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. 2024 Sep 17;9(Pt 9):x240884. doi: 10.1107/S2414314624008848

Redetermined structure of methyl 3-{4,4-di­fluoro-2-[2-(methoxy­car­bon­yl)­ethyl]-1,3,5,7-tetra­methyl-4-bora-3a,4a-di­aza-s-in­da­cen-6-yl}pro­pion­ate

Dieter Schollmeyer a, Matthias Jochen a, Heiner Detert a,*
Editor: W T A Harrisonb
PMCID: PMC11451027  PMID: 39371665

In the title compound, a highly fluorescent boron–dipyrromethene dye, the methyl­propionate moieties have different conformations. In the crystal, weak C—H⋯F and C—H⋯O inter­actions link the mol­ecules.

Keywords: crystal structure; bodipy dye; boron; fluorine,

Abstract

In the title compound, C21H27BF2N2O4, a highly fluorescent boron–dipyrromethene dye, the methyl­propionate moieties have different conformations. In the crystal, weak C—H⋯F and C—H⋯O inter­actions link the mol­ecules. Some optical properties are presented.graphic file with name x-09-x240884-scheme1-3D1.jpg

Structure description

Fluorescent dyes are of great inter­est for labeling for analytics in biology and medicine (e.g., Carpenter & Verkman, 2010; He et al., 2003; Marfin et al., 2017; Namkung et al., 2009). Boron–dipyrromethene dyes (bodipy) show high quantum yields and excellent photostability and 9-aryl-substituted compounds have been the most investigated. The syntheses of these dyes usually consist of the condensation of pyrroles with aldehydes. To synthesize 9H-bodipy dyes, orthoformates have been used but here, di­methyl­formamide is the source of the central carbon atom in the title compound, C21H27BF2N2O4 (I) (Fig. 1).

Figure 1.

Figure 1

View of compound I. Displacement ellipsoids are drawn at the 50% probability level.

Despite the high formal symmetry of I, the mol­ecule shows no inherent symmetry in its crystalline form. This is due to the methyl­propionate moieties: the C17 branch adopts an all-anti conformation lying to one side of the π-system, while the C11 branch has an s–cis conformation on the other side of the π-system. The dihedral angles of these units with respect to the central fused-ring system are 84.3 (2) (C17 branch) and 74.6 (2)° (C11 branch). The 2,3,4-tris­ubstitution on the pyrrole rings enlarges the bond angles involving the methyl groups [C6—C5—C25 = 127.7 (4); C6—C7—C26 = 128.3 (4); C2—C1—C23 = 127.9 (4); C2—C3—C24 = 127.9 (4)°]. The near identical B4—N3A [1.537 (6) Å] and B4—N4A [1.535 (6) Å] bond lengths indicate the expected delocalization of charge (compare the chemical scheme).

In the extended structure of I, four mol­ecules fill the unit cell, which are arranged in layers lying parallel to the ac-plane and weak C—H⋯ and C—H⋯O inter­actions link the mol­ecules ((Fig. 2), Table 1). Within the plane a herringbone pattern is formed and a twofold screw axis relates the mol­ecular entities. These crystallographic results confirm recently reported deposited data (Uppal et al., 2020).

Figure 2.

Figure 2

Partial packing diagram. View along the a axis.

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C16—H16A⋯F9i 0.98 2.37 3.324 (7) 163
C18—H18A⋯O14ii 0.99 2.57 3.268 (6) 128
C23—H23B⋯O20iii 0.98 2.54 3.470 (7) 158

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Synthesis and crystallization

The compound was obtained as a side-product in the condensation of the pyrrole with a formyl­ated cryptand (Jochem et al., 2022). To the cryptand (97 mg), containing 5% di­methyl­formamide (4.9 mg, 0.066 mmol) in dry chloro­form (10 ml) was added 3,5-dimethyl-4-(meth­oxy­carbon­yl)eth-2-yl­pyrrole (65.0 mg, 0.359 mmol). Then, 10 µl of tri­fluoro­acetic acid was added and stirred for 26 h. Diiso-propyl­ethyl­amine (1 ml) was added followed by di­chloro­dicyano­quinone (54 mg) and stirred for 2 h. Afterwards, BF3 diethyl ether solution (40%, 1 ml) was added dropwise and stirred. After complete addition, the mixture slowly turned red–violet and started fluorescing after about one h. After 20 h and addition of water (MilliQ, 20 ml), the organic phase was separated, washed with water and dried over Na2CO3. Purification via column chromatography (SiO2/CH2Cl2) led to the title compound being eluated first: it crystallized from chloro­form/2-propanol as a red solid (12.5 mg) and was recrystallized readily from the mixed solvents of aceto­nitrile and methanol. HR–ESI–MS: found: 421.2106 [M + H]+, calculated 421.2105 for C21H27BF2N2O4+; 1H NMR (400 MHz, CDCl3) δ = 6.98 (s, 1H), 3.67 (s, 6H), 2.71 (dd, J = 8.6, 6.9 Hz, 4H), 2.50 (s, 6H), 2.44 (dd, J = 8.6, 7.0 Hz, 4H), 2.19 (s, 6H). 13C NMR (101 MHz, CDCl3) δ = 173.25, 155.23, 137.92, 132.64, 128.15, 119.38, 51.86, 34.27, 19.65, 12.80, 9.71. 19F NMR (282 MHz, CDCl3) δ = −146.29 (dd, J = 66.4, 33.2 Hz). Optical properties: the title compound has a high of solubility in a broad range of polar solvents but very limited solubility in toluene and alkanes. Bright sunlight led to photochemical decomposition only in very polar media whereas 10−5M solutions in less polar solvents remained stable. The absorption spectra in CH2Cl2 shows a peak at 527 nm with emission at 536 nm: increasing solvent polarity provokes bathochromic shifts of max. 3 nm.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2.

Table 2. Experimental details.

Crystal data
Chemical formula C21H27BF2N2O4
M r 420.25
Crystal system, space group Monoclinic, P21/c
Temperature (K) 120
a, b, c (Å) 11.9299 (8), 21.6278 (17), 8.2665 (6)
β (°) 108.251 (6)
V3) 2025.6 (3)
Z 4
Radiation type Mo Kα
μ (mm−1) 0.11
Crystal size (mm) 0.20 × 0.10 × 0.04
 
Data collection
Diffractometer Stoe IPDS 2T
Absorption correction Integration (X-RED32; Stoe & Cie, 2020)
Tmin, Tmax 0.985, 0.995
No. of measured, independent and observed [I > 2σ(I)] reflections 9943, 4863, 2663
R int 0.052
(sin θ/λ)max−1) 0.664
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.090, 0.238, 1.09
No. of reflections 4863
No. of parameters 277
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.50, −0.48

Computer programs: X-AREA WinXpose, Recipe and Integrate (Stoe & Cie, 2020), SHELXT2014 (Shelxdrick, 2015a), SHELXL2018/3 (Sheldrick, 2015b) and PLATON (Spek, 2020).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314624008848/hb4485sup1.cif

x-09-x240884-sup1.cif (357.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314624008848/hb4485Isup2.hkl

x-09-x240884-Isup2.hkl (387.2KB, hkl)

CCDC reference: 2263103

Additional supporting information: crystallographic information; 3D view; checkCIF report

full crystallographic data

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Crystal data

C21H27BF2N2O4 F(000) = 888
Mr = 420.25 Dx = 1.378 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
a = 11.9299 (8) Å Cell parameters from 6884 reflections
b = 21.6278 (17) Å θ = 2.6–28.3°
c = 8.2665 (6) Å µ = 0.11 mm1
β = 108.251 (6)° T = 120 K
V = 2025.6 (3) Å3 Plate, red
Z = 4 0.20 × 0.10 × 0.04 mm

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Data collection

Stoe IPDS 2T diffractometer 4863 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus 2663 reflections with I > 2σ(I)
Detector resolution: 6.67 pixels mm-1 Rint = 0.052
rotation method, ω scans θmax = 28.2°, θmin = 2.6°
Absorption correction: integration (XRED32; Stoe & Cie, 2020) h = −15→15
Tmin = 0.985, Tmax = 0.995 k = −26→28
9943 measured reflections l = −10→10

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Refinement

Refinement on F2 Primary atom site location: dual
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.090 H-atom parameters constrained
wR(F2) = 0.238 w = 1/[σ2(Fo2) + (0.0569P)2 + 5.4328P] where P = (Fo2 + 2Fc2)/3
S = 1.09 (Δ/σ)max < 0.001
4863 reflections Δρmax = 0.50 e Å3
277 parameters Δρmin = −0.48 e Å3
0 restraints

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Hydrogen atoms attached to carbon atoms were placed at calculated positions and were refined in the riding-model approximation with C—H = 0.95–0.99 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5 Ueq(methyl C).

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.6168 (4) 0.1527 (2) 0.1730 (5) 0.0375 (10)
C2 0.6242 (4) 0.0886 (2) 0.1758 (5) 0.0401 (10)
N3A 0.4545 (3) 0.11329 (17) 0.2243 (4) 0.0357 (8)
C3 0.5240 (4) 0.0654 (2) 0.2098 (5) 0.0365 (10)
N4A 0.2907 (3) 0.17653 (16) 0.2632 (4) 0.0320 (8)
B4 0.3319 (5) 0.1102 (2) 0.2480 (6) 0.0345 (10)
C5 0.1906 (4) 0.1955 (2) 0.2927 (5) 0.0321 (9)
C6 0.1870 (4) 0.2612 (2) 0.2985 (5) 0.0339 (9)
C7 0.2882 (4) 0.2830 (2) 0.2691 (5) 0.0334 (9)
C7A 0.3531 (4) 0.2300 (2) 0.2478 (5) 0.0332 (9)
C8 0.4593 (4) 0.2254 (2) 0.2161 (5) 0.0378 (10)
H8 0.499101 0.262106 0.202465 0.045*
C8A 0.5107 (4) 0.1680 (2) 0.2034 (5) 0.0344 (9)
F9 0.2522 (2) 0.08108 (12) 0.1056 (3) 0.0419 (6)
F10 0.3365 (2) 0.07568 (12) 0.3926 (3) 0.0463 (7)
C11 0.7237 (4) 0.0497 (2) 0.1543 (6) 0.0447 (11)
H11A 0.765621 0.073310 0.088177 0.054*
H11B 0.690710 0.011961 0.089141 0.054*
C12 0.8112 (4) 0.0313 (2) 0.3255 (6) 0.0462 (12)
H12A 0.845614 0.069219 0.388989 0.055*
H12B 0.768455 0.009078 0.392899 0.055*
C13 0.9092 (4) −0.0090 (2) 0.3081 (6) 0.0421 (11)
O14 0.9331 (3) −0.05959 (17) 0.3704 (5) 0.0525 (9)
O15 0.9673 (3) 0.01777 (16) 0.2139 (4) 0.0482 (8)
C16 1.0658 (5) −0.0171 (3) 0.1959 (7) 0.0571 (14)
H16A 1.112435 0.009131 0.144368 0.086*
H16B 1.036517 −0.053078 0.122765 0.086*
H16C 1.115511 −0.031056 0.308257 0.086*
C17 0.0914 (4) 0.2973 (2) 0.3389 (5) 0.0365 (10)
H17A 0.120908 0.339517 0.374704 0.044*
H17B 0.074036 0.277407 0.436257 0.044*
C18 −0.0232 (4) 0.3022 (2) 0.1904 (5) 0.0343 (9)
H18A −0.009617 0.328626 0.100521 0.041*
H18B −0.046000 0.260563 0.141415 0.041*
C19 −0.1220 (4) 0.3287 (2) 0.2435 (5) 0.0372 (10)
O20 −0.1238 (3) 0.33229 (16) 0.3882 (4) 0.0449 (8)
O21 −0.2120 (3) 0.34756 (15) 0.1088 (4) 0.0412 (7)
C22 −0.3121 (4) 0.3733 (3) 0.1478 (7) 0.0512 (13)
H22A −0.376353 0.380654 0.041848 0.077*
H22B −0.289255 0.412509 0.208816 0.077*
H22C −0.338522 0.344308 0.219404 0.077*
C23 0.7046 (5) 0.1981 (2) 0.1491 (7) 0.0506 (12)
H23A 0.663003 0.233367 0.082459 0.076*
H23B 0.753553 0.178161 0.088545 0.076*
H23C 0.754893 0.212549 0.260557 0.076*
C24 0.4960 (4) 0.0000 (2) 0.2359 (6) 0.0420 (11)
H24A 0.523288 −0.026676 0.160100 0.063*
H24B 0.410510 −0.004618 0.210398 0.063*
H24C 0.535739 −0.011763 0.354578 0.063*
C25 0.0994 (4) 0.1511 (2) 0.3080 (6) 0.0399 (10)
H25A 0.045183 0.172126 0.357789 0.060*
H25B 0.137629 0.116608 0.381501 0.060*
H25C 0.055169 0.135340 0.194887 0.060*
C26 0.3262 (4) 0.3483 (2) 0.2625 (5) 0.0377 (10)
H26A 0.339927 0.355885 0.153316 0.057*
H26B 0.399334 0.355734 0.355804 0.057*
H26C 0.264443 0.376188 0.273969 0.057*

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.039 (2) 0.046 (3) 0.031 (2) 0.002 (2) 0.0166 (19) −0.0004 (19)
C2 0.043 (2) 0.045 (3) 0.032 (2) 0.006 (2) 0.0103 (19) −0.0036 (19)
N3A 0.040 (2) 0.037 (2) 0.0308 (18) 0.0052 (16) 0.0126 (16) 0.0006 (15)
C3 0.042 (2) 0.038 (2) 0.031 (2) 0.004 (2) 0.0129 (18) −0.0005 (18)
N4A 0.0363 (19) 0.0325 (19) 0.0314 (18) 0.0011 (15) 0.0164 (15) 0.0021 (14)
B4 0.042 (3) 0.038 (3) 0.025 (2) 0.003 (2) 0.013 (2) 0.0021 (19)
C5 0.035 (2) 0.039 (2) 0.0240 (19) 0.0021 (18) 0.0110 (17) −0.0012 (16)
C6 0.038 (2) 0.041 (2) 0.0244 (19) 0.0009 (19) 0.0122 (17) −0.0015 (17)
C7 0.038 (2) 0.037 (2) 0.025 (2) 0.0002 (18) 0.0088 (17) −0.0012 (16)
C7A 0.039 (2) 0.036 (2) 0.025 (2) 0.0024 (19) 0.0123 (17) −0.0001 (17)
C8 0.042 (2) 0.041 (3) 0.033 (2) 0.004 (2) 0.0153 (19) 0.0032 (19)
C8A 0.039 (2) 0.034 (2) 0.034 (2) 0.0003 (19) 0.0155 (18) −0.0020 (17)
F9 0.0437 (14) 0.0432 (15) 0.0382 (14) −0.0020 (12) 0.0123 (11) −0.0047 (11)
F10 0.0596 (17) 0.0445 (16) 0.0405 (14) 0.0089 (13) 0.0238 (13) 0.0098 (12)
C11 0.044 (3) 0.050 (3) 0.041 (3) 0.005 (2) 0.014 (2) −0.009 (2)
C12 0.045 (3) 0.056 (3) 0.038 (2) 0.009 (2) 0.014 (2) −0.003 (2)
C13 0.036 (2) 0.050 (3) 0.038 (2) −0.002 (2) 0.0085 (19) 0.002 (2)
O14 0.053 (2) 0.049 (2) 0.053 (2) 0.0036 (17) 0.0130 (17) 0.0062 (17)
O15 0.0476 (19) 0.051 (2) 0.052 (2) 0.0070 (16) 0.0231 (16) 0.0032 (16)
C16 0.053 (3) 0.067 (4) 0.057 (3) 0.012 (3) 0.025 (3) 0.002 (3)
C17 0.041 (2) 0.044 (3) 0.028 (2) 0.005 (2) 0.0146 (18) −0.0009 (18)
C18 0.037 (2) 0.040 (2) 0.027 (2) 0.0010 (19) 0.0126 (17) −0.0018 (17)
C19 0.043 (2) 0.039 (2) 0.033 (2) −0.001 (2) 0.0158 (19) −0.0009 (18)
O20 0.0460 (18) 0.058 (2) 0.0358 (17) 0.0070 (16) 0.0203 (14) 0.0003 (15)
O21 0.0360 (16) 0.051 (2) 0.0364 (16) 0.0061 (15) 0.0112 (13) 0.0013 (14)
C22 0.037 (2) 0.066 (3) 0.054 (3) 0.011 (2) 0.019 (2) 0.004 (3)
C23 0.050 (3) 0.053 (3) 0.055 (3) −0.003 (2) 0.025 (2) −0.003 (2)
C24 0.047 (3) 0.040 (3) 0.039 (2) 0.004 (2) 0.012 (2) −0.001 (2)
C25 0.042 (2) 0.048 (3) 0.036 (2) 0.000 (2) 0.019 (2) 0.0010 (19)
C26 0.044 (2) 0.037 (2) 0.033 (2) 0.000 (2) 0.0123 (19) −0.0003 (18)

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Geometric parameters (Å, º)

C1—C2 1.389 (6) C13—O15 1.326 (5)
C1—C8A 1.405 (6) O15—C16 1.443 (6)
C1—C23 1.494 (6) C16—H16A 0.9800
C2—C3 1.404 (6) C16—H16B 0.9800
C2—C11 1.510 (6) C16—H16C 0.9800
N3A—C3 1.356 (5) C17—C18 1.528 (6)
N3A—C8A 1.396 (5) C17—H17A 0.9900
N3A—B4 1.537 (6) C17—H17B 0.9900
C3—C24 1.483 (6) C18—C19 1.496 (6)
N4A—C5 1.355 (5) C18—H18A 0.9900
N4A—C7A 1.403 (5) C18—H18B 0.9900
N4A—B4 1.535 (6) C19—O20 1.205 (5)
B4—F10 1.395 (5) C19—O21 1.345 (5)
B4—F9 1.409 (5) O21—C22 1.442 (5)
C5—C6 1.424 (6) C22—H22A 0.9800
C5—C25 1.486 (6) C22—H22B 0.9800
C6—C7 1.386 (6) C22—H22C 0.9800
C6—C17 1.504 (6) C23—H23A 0.9800
C7—C7A 1.424 (6) C23—H23B 0.9800
C7—C26 1.490 (6) C23—H23C 0.9800
C7A—C8 1.375 (6) C24—H24A 0.9800
C8—C8A 1.403 (6) C24—H24B 0.9800
C8—H8 0.9500 C24—H24C 0.9800
C11—C12 1.525 (7) C25—H25A 0.9800
C11—H11A 0.9900 C25—H25B 0.9800
C11—H11B 0.9900 C25—H25C 0.9800
C12—C13 1.501 (6) C26—H26A 0.9800
C12—H12A 0.9900 C26—H26B 0.9800
C12—H12B 0.9900 C26—H26C 0.9800
C13—O14 1.205 (6)
C2—C1—C8A 106.8 (4) C13—O15—C16 115.1 (4)
C2—C1—C23 127.9 (4) O15—C16—H16A 109.5
C8A—C1—C23 125.3 (4) O15—C16—H16B 109.5
C1—C2—C3 107.8 (4) H16A—C16—H16B 109.5
C1—C2—C11 127.0 (4) O15—C16—H16C 109.5
C3—C2—C11 125.1 (4) H16A—C16—H16C 109.5
C3—N3A—C8A 107.8 (3) H16B—C16—H16C 109.5
C3—N3A—B4 127.6 (4) C6—C17—C18 114.1 (3)
C8A—N3A—B4 124.4 (4) C6—C17—H17A 108.7
N3A—C3—C2 109.1 (4) C18—C17—H17A 108.7
N3A—C3—C24 122.9 (4) C6—C17—H17B 108.7
C2—C3—C24 127.9 (4) C18—C17—H17B 108.7
C5—N4A—C7A 106.8 (3) H17A—C17—H17B 107.6
C5—N4A—B4 128.4 (4) C19—C18—C17 112.3 (3)
C7A—N4A—B4 124.8 (3) C19—C18—H18A 109.1
F10—B4—F9 108.2 (4) C17—C18—H18A 109.1
F10—B4—N4A 111.0 (3) C19—C18—H18B 109.1
F9—B4—N4A 109.7 (4) C17—C18—H18B 109.1
F10—B4—N3A 110.4 (4) H18A—C18—H18B 107.9
F9—B4—N3A 109.4 (3) O20—C19—O21 123.0 (4)
N4A—B4—N3A 108.2 (4) O20—C19—C18 125.2 (4)
N4A—C5—C6 110.2 (4) O21—C19—C18 111.8 (3)
N4A—C5—C25 122.0 (4) C19—O21—C22 115.7 (3)
C6—C5—C25 127.7 (4) O21—C22—H22A 109.5
C7—C6—C5 107.2 (4) O21—C22—H22B 109.5
C7—C6—C17 128.7 (4) H22A—C22—H22B 109.5
C5—C6—C17 123.9 (4) O21—C22—H22C 109.5
C6—C7—C7A 106.6 (4) H22A—C22—H22C 109.5
C6—C7—C26 128.3 (4) H22B—C22—H22C 109.5
C7A—C7—C26 125.0 (4) C1—C23—H23A 109.5
C8—C7A—N4A 120.2 (4) C1—C23—H23B 109.5
C8—C7A—C7 130.7 (4) H23A—C23—H23B 109.5
N4A—C7A—C7 109.1 (3) C1—C23—H23C 109.5
C7A—C8—C8A 121.9 (4) H23A—C23—H23C 109.5
C7A—C8—H8 119.0 H23B—C23—H23C 109.5
C8A—C8—H8 119.0 C3—C24—H24A 109.5
N3A—C8A—C8 120.2 (4) C3—C24—H24B 109.5
N3A—C8A—C1 108.5 (4) H24A—C24—H24B 109.5
C8—C8A—C1 131.3 (4) C3—C24—H24C 109.5
C2—C11—C12 111.8 (4) H24A—C24—H24C 109.5
C2—C11—H11A 109.3 H24B—C24—H24C 109.5
C12—C11—H11A 109.3 C5—C25—H25A 109.5
C2—C11—H11B 109.3 C5—C25—H25B 109.5
C12—C11—H11B 109.3 H25A—C25—H25B 109.5
H11A—C11—H11B 107.9 C5—C25—H25C 109.5
C13—C12—C11 112.9 (4) H25A—C25—H25C 109.5
C13—C12—H12A 109.0 H25B—C25—H25C 109.5
C11—C12—H12A 109.0 C7—C26—H26A 109.5
C13—C12—H12B 109.0 C7—C26—H26B 109.5
C11—C12—H12B 109.0 H26A—C26—H26B 109.5
H12A—C12—H12B 107.8 C7—C26—H26C 109.5
O14—C13—O15 123.4 (4) H26A—C26—H26C 109.5
O14—C13—C12 125.0 (4) H26B—C26—H26C 109.5
O15—C13—C12 111.6 (4)
C8A—C1—C2—C3 −0.8 (5) C17—C6—C7—C26 −2.9 (7)
C23—C1—C2—C3 177.2 (4) C5—N4A—C7A—C8 −179.6 (4)
C8A—C1—C2—C11 −178.2 (4) B4—N4A—C7A—C8 0.2 (6)
C23—C1—C2—C11 −0.2 (8) C5—N4A—C7A—C7 0.1 (4)
C8A—N3A—C3—C2 −1.3 (5) B4—N4A—C7A—C7 180.0 (4)
B4—N3A—C3—C2 175.1 (4) C6—C7—C7A—C8 −179.9 (4)
C8A—N3A—C3—C24 176.0 (4) C26—C7—C7A—C8 −0.7 (7)
B4—N3A—C3—C24 −7.6 (7) C6—C7—C7A—N4A 0.4 (4)
C1—C2—C3—N3A 1.3 (5) C26—C7—C7A—N4A 179.6 (4)
C11—C2—C3—N3A 178.8 (4) N4A—C7A—C8—C8A −2.0 (6)
C1—C2—C3—C24 −175.8 (4) C7—C7A—C8—C8A 178.3 (4)
C11—C2—C3—C24 1.7 (7) C3—N3A—C8A—C8 −178.6 (4)
C5—N4A—B4—F10 −55.6 (6) B4—N3A—C8A—C8 4.9 (6)
C7A—N4A—B4—F10 124.6 (4) C3—N3A—C8A—C1 0.8 (5)
C5—N4A—B4—F9 63.9 (5) B4—N3A—C8A—C1 −175.8 (4)
C7A—N4A—B4—F9 −116.0 (4) C7A—C8—C8A—N3A −0.5 (6)
C5—N4A—B4—N3A −176.9 (4) C7A—C8—C8A—C1 −179.7 (4)
C7A—N4A—B4—N3A 3.3 (5) C2—C1—C8A—N3A 0.0 (5)
C3—N3A—B4—F10 56.7 (6) C23—C1—C8A—N3A −178.1 (4)
C8A—N3A—B4—F10 −127.4 (4) C2—C1—C8A—C8 179.3 (5)
C3—N3A—B4—F9 −62.3 (5) C23—C1—C8A—C8 1.2 (8)
C8A—N3A—B4—F9 113.6 (4) C1—C2—C11—C12 95.7 (6)
C3—N3A—B4—N4A 178.3 (4) C3—C2—C11—C12 −81.3 (6)
C8A—N3A—B4—N4A −5.8 (5) C2—C11—C12—C13 178.2 (4)
C7A—N4A—C5—C6 −0.6 (5) C11—C12—C13—O14 −123.1 (5)
B4—N4A—C5—C6 179.6 (4) C11—C12—C13—O15 56.6 (6)
C7A—N4A—C5—C25 177.1 (4) O14—C13—O15—C16 −2.4 (7)
B4—N4A—C5—C25 −2.8 (6) C12—C13—O15—C16 177.9 (4)
N4A—C5—C6—C7 0.8 (5) C7—C6—C17—C18 105.4 (5)
C25—C5—C6—C7 −176.6 (4) C5—C6—C17—C18 −78.1 (5)
N4A—C5—C6—C17 −176.4 (3) C6—C17—C18—C19 170.2 (4)
C25—C5—C6—C17 6.2 (7) C17—C18—C19—O20 −17.2 (6)
C5—C6—C7—C7A −0.7 (5) C17—C18—C19—O21 164.1 (4)
C17—C6—C7—C7A 176.3 (4) O20—C19—O21—C22 0.7 (7)
C5—C6—C7—C26 −179.8 (4) C18—C19—O21—C22 179.4 (4)

Methyl 3-{4,4-difluoro-2-[2-(methoxycarbonyl)ethyl]-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacen-6-yl}propionate . Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C16—H16A···F9i 0.98 2.37 3.324 (7) 163
C18—H18A···O14ii 0.99 2.57 3.268 (6) 128
C23—H23B···O20iii 0.98 2.54 3.470 (7) 158

Symmetry codes: (i) x+1, y, z; (ii) −x+1, y+1/2, −z+1/2; (iii) x+1, −y+1/2, z−1/2.

References

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  3. Jochem, M., Schollmeyer, D. & Detert, H. (2022). Molbank, M1348.
  4. Marfin, S. Y., Solomonov, A. V., Timin, A. S. & Rumyantsev, E. V. (2017). Curr. Med. Chem.24, 2745–2772. [DOI] [PubMed]
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  7. Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
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  9. Stoe & Cie (2020). X-RED and X-AREA. Stoe & Cie, Darmstadt, Germany.
  10. Uppal, T., Graca, M., Vicente, H. & Fronczek, F. R. (2020). CSD Communication (refcode LUSXUV, CCDC 2019427). CCDC, Cambridge, England.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314624008848/hb4485sup1.cif

x-09-x240884-sup1.cif (357.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314624008848/hb4485Isup2.hkl

x-09-x240884-Isup2.hkl (387.2KB, hkl)

CCDC reference: 2263103

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from IUCrData are provided here courtesy of International Union of Crystallography

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