Abstract
Background
The interactions between cancer cells and tumor‐associated macrophages (TAMs) via microRNAs (miRNAs) play crucial roles in malignant potential and drug resistance. However, it remains unclear how lenvatinib‐resistant hepatocellular carcinoma (LR HCC) promotes TAM tumor biology. Here we investigated the crosstalk between LR HCC cells and TAMs for cancer progression and lenvatinib resistance, focusing on an exosomal miRNA.
Methods
We used two bioinformatics software programs to identify miRNAs that target PTEN in gastrointestinal cancers, then investigated exosomal miRNA expression in LR HCC conditioned medium (CM). After modifying TAMs with LR HCC CM (LR TAM), macrophage phenotype and PTEN‐Nrf2 signaling pathway component expression were analyzed in LR TAMs. The malignant potential and drug resistance were investigated in naïve HCC cells cultured with LR TAM CM.
Results
LR HCC cells highly induced M2‐like properties in macrophages compared with naïve HCC cells. Exosomal miR‐301a‐3p expression was increased in LR HCC CM, with higher activation of the PTEN/PI3K/GSK3β/Nrf2 signaling pathway in LR TAMs. Naïve HCC cells were educated with LR TAM CM to promote malignant potential and lenvatinib resistance. Inhibition of exosomal miR‐301a‐3p prevented the malignant potential of LR TAMs. Activation of Nrf2 signaling by LR HCC cell‐derived exosomal miR‐301a‐3p skewed the transformation of macrophages to the M2 phenotype.
Conclusion
Our study provides new findings on the role of miR‐301a‐3p, suggesting it is a promising therapeutic target to improve HCC lenvatinib resistance.
Keywords: drug resistance, exosome, hepatocellular carcinoma, lenvatinib, PTEN
Drug resistance to lenvatinib has become a major concern in treating hepatocellular carcinoma (HCC), while the crosstalk between cancer cells and tumor‐associated macrophages (TAMs) has been reported to play crucial roles in drug resistance. However, the specific mechanisms of lenvatinib resistance in HCC remain unclear. Our study revealed that exosomal miR‐301a‐3p from the cancer cells was associated with drug resistance and malignant behaviors in lenvatinib‐resistant HCC cells via interactions between lenvatinib‐resistant HCC cells and TAMs.

1. INTRODUCTION
The treatment methods for early‐stage hepatocellular carcinoma (HCC) include resection, transplantation, and ablation, but more than 80% of HCC patients are still diagnosed with progressive stage disease with no chance of treatment. 1 Lenvatinib was the second approved first‐line drug for advanced HCC, indicating its noninferior survival benefit compared with sorafenib. 2 Recently, combination immune checkpoint blockade therapy using atezolizumab, a programmed death ligand 1 inhibitor, and bevacizumab, a monoclonal antibody targeting vascular endothelial growth factor (VEGF), has improved patient survival rates compared with sorafenib, and has become the first‐line treatment for HCC. 3 Nevertheless, lenvatinib remains widely used in immune‐excluded HCC cases, and cytokine‐related resistance to tyrosine kinase inhibitor drugs has been reported in HCC. 3 Our previous study reported that the B‐cell‐activating factor/NF‐κB axis in cancer‐associated fibroblasts could induce sorafenib resistance in HCC. 4 However, the specific mechanisms of lenvatinib resistance (LR) in the tumor microenvironment (TME) remain largely unclear. Therefore, further study of LR HCC in the TME may lead to the development of new molecular targets to overcome LR.
The TME is mostly composed of extracellular matrix, fibroblasts, vascular endothelial cells, and immune cells and plays a pivotal role in tumor cell survival and malignancy. 5 Tumor‐associated macrophages (TAMs) are preexisting tissue resident macrophages or recovered monocytes that were activated by TME‐derived cytokines that are inseparable from the TME. 5 Moreover, TAMs, broadly classified as M1 or M2, can receive different microenvironmental signals, resulting in a multifunctional and heterogeneous phenotype. 5 M1 macrophages trigger the inflammatory precancer niche and lead to initial tumorigenic mutations, while M2 macrophages release a variety of growth factors and support an immunosuppressive TME. 6 Additionally, M2 TAMs have been shown to correlate with tumor growth, angiogenesis, and the epithelial‐mesenchymal transition (EMT) in HCC. 7
Exosomes are small extracellular vesicles that contain various molecules as cargo, including microRNAs (miRNAs), messenger RNAs (mRNAs), DNA, and proteins. They contribute to tumor proliferation and drug resistance in intercellular communication within the TME. 8 miRNAs are small endogenous noncoding RNA molecules that negatively regulate gene expression and translation by acting on specific target mRNAs. 9 In the TME, exosomal miRNAs from cancer cells play crucial roles in macrophage polarization. 10 However, the miRNA‐specific effects on tumor progression and drug resistance in the TME remain unclear.
The nuclear translocation and upregulation of nuclear factor erythroid‐derived 2‐like 2 (Nrf2) can promote tumor progression and chemotherapy resistance in HCC. 11 Nrf2 helps maintain the equilibrium of drug and oxidative stress and can enhance cancer cell survival by activating the transcription of several antioxidant genes. 12 Activation of the PI3K/AKT/glycogen synthase kinase‐3 beta (GSK3β) signaling pathway increases the nuclear accumulation of Nrf2, 13 and its continuous activation is strongly linked to cell transformation, tumorigenesis, tumor metastasis, and angiogenesis. 14 Meanwhile, PTEN suppressed tumor induction by directly inhibiting the PI3K/AKT signaling pathway and was associated with Nrf2. 10
Recently, miR‐301a‐3p was reported as a multifunctional miRNA targeting the PTEN/PI3K/AKT signaling pathway. 10 , 15 miR‐301a‐3p contributes to tumor malignancy by regulating the PTEN/AKT pathway and was related to the M2 macrophage polarization in the TME of pancreatic and esophageal cancers. 10 , 15 Moreover, miR‐301a‐3p mediated the acquisition of trastuzumab resistance in gastric cancer. 16 Therefore, miR‐301a‐3p plays an important role in tumor progression, M2 polarization of TAMs, and drug resistance.
In the current study, LR HCC cell lines were established to elucidate the mechanism of malignant potential and drug resistance through TAM regulation, focusing on the interplay between exosomal miRNAs, cytokines, and the PTEN/Nrf2 signaling pathways.
2. MATERIALS AND METHODS
2.1. Cell culture
The human HCC cell lines Huh‐7 (Huh) (RRID: CVCL_0336) and PLC/PRF/5 (PLC) (RRID: CVCL_0485) (Japanese Collection of Research Bioresources Cell Bank, Osaka, Japan) were cultured in Dulbecco's modified Eagle medium (DMEM) (Thermo Fisher Scientific, Waltham, MA, USA). The human monocyte cell line THP‐1 (RRID: CVCL_0006) (the Japanese Collection of Research Bioresources Cell Bank) was cultured in RPMI‐1640 (Thermo Fisher Scientific). All media described above were supplemented with 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin solution (Thermo Fisher Scientific). All cells were cultured at 37°C in a humidified incubator with 5% CO2. Experiments were conducted when cells were in the logarithmic growth phase. The THP‐1 cells were treated with 150 nM phorbol‐12‐myristate‐13‐acetate (PMA; Sigma‐Aldrich; Merck, Darmstadt, Germany) for 48 h to induce the M0 macrophages (M0). All human cell lines have been authenticated using STR profiling within the last 3 y. All experiments were performed with mycoplasma‐free cells.
2.2. The lenvatinib half maximal inhibitory concentration (IC50) of each cell line
Cells (1 × 104) treated with different concentrations of lenvatinib were cultured in 96‐well plates for 72 h. Cell viability was examined using a Cell Counting Kit‐8 (CCK‐8) (Dojindo Molecular Technologies, Kumamoto, Japan) by measuring the absorbance values at 450 nm with a microplate reader SoftMax Pro 7 (Molecular Devices, San Jose, CA, USA). Cell viability was represented by the percentage of the absorbance value for the control cells. Lenvatinib IC50 curves of each cell line were analyzed and plotted using GraphPad Prism v. 9.3 software (GraphPad Software, Boston, MA, USA).
2.3. Establishment of LR cell lines
The LR Huh (HuhLR) and PLC (PLCLR) cell lines were established from naïve Huh and PLC cells according to a protocol of continuous exposure to increasing lenvatinib concentrations and stepwise selection. HCC cells were treated with lenvatinib, with concentrations gradually increasing by 0.5–2.0 μM per week. 17 Approximately 4 mo later, the LR HCC cell lines were established and cultured in DMEM with 26.0 μM lenvatinib (FC71772; Carbosynth, Compton, UK), which was first dissolved in dimethyl sulfoxide (DMSO.) The resulting lenvatinib IC50 values of HuhLR and PLCLR cells were approximately three to four times higher than that of naïve HCC cells (27.0 vs 6.0 μM and 46.7 vs 11.9 μM, respectively) (Figure 1A).
FIGURE 1.

Characteristics of LR HCC cells cocultured with TAMs. (A) The cell viabilities of HCC and LR HCC cells were examined by CCK‐8 assays, then cultured with complete growth medium with increasing doses of lenvatinib. (B) TAMs were stimulated with the CM of naïve HCC or LR HCC cells. (C) Morphology of TAMs cultured with the CM of M0, HCC, or LR HCC cells. (D) CD163 and CD206 expression levels were evaluated by qRT‐PCR in each TAM group. (E) PTEN and Nrf2 expression levels in TAMs were detected by qRT‐PCR after being stimulated with the CM of M0, HCC, or LR HCC cells. (F) Intranuclear Nrf2 protein expression levels in TAMs were detected by western blot analysis (W; whole, C; cytoplasm, N; nuclear). (G) TAMs stimulated with the CM of M0, Huh‐, or HuhLR cells were stained with Nrf2 (green) and DAPI (blue). White arrowheads show the enhanced intranuclear Nrf2 signals. (H) Protein expression levels of signaling pathway components downstream of PTEN were detected in TAMs by western blot analysis after being stimulated with the CM of M0, Huh, or HuhLR cells. CM, conditioned medium; HCC, hepatocellular carcinoma; LR, lenvatinib‐resistant; qRT‐PCR, quantitative reverse transcription‐polymerase chain reaction; TAM, tumor‐associated macrophage. The data are shown as mean ± standard deviation (SD). *P < 0.05, **P < 0.01, ***P < 0.001. Bar = 100 μm.
2.4. Conditioned medium (CM) and TAM culturing
The naïve HCC, LR HCC, and M0 cells were cultured to 80% to 90% confluency, washed twice with phosphate‐buffered saline (PBS), then incubated with DMEM without FBS for 48 h at 37°C. The supernatant was collected, centrifuged (2000 g; 10 min) at room temperature, and filtered using a 0.2 μm filter. The CM was stored at −80°C, avoiding repeated freeze–thaw cycles. The M0 cells were treated with HCC‐ or LR HCC‐derived CM for 48 h at 37°C to obtain TAMs or LR TAMs, respectively. Next, the CM from M0, TAMs, and LR TAMs were collected in the same manner as described above, then mixed with complete medium (1:1) for cell proliferation, wound healing, and migration assays. Cell morphology was captured using a light microscope (CKX41; Olympus, Tokyo, Japan).
2.5. RNA interference
The miR‐301a‐3p inhibitor negative controls (INC) (4464076) or inhibitors (MH10978, Thermo Fisher Scientific) were transfected at a final concentration of 100 nM into HuhLR cells with lipofectamine 2000 reagent (Invitrogen, Thermo Fisher Scientific) according to the manufacturer's instructions. Briefly, 24 h after transfection the medium was replaced with DMEM without FBS for collecting the CM of INC and inhibited HuhLR cells. Thereafter, the CM from INC and inhibited TAMs (HuhLR) were collected in the same manner as described above and were mixed with complete medium (1:1) for further experiments.
2.6. Exosome isolation and identification
The cell lines were cultured in complete growth medium until 80% to 90% confluent, then washed twice with PBS. Thereafter, they were incubated with DMEM without FBS for 48 h at 37°C. Then, 30 mL of supernatant was collected and centrifuged at 2000 g for 30 min, then transferred to a new tube without disturbing the pellet. The exosomes were also isolated by a precipitation method using Total Exosome Isolation (from cell culture media) (Thermo Fisher Scientific) according to the manufacturer's instructions. Briefly, CM samples were incubated with the Total Exosome Isolation reagent for over 12 h, centrifuged at 10 000 g for 1 h, and exosomes were resuspended and stored at −80°C for further use.
Subsequently, the size and concentration of exosomes were evaluated by nanoparticle tracking analysis system (Nanosight NS300, Malvern Panalytical, UK) according to company protocols.
2.7. Cell proliferation assay
The tumor cells were seeded at a density of 1 × 104 cells/well in 96‐well plates and cultured with complete growth medium at 37°C. After cell adhesion, the cells were cultured with the indicated CM at 37°C. Cell proliferation was analyzed from day 0 to day 4 using CCK‐8 (Dojindo Molecular Technologies,) by measuring the absorbance values at 450 nm with SoftMax Pro 7.
2.8. Wound‐healing assay
Wound‐healing assays were performed as previously described. 18 Briefly, the cancer cells were seeded and grown to 90% confluency in 6‐well plates. The cells were cultured with indicated CM in each group for 12 h at 37°C. The images of the wound area were captured using a light microscope (40× magnification, DP22‐CU; Olympus) at 0 and 12 h after scratching. The cell migration rates were calculated using Image J v1.46r software (National Institutes of Health, Bethesda, MD, USA).
2.9. Migration assay
Migration assays were performed as previously described. 18 Briefly, serum‐starved cancer cells were seeded at a density of 2.0 × 104 cells in the upper chamber of a 24‐well Transwell system with 8.0 μm pores (Corning, Corning, NY, USA). The CM FBS concentrations were 1% in the upper chambers and 5% in the lower chambers. After incubation for 24 h at 37°C, the cancer cells were fixed and stained with 100% methanol and 0.1% crystal violet. The number of migrated cells was counted in three random fields of view under a light microscope (100× magnification, BX43; Olympus).
2.10. RNA extraction and quantitative reverse transcription‐polymerase chain reaction (qRT‐PCR)
qRT‐PCR was performed as previously described. 18 Briefly, the following TaqMan assays (assay identification number) and primers were used: CD163 (Hs00174705_ml), CD206 (Hs00267207_ml), PTEN (Hs002621230_sl), NRE2L2 (Hs00975961_g1), E‐cadherin (Hs00170423_ml), N‐cadherin (Hs00169953_ml), Snail (Hs00195591_ml), and vimentin (Hs00185584_ml). GAPDH (Hs02786624_g1) was used as an internal control for normalization. Relative expression values of all genes were calculated as ratios to GAPDH expression. All primers were purchased from Thermo Fisher Scientific. The 2−ΔΔCt method was used to analyze the data. Fold changes as relative mRNA expression levels in each experimental group were compared with the control group.
The exosomal RNAs in the CM were extracted using the miRNeasy Mini Kit (Qiagen, Venlo, The Netherlands) according to the manufacturer's instructions. Reverse transcription and qRT‐PCR for exosomal miRNAs, miR‐301a‐3p, and internal reference miR‐16‐5p were performed using the miRNA RT‐PCR Quantitation Kit (Qiagen). The 2−ΔΔCt method was used to analyze the relative expression values of exosomal miRNAs.
2.11. Analysis of miR‐301a‐3p expression levels and patient survival rates
The miR‐301a‐3p expression levels and survival outcomes in HCC patients were obtained from a public database, Genome Data Commons, The Cancer Genome Atlas (GDC‐TCGA) Liver Cancer via the University of California, Santa Cruz Xena platform (https://gdc.xenahubs.net). In total, 372 human HCC samples and 50 human liver samples from the GDC‐TCGA Liver Cancer dataset of stem loop expression―miRNA Expression Quantification were analyzed. During the analysis of HCC patient overall survival rates, six patients were excluded who had no recorded survival data. The median value of miR‐301a‐3p was used as the cutoff value to divide the patients into two groups.
2.12. Western blot analysis
Western blot analysis was performed according to the method previously reported. 18 Briefly, RIPA buffer (Thermo Fisher Scientific) containing both a protease inhibitor cocktail (Sigma‐Aldrich, St. Louis, MO, USA) and PhosSTOP phosphatase inhibitor cocktail (Roche, Tokyo, Japan) was used for total protein extraction. Additionally, lysis or extraction buffer (Thermo Fisher Scientific) containing protease inhibitor cocktail, PhosSTOP phosphatase inhibitor cocktail, and 0.1 M dithiothreitol (Thermo Fisher Scientific) was used to extract intranuclear or cytoplasm proteins. The proteins were detected with chemiluminescence (GE Healthcare, Little Chalfont, UK). The primary antibodies for western blotting are listed in Table 1.
TABLE 1.
Primary antibodies used in western blot analysis.
| Name | Product number | Company | Dilution ratio |
|---|---|---|---|
| Histone H3 antibody | #9649 | Cell Signaling | 1:1000 |
| β‐Actin antibody | #4970 | Cell Signaling | 1:3000 |
| Nrf2 antibody | ab137550 | Abcam | 1:500 |
| PTEN antibody | #9188 | Cell Signaling | 1:1000 |
| AKT antibody | #4691 | Cell Signaling | 1:1000 |
| pAKT antibody | #4060 | Cell Signaling | 1:500 |
| GSK3β antibody | #12456 | Cell Signaling | 1:500 |
| pGSK antibody | #9336 | Cell Signaling | 1:500 |
| PI3K antibody | #4249 | Cell Signaling | 1:500 |
| N‐cadherin antibody | #13116 | Cell Signaling | 1:1000 |
| E‐cadherin antibody | #3195 | Cell Signaling | 1:1000 |
| Vimentin antibody | #5741 | Cell Signaling | 1:1000 |
| CD63 antibody | #EXOAB‐CD63A‐1 | System Biosciences | 1:1000 |
2.13. Immunofluorescence staining
The iPGell (Geno staff, Tokyo, Japan) was used to gelatinize the indicated cells according to the manufacturer's protocol. Then, the thinly sliced gelatinized cell slides were incubated with an anti‐Nrf2 primary antibody (Abcam, ab137550; Cambridge, UK) overnight at 4°C. After fluorophore‐conjugated second antibody incubation, the cells were counterstained with DAPI (P306931; Thermo Fisher Scientific). Finally, the slides were observed under a fluorescence microscope (Keyence, Itasca, IL, USA).
2.14. Enzyme‐linked immunoassay (ELISA) analysis
The CMs of indicated cells were collected in the same manner as aforementioned for the measurement of cytokines concentration. The human ELISA kit for VEGF (R&D Systems, Minneapolis, MN, USA) was utilized according to the manufacturer's protocol.
2.15. Statistical analysis
All data are presented as the mean ± standard deviation. Statistical analysis and graphing were conducted using GraphPad Prism v.9.3 software, ImageJ software, and R v.4.2.0 software. Comparisons between two groups were analyzed using the Mann–Whitney test. Differences among multiple groups were analyzed using one‐way analysis of variance (ANOVA) followed by Tukey's post‐hoc test. Survival analysis data were plotted using the Kaplan–Meier method. All experiments were repeated at least three times. P‐values <0.05 (two‐sided) were considered statistically significant.
3. RESULTS
3.1. Characteristics of TAMs cultured in LR HCC CM
The THP‐1 cells were exposed to PMA for 48 h to stimulate their differentiation to the M0 phenotype, as previously reported. 17 CM from the HCC cells were used as culture medium for the M0 macrophages for 48 h. To imitate the interactions between HCC and TAMs in the TME, the M0 macrophages were exposed to cancer cell‐derived CM to obtain TAMs (Huh/PLC) and LR TAMs (HuhLR/PLCLR), respectively (Figure 1B). LR TAMs exhibited an elongated and spindle‐shaped morphology, similar to that of M2‐polarized macrophages 19 (Figure 1C). After activation by the HCC CM, expression levels of M2 macrophage markers CD163 and CD206 were significantly upregulated in LR TAMs, indicating that the M0 cells transdifferentiated into M2 polarized TAMs (Figure 1D). PTEN is the primary regulator of the procancer metastatic switch via the PI3K/AKT signaling pathways. 15 In TAMs cultured with LR HCC CM, PTEN mRNA expression levels were significantly decreased, while Nrf2 mRNA expression levels were significantly increased compared with M0 CM and HCC CM (P < 0.05, Figure 1E). Additionally, the protein expression levels of intranuclear Nrf2 were promoted in TAMs (HuhLR) (Figure 1F). Moreover, fluorescent immunostaining showed enhanced intranuclear Nrf2 signals (Figure 1G). Additionally, enhanced nuclear Nrf2 signal was observed in TAMs around the residual tumors in patients who underwent hepatic resection after an effective response to lenvatinib compared with TAMs around normal HCC (Figure S1). For the PTEN signaling pathway, PI3K and p‐GSK3β protein expression levels were upregulated in the TAMs (HuhLR) (Figure 1H).
3.2. Enhancement of the malignant potential and drug resistance of naïve HCC cells educated by LR TAM CM
All three types of CM, from M0, TAMs, and LR TAMs, were collected and added to naïve HCC cells. Compared with CM from M0 and TAMs, LR TAM CM significantly increased the proliferation and migration capabilities of the cancer cells (P < 0.05, Figure 2A–C). The lenvatinib IC50 value of naïve HCC cells cultured with TAM (HuhLR) CM was twice as high as that of the cells cultured with TAM (Huh) CM (14.0 vs 7.0 μM) (Figure 2D). VEGF concentration was higher in LR TAM CM than in TAM CM and CM of M0 macrophages (Figure 2E). These data suggest that the cancer cells cultured with TAM (HuhLR) CM acquired lenvatinib drug resistance. In the cancer cells cultured with TAM (HuhLR) CM, the mRNA expression levels of EMT markers N‐cadherin and vimentin were significantly increased, while E‐cadherin mRNA expression was significantly decreased (P < 0.05, Figure 2F). The same expression patterns were observed at the protein level (Figure 2G). These data suggest that the naïve HCC cells cultured with TAM (HuhLR) CM promoted the EMT ability.
FIGURE 2.

Enhancement of the malignant potential and drug resistance of naïve HCC cells cocultured with LR TAM CM. (A–C) The proliferation and migration capabilities of naïve HCC cells cultured with the CM of M0, HCC, or LR HCC cells were detected. (D) Cell viability was detected by CCK‐8 assays in naïve HCC cells cultured with the CM of TAM (Huh) or TAM (HuhLR) cells for 24 h. (E) VEGF concentration was higher in LR TAM CM than in TAM CM and CM of M0 macrophages. (F) E‐cadherin, N‐cadherin, Snail, and vimentin mRNA expression levels in naïve HCC cells were detected by qRT‐PCR after being stimulated with the CM of M0, TAM (Huh), or TAM (HuhLR) cells for 24 h. (G) E‐cadherin, N‐cadherin, and vimentin protein expression levels were detected by western blot analysis in naïve HCC cells cultured with the CM of M0, TAM (Huh), or TAM (HuhLR) cells for 24 h. CM, conditioned medium; HCC, hepatocellular carcinoma; LR, lenvatinib‐resistant; TAM, tumor‐associated macrophage. The data are shown as mean ± standard deviation (SD). *P < 0.05, **P < 0.01, ***P < 0.001. Bar = 100 μm.
3.3. The roles of exosomal miR‐301a‐3p in HCC
To identify a specific miRNA that can regulate Nrf2 signaling by directly targeting PTEN, two bioinformatics software programs, Target Scan 20 and miDIP, 21 were used to predict miRNAs that could possibly target PTEN mRNA. Ten miRNAs were identified, among which miR‐301a‐3p expression levels were significantly upregulated in HCC tissues compared with nontumoral tissues in the miRNA expression data from GDC‐TCGA Liver Cancer (Figure 3A). Reports have indicated interactions between cancer cells and TAMs in gastrointestinal cancers involving miR‐301a‐3p. 10 , 15 Furthermore, miR‐301a‐3p upregulation was significantly associated with poor prognosis in HCC patients from GDC‐TCGA Liver Cancer data (Figure 3B). The size and particle concentration of exosomes from HCC‐derived CMs were evaluated (Figure 3C), and CD63, an exosome marker, was enriched in HCC‐derived CMs (Figure 3D). Moreover, qRT‐PCR results demonstrated that the exosomal miR‐301a‐3p levels were significantly upregulated both in HuhLR and PLCLR cells compared with parental naïve HCC cells (Figure 3E). These results demonstrate that miR‐301a‐3p is enriched in exosomes derived from LR HCC cells.
FIGURE 3.

The exosomal miR‐301a‐3p expression levels in HCC. (A) The expression patterns of miR‐301a‐3p in the HCC tissues and nontumoral tissues in microRNA expression data from the Genome Data Commons the Cancer Genome Atlas Liver Cancer. (B) High miR‐301a‐3p expression levels were significantly associated with poor survival in HCC patients from the GDC TCGA Liver Cancer dataset (P = 0.002). (C) Nanosight particle tracking was used to analyze the size and particle concentration secreted by HCC cells. (D) CD63 protein expression in HCC‐derived exosomes was detected by western blot analysis. (E) Quantification of exosomal miR‐301a‐3p expression in HCC and LR HCC cells. HCC, hepatocellular carcinoma; LR, lenvatinib‐resistant. The data are shown as mean ± standard deviation (SD). *P < 0.05. **P < 0.01. ***P < 0.001.
3.4. Inhibition of huh LR‐derived exosomal miR‐301a‐3p decreases malignant potential by downregulating TAM M2 polarization
We next investigated the effects of inhibiting exosomal miR‐301a‐3p. HuhLR cells were transfected with the INC or miR‐301a‐3p inhibitor, then the transfection efficiencies were evaluated using qRT‐PCR (Figure 4A). Further qRT‐PCR analysis demonstrated downregulation of M2 markers (CD206 and CD163) and Nrf2, as well as upregulation of PTEN, in TAMs cultured with CM from HuhLR cells transfected with the miR‐301a‐3p inhibitor (Figure 4B). Additionally, western blotting demonstrated increased protein expression levels of PTEN and decreased protein expression levels of Nrf2 in TAMs cultured with CM from HuhLR cells transfected with the miR‐301a‐3p inhibitor (Figure 4C,D). These results demonstrate that exosomal miR‐301a‐3p could induce M2 macrophage polarization and upregulate components of the PTEN/Nrf2 pathway. We then examined the effects of inhibiting HuhLR‐derived miR‐301a‐3p on TAMs. CM from macrophages cocultured with exosomes derived from miR‐301a‐3p inhibitor‐transfected HuhLR cells decreased the cell proliferation and migration abilities (Figure 4E–G). The IC50 values for lenvatinib of naïve Huh cell lines after culturing with the indicated CMs for 24 h showed a nearly 2‐fold increase in TAM (HuhLR)‐CM compared to the normal culture, while in TAM‐CM from HuhLR cells transfected with the miR‐301a‐3p inhibitor, the values were similar to those of the normal culture (normal culture: 6.5 μM, TAM (HuhLR)‐CM: 12 μM, TAM transfected with INC‐CM: 10.0 μM, inhibited TAM‐CM; 7.3 μM, respectively) (Figure 4H). These results demonstrate that miR‐301a‐3p inhibition in exosomes derived from LR HCC cells downregulated the tumor malignancy and drug resistance via regulating the M2 polarization of TAMs.
FIGURE 4.

Decreased malignant potential by downregulating M2 polarization of TAMs through inhibition of HuhLR‐derived exosomal miR‐301a‐3p. (A) Efficiency of miR‐301a‐3p inhibitor transfection into HuhLR cells was assessed using qRT‐PCR for exosomal miR‐301a‐3p expression. (B) The mRNA expression levels of CD163, CD206, PTEN, and Nrf2 were evaluated by qRT‐PCR in the M0, HuhLR, INC HuhLR, and inhibited HuhLR cocultured TAMs. (C,D) PTEN and Nrf2 protein expression levels in the M0, HuhLR, INC HuhLR, and inhibited HuhLR cocultured TAMs were detected by western blot analysis. (E,F,G) The proliferation and migration capabilities of naïve HCC cells stimulated with the CM of M0, TAM (HuhLR), INC TAM (HuhLR), or inhibited TAM (HuhLR) cells. (H) The IC50 values for lenvatinb of naive Huh cell lines stimulated with the CMs of TAM (HuhLR), INC TAM (HuhLR) or inhibited TAM (HuhLR) for 24h". HCC, hepatocellular carcinoma; INC, inhibited negative control; LR, lenvatinib‐resistant; TAM, tumor‐associated macrophage. The data are shown as mean ± standard deviation (SD). *P < 0.05, **P < 0.01, ***P < 0.001. Bar = 100 μm.
4. DISCUSSION
The present study revealed that the LR HCC cells had upregulated exosomal miR‐301a‐3p expression levels, and CM from these cells could stimulate M2‐polarlized TAMs and activate the PTEN/PI3K/GSK3B/Nrf2 pathway, leading to increased malignant potential and drug resistance of naïve HCCs via EMT. This study also demonstrated that inhibiting exosomal miR‐301a‐3p from LR HCC cells could suppress HCC cell proliferation and migration abilities and drug resistance. The possible mechanisms of the current study are shown in Figure 5.
FIGURE 5.

Schematic representation of the proposed interactions between LR HCC cells and TAMs. TAM, tumor‐associated macrophage; HCC, hepatocellular carcinoma; LR, lenvatinib‐resistant.
Peripheral blood monocytes are activated to generate a broad spectrum of TAMs that are responsive to various chemokines and growth factors in the TME. 22 TAMs are mainly divided into two different polarized types: M1 or M2. Activated M1 macrophages have antitumor and proinflammatory properties, specifically through secretion of cytokines such as interleukin (IL)‐1 and IL‐6. However, activated M2 macrophages have antiinflammatory and protumorigenic features and primarily express CD163 and CD206. 22 In the present study, LR HCC cells had significantly higher CD163 and CD206 expression levels compared with the naïve HCC cells. M2 macrophages have been demonstrated to induce malignant potential, including through increased cell proliferation, migration, invasion, and angiogenesis in HCC. 23
Lenvatinib was approved for the treatment of unresectable HCC cases and was demonstrated to be noninferior to sorafenib as a first‐line agent. 2 Nevertheless, many patients with advanced HCC failed to obtain any long‐term benefit from systemic therapy after developing drug resistance. 24 Many studies have investigated the mechanisms of LR, with PDGF‐AA, EGFR, multidrug resistance protein 1 and breast cancer resistance protein transporters, and STAT3/ABCB1 signaling having been implicated in LR HCC. 25 , 26 , 27 , 28 Although few studies have examined LR in HCC with a focus on the TME, this study demonstrated that miR‐301a‐3p in the TME was associated with the LR mechanisms. Therefore, miRNAs may be an important mediator involved in LR in the TME. Exosomal miR‐301a‐3p is a multifunctional miRNA that can promote tumor growth, modulate inflammatory responses, and mediate drug tolerance in gastrointestinal cancers. 10 , 15 Additionally, exosomal miR‐301a‐3p from esophageal cancer cells have been found to induce M2 polarization of macrophages through upregulating phosphorylated AKT by targeting the PTEN/PI3K signaling pathway in TAMs. 10 Our study demonstrated that exosomal miR‐301a‐3p secreted by LR HCC cells could induce M2 polarization through the PTEN/PI3K/AKT/GSK3β signaling pathway. Our findings indicated that exosomal miR‐301a‐3p is possibly an important messenger for intercellular signaling between LR HCC cells and TAMs in the TME.
PI3K is partially implicated in myeloid cell infiltration into tumors and the regulation of tumor growth by enhancing the polarization of neutrophils and controlling immune suppression. 29 , 30 Recently, PI3K was found to regulate macrophage M2 polarization by inhibiting immune reactions and enhancing the invasion of pancreatic ductal adenocarcinoma cells. 31 Our study showed that activation of exosomal miR‐301a‐3p/PI3K signaling promoted polarization of M2 macrophages, leading to increased HCC cell migration and EMT. Degradation of PTEN was inversely associated with constitutive activation of the PI3K/AKT signaling pathway. 15 The PI3K/AKT/mTOR signaling pathway was strongly associated with activation and polarization of macrophages, as well as expression regulation of GSK3β and Nrf2/HO‐1. 29 , 30 Then, PTEN downregulation resulted in increased PI3K, p‐AKT, p‐GSK3β, and Nrf2 expression levels. Accordingly, our findings demonstrated that miR‐301a‐3p plays an important role in enhancing M2 polarization by regulating the PTEN/PI3K/GSK3β/Nrf2 pathway.
Previous studies have demonstrated that Nrf2 protects cancer cells and enhances cancer progression by reducing the endogenous reactive oxygen species levels. 32 Nrf2 overexpression can enhance the resistance of cancer cells to chemotherapeutic drugs, such as cisplatin, doxorubicin, and etoposide. 33 Additionally, Nrf2 could evoke macrophage polarization toward the M2 phenotype via NF‐κB genes. 4 Similarly, our research demonstrated that Nrf2 overexpression in macrophages elevated the expression levels of M2 markers. In addition, M2‐phenotype TAMs have been reported to promote progression and cancer stemness in breast cancer via the VEGF secretion. 34 Likewise, our previous studies supported that Nrf2 overexpression in TAMs promoted VEGF secretion and was associated with tumor malignancy of HCCs by inducing the EMT. 18 , 35 Although EMT acquisition is known as one of the mechanisms of drug resistance in cancer cells, and the present study suggested that EMT may promote malignant behaviors and lenvatinib drug resistance via VEGF in the naïve HCC cells cultured with LR TAM‐CM. Taken together, Nrf2 upregulation in TAMs led to M2 polarization and could be associated with malignant potential and drug resistance via EMT in LR HCC cells.
The present study has certain limitations. The results were based on in vitro experiments using miRNA inhibitor transfection in HCC cell lines. In vivo animal models and further investigation into the effects of miRNA inhibition on the crosstalk between LR HCC cells and TAMs are necessary.
In conclusion, we found that exosomal miR‐301a‐3p from LR HCC cells could stimulate the polarization of macrophages to the M2 phenotype through activation of the PTEN/PI3K/GSK3β/Nrf2 signaling pathway. These findings not only demonstrate that exosomal miRNA‐mediated crosstalk between HCC cells and TAMs in the TME can contribute to TAM M2 polarization, but also provide new insights into the possible roles of miR‐301a‐3p in HCC progression and lenvatinib drug resistance.
AUTHOR CONTRIBUTIONS
Y.M. and M.S. conceived the study and supervised the project. Y.W. performed the experiments, analyzed and interpreted the data, and wrote the original draft of the article. Y.M., Y.S., H.T., S.Y., T.I., T.T., and M.S. were also involved in data analysis and final article preparation. All authors reviewed and agreed to the published version of the article. The work reported in the article was performed by the authors, unless clearly specified in the text.
FUNDING INFORMATION
This study was partly supported by the Research Program on Hepatitis of the Japanese Foundation for Multidisciplinary Treatment of Cancer, the Japan Agency for Medical Research and Development (AMED) grant numbers 23fk0210103s0202 and 23fk0210103h0002, and a Grant‐in‐Aid for Scientific Research (grant no. 23K08072). This study was also funded by Taiho Pharmaceutical Co., Ltd. (Tokyo, Japan).
CONFLICT OF INTEREST STATEMENT
M.S. received research grants from Taiho Pharmaceutical Co., Ltd., Chugai Pharmaceutical Co., Ltd., and EPS Holdings, and scholarship donations from Taiho Pharmaceutical Co., Ltd., Chugai Pharmaceutical Co., Ltd., AbbVie G.K., Johnson & Johnson K.K., Eisai Co., Ltd., Bayer Yakuhin, Ltd., Ono Pharmaceutical Co., Ltd., and Takeda Pharmaceutical Co., Ltd. The other authors have no competing interests related to this study.
ETHICS STATEMENTS
Approval of the research protocol: N/A.
Informed Consent: N/A.
Registry and the Registration No. of the study/trial: N/A.
Animal Studies: All procedures followed the ethical standards of the responsible committee on human experimentation (institutional and national) and the Helsinki Declaration of 1964 and later versions.
Supporting information
Figure S1.
ACKNOWLEDGMENTS
We thank J. Iacona, Ph.D., from Edanz (https://jp.edanz.com/ac) for editing a draft of this article.
Waki Y, Morine Y, Saito Y, Teraoku H, Yamada S, Ikemoto T, et al. Lenvatinib‐resistant hepatocellular carcinoma promotes malignant potential of tumor‐associated macrophages via exosomal miR‐301a‐3p. Ann Gastroenterol Surg. 2024;8:1084–1095. 10.1002/ags3.12814
DATA AVAILABILITY STATEMENT
Data sources and handling of the publicly available datasets used in this study are described in the Materials and Methods. Further details and other data that support the findings of this study are available from the corresponding authors upon request.
REFERENCES
- 1. El‐Serag HB. Hepatocellular carcinoma. N Engl J Med. 2011;365(12):1118–1127. [DOI] [PubMed] [Google Scholar]
- 2. Kudo M, Finn RS, Qin S, Han KH, Ikeda K, Piscaglia F, et al. Lenvatinib versus sorafenib in first‐line treatment of patients with unresectable hepatocellular carcinoma: a randomised phase 3 noninferiority trial. Lancet. 2018;391(10126):1163–1173. [DOI] [PubMed] [Google Scholar]
- 3. Zhu AX, Abbas AR, de Galarreta MR, Guan Y, Lu S, Koeppen H, et al. Molecular correlates of clinical response and resistance to atezolizumab in combination with bevacizumab in advanced hepatocellular carcinoma. Nat Med. 2022;28(8):1599–1611. [DOI] [PubMed] [Google Scholar]
- 4. Gao L, Morine Y, Yamada S, Saito Y, Ikemoto T, Tokuda K, et al. The BAFF/NFkappaB axis is crucial to interactions between sorafenib‐resistant HCC cells and cancer‐associated fibroblasts. Cancer Sci. 2021;112(9):3545–3554. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5. Nasrollahzadeh E, Razi S, Keshavarz‐Fathi M, Mazzone M, Rezaei N. Pro‐tumorigenic functions of macrophages at the primary, invasive and metastatic tumor site. Cancer Immunol Immunother. 2020;69(9):1673–1697. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6. Komohara Y, Fujiwara Y, Ohnishi K, Takeya M. Tumor‐associated macrophages: potential therapeutic targets for anti‐cancer therapy. Adv Drug Deliv Rev. 2016;99(Pt B):180–185. [DOI] [PubMed] [Google Scholar]
- 7. Li Z, Wu T, Zheng B, Chen L. Individualized precision treatment: targeting TAM in HCC. Cancer Lett. 2019;458:86–91. [DOI] [PubMed] [Google Scholar]
- 8. Dai J, Su Y, Zhong S, Cong L, Liu B, Yang J, et al. Exosomes: key players in cancer and potential therapeutic strategy. Signal Transduct Target Ther. 2020;5(1):145. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9. Hausser J, Zavolan M. Identification and consequences of miRNA–target interactions—beyond repression of gene expression. Nat Rev Genet. 2014;15(9):599–612. [DOI] [PubMed] [Google Scholar]
- 10. Shou Y, Wang X, Chen C, Liang Y, Yang C, Xiao Q, et al. Exosomal miR‐301a‐3p from esophageal squamous cell carcinoma cells promotes angiogenesis by inducing M2 polarization of macrophages via the PTEN/PI3K/AKT signaling pathway. Cancer Cell Int. 2022;22(1):153. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11. Gao L, Morine Y, Yamada S, Saito Y, Ikemoto T, Tokuda K, et al. Nrf2 signaling promotes cancer stemness, migration, and expression of ABC transporter genes in sorafenib‐resistant hepatocellular carcinoma cells. PLoS One. 2021;16(9):e0256755. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12. Kensler TW, Wakabayashi N, Biswal S. Cell survival responses to environmental stresses via the Keap1‐Nrf2‐ARE pathway. Annu Rev Pharmacol Toxicol. 2007;47:89–116. [DOI] [PubMed] [Google Scholar]
- 13. Pérez‐Sen R, Queipo MJ, Morente V, Ortega F, Delicado EG, Miras‐Portugal MT. Neuroprotection mediated by P2Y13 nucleotide receptors in neurons. Comput Struct Biotechnol J. 2015;13:160–168. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14. Mayer IA, Arteaga CL. The PI3K/AKT pathway as a target for cancer treatment. Annu Rev Med. 2016;67:11–28. [DOI] [PubMed] [Google Scholar]
- 15. Wang X, Luo G, Zhang K, Cao J, Huang C, Jiang T, et al. Hypoxic tumor‐derived Exosomal miR‐301a mediates M2 macrophage polarization via PTEN/PI3Kγ to promote pancreatic cancer metastasis. Cancer Res. 2018;78(16):4586–4598. [DOI] [PubMed] [Google Scholar]
- 16. Guo J, Zhong X, Tan Q, Yang S, Liao J, Zhuge J, et al. miR‐301a‐3p induced by endoplasmic reticulum stress mediates the occurrence and transmission of trastuzumab resistance in HER2‐positive gastric cancer. Cell Death Dis. 2021;12(7):696. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17. Chen W, Yang J, Zhang Y, Cai H, Chen X, Sun D. Regorafenib reverses HGF‐induced sorafenib resistance by inhibiting epithelial‐mesenchymal transition in hepatocellular carcinoma. FEBS Open Bio. 2019;9(2):335–347. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18. Okikawa S, Morine Y, Saito Y, Yamada S, Tokuda K, Teraoku H, et al. Inhibition of the VEGF signaling pathway attenuates tumor‐associated macrophage activity in liver cancer. Oncol Rep. 2022;47(4):71. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19. Dahlem C, Siow WX, Lopatniuk M, Tse WKF, Kessler SM, Kirsch SH, et al. Thioholgamide a, a new anti‐proliferative anti‐tumor agent, modulates macrophage polarization and metabolism. Cancers (Basel). 2020;12(5):1288. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20. McGeary SE, Lin KS, Shi CY, Pham T, Bisaria N, Kelley GM, et al. The biochemical basis of microRNA targeting efficacy. Science. 2019;366(6472):eaav1741. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21. Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild A‐C, Tsay M, et al. mirDIP 4.1—integrative database of human microRNA target predictions. Nucleic Acids Res. 2017;46(D1):D360–D370. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22. Franklin RA, Liao W, Sarkar A, Kim MV, Bivona MR, Liu K, et al. The cellular and molecular origin of tumor‐associated macrophages. Science. 2014;344(6186):921–925. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23. Dong P, Ma L, Liu L, Zhao G, Zhang S, Dong L, et al. CD86+/CD206+, diametrically polarized tumor‐associated macrophages, predict hepatocellular carcinoma patient prognosis. Int J Mol Sci. 2016;17(3):320. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24. Ladd AD, Duarte S, Sahin I, Zarrinpar A. Mechanisms of drug resistance in HCC. Hepatology. 2023;79:926–940. [DOI] [PubMed] [Google Scholar]
- 25. Ao J, Chiba T, Shibata S, Kurosugi A, Qiang N, Ma Y, et al. Acquisition of mesenchymal‐like phenotypes and overproduction of angiogenic factors in lenvatinib‐resistant hepatocellular carcinoma cells. Biochem Biophys Res Commun. 2021;549:171–178. [DOI] [PubMed] [Google Scholar]
- 26. Hu B, Zou T, Qin W, Shen X, Su Y, Li J, et al. Inhibition of EGFR overcomes acquired lenvatinib resistance driven by STAT3‐ABCB1 signaling in hepatocellular carcinoma. Cancer Res. 2022;82:3845–3857. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27. Jin H, Shi Y, Lv Y, Yuan S, Ramirez CFA, Lieftink C, et al. EGFR activation limits the response of liver cancer to lenvatinib. Nature. 2021;595(7869):730–734. [DOI] [PubMed] [Google Scholar]
- 28. Sun D, Liu J, Wang Y, Dong J. Co‐administration of MDR1 and BCRP or EGFR/PI3K inhibitors overcomes lenvatinib resistance in hepatocellular carcinoma. Front Oncol. 2022;12:944537. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29. Kaneda MM, Messer KS, Ralainirina N, Li H, Leem CJ, Gorjestani S, et al. PI3Kγ is a molecular switch that controls immune suppression. Nature. 2016;539(7629):437–442. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30. Rocher C, Singla DK. SMAD‐PI3K‐Akt‐mTOR pathway mediates BMP‐7 polarization of monocytes into M2 macrophages. PLoS One. 2013;8(12):e84009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31. Kaneda MM, Cappello P, Nguyen AV, Ralainirina N, Hardamon CR, Foubert P, et al. Macrophage PI3Kγ drives pancreatic ductal adenocarcinoma progression. Cancer Discov. 2016;6(8):870–885. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32. Namani A, Li Y, Wang XJ, Tang X. Modulation of NRF2 signaling pathway by nuclear receptors: implications for cancer. Biochim Biophys Acta. 2014;1843(9):1875–1885. [DOI] [PubMed] [Google Scholar]
- 33. Wang X‐J, Sun Z, Villeneuve NF, Zhang S, Zhao F, Li Y, et al. Nrf2 enhances resistance of cancer cells to chemotherapeutic drugs, the dark side of Nrf2. Carcinogenesis. 2008;29(6):1235–1243. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34. Wang L, Zhang L, Zhao L, Shao S, Ning Q, Jing X, et al. VEGFA/NRP‐1/GAPVD1 axis promotes progression and cancer stemness of triple‐negative breast cancer by enhancing tumor cell‐macrophage crosstalk. Int J Biol Sci. 2024;20(2):446–463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35. Feng R, Morine Y, Ikemoto T, Imura S, Iwahashi S, Saito Y, et al. Nrf2 activation drive macrophages polarization and cancer cell epithelial‐mesenchymal transition during interaction. Cell Commun Signal. 2018;16(1):54. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Figure S1.
Data Availability Statement
Data sources and handling of the publicly available datasets used in this study are described in the Materials and Methods. Further details and other data that support the findings of this study are available from the corresponding authors upon request.
