A—B4—F9 | −62.3 (5) | C23—C1—C8A—C8 | 1.2 (8) |
| C8A—N3A—B4—F9 | 113.6 (4) | C1—C2—C11—C12 | 95.7 (6) |
| C3—N3A—B4—N4A | 178.3 (4) | C3—C2—C11—C12 | −81.3 (6) |
| C8A—N3A—B4—N4A | −5.8 (5) | C2—C11—C12—C13 | 178.2 (4) |
| C7A—N4A—C5—C6 | −0.6 (5) | C11—C12—C13—O14 | −123.1 (5) |
| B4—N4A—C5—C6 | 179.6 (4) | C11—C12—C13—O15 | 56.6 (6) |
| C7A—N4A—C5—C25 | 177.1 (4) | O14—C13—O15—C16 | −2.4 (7) |
| B4—N4A—C5—C25 | −2.8 (6) | C12—C13—O15—C16 | 177.9 (4) |
| N4A—C5—C6—C7 | 0.8 (5) | C7—C6—C17—C18 | 105.4 (5) |
| C25—C5—C6—C7 | −176.6 (4) | C5—C6—C17—C18 | −78.1 (5) |
| N4A—C5—C6—C17 | −176.4 (3) | C6—C17—C18—C19 | 170.2 (4) |
| C25—C5—C6—C17 | 6.2 (7) | C17—C18—C19—O20 | −17.2 (6) |
| C5—C6—C7—C7A | −0.7 (5) | C17—C18—C19—O21 | 164.1 (4) |
| C17—C6—C7—C7A | 176.3 (4) | O20—C19—O21—C22 | 0.7 (7) |
| C5—C6—C7—C26 | −179.8 (4) | C18—C19—O21—C22 | 179.4 (4) |
Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C16—H16A···F9i | 0.98 | 2.37 | 3.324 (7) | 163 |
| C18—H18A···O14ii | 0.99 | 2.57 | 3.268 (6) | 128 |
| C23—H23B···O20iii | 0.98 | 2.54 | 3.470 (7) | 158 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y+1/2, −z+1/2; (iii) x+1, −y+1/2, z−1/2.
References
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- Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314624008848/hb4485sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314624008848/hb4485Isup2.hkl
CCDC reference: 2263103
Additional supporting information: crystallographic information; 3D view; checkCIF report


