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. Author manuscript; available in PMC: 2024 Nov 3.
Published in final edited form as: Cell. 2024 Sep 26;187(22):6309–6326.e15. doi: 10.1016/j.cell.2024.08.049

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited data

Analyzed summary statistics This paper Tables S1 and S2
Sporadic AD summary statistics This paper, Cruchaga et al.66 Table S4; https://doi.org/10.21203/rs.3.rs-3631708/v1
External Study summary statistics This paper, van Ende et al.,14 Johnson et al.,15 (Mendeley Data) Table S3; https://doi.org/10.1093/brain/awad213; https://doi.org/10.1038/s41591-023-02476-4
Cell type reference Mendeley Data https://doi.org/10.1016/j.neuron.2015.11.013
Software and algorithms


R 4.2.2 Open-source https://cran.r-project.org/
sva 3.30.1 Leek et al.67 https://doi.org/10.1093/bioinformatics/bts034
VennDiagram Open-source https://cran.r-project.org/web/packages/VennDiagram/
ggplot2 Open-source https://cran.r-project.org/web/packages/ggplot2/index.html
SomaDataIO 1.8.0 SomaLogic Operating Co., Inc. https://CRAN.R-project.org/package=SomaDataIO
Biobase 2.42.0 Open-source https://www.bioconductor.org/packages/release/bioc/html/Biobase.html
UniProt Open-source https://www.uniprot.org/
clusterProfiler 4.0 Yu et al.68 https://doi.org/10.1089/omi.2011.0118
Reactome Yu et al.69 https://doi.org/10.1039/c5mb00663e
DisGeNET Pinero et al.70 https://www.disgenet.org/
WGCNA Langfelder and Horvath71 https://doi.org/10.1186/1471-2105-9-559
GSVA Hänzelmann et al.72 https://doi.org/10.1186/1471-2105-14-7
STRING Open-source https://string-db.org/
caret 6.0–93 Open-source https://cran.r-project.org/web/packages/caret/index.html
pROC 1.18.0 Open-source https://doi.org/10.32614/CRAN.package.pROC
Shiny Open-source https://shiny.posit.co