Abstract
DNA from T7 phage containing AP (apurinic/apyrimidinic) sites was repaired by the successive actions of three chromatin enzymes [AP endodeoxyribonuclease, DNAase IV (5'----3'-exodeoxyribonuclease) and DNA polymerase-beta] prepared from rat liver and T4-phage DNA ligase. Since DNA ligase is also found in rat liver chromatin, all the activities used for the successful repair in vitro are thus present in the chromatin of a eukaryotic cell. Our results show, in particular, that the chromatin DNAase IV is capable of excising the AP site from the DNA strand nicked by the chromatin AP endodeoxyribonuclease. We did not try to combine all the enzymes, since competition between some of them might have prevented the repair; we have, for instance, shown that DNA ligase can seal the incision 5' to the AP site made by the AP endodeoxyribonuclease. Changes in chromatin structure during repair might perhaps prevent this competition when nuclear DNA is repaired in the living cell.
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Selected References
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- Crine P., Verly W. G. Determination of single-strand breaks in DNA using neutral sucrose gradients. Anal Biochem. 1976 Oct;75(2):583–595. doi: 10.1016/0003-2697(76)90113-5. [DOI] [PubMed] [Google Scholar]
- César R., Verly W. G. The apurinic/apyrimidinic endodeoxyribonuclease of rat-liver chromatin. Eur J Biochem. 1983 Jan 1;129(3):509–517. doi: 10.1111/j.1432-1033.1983.tb07077.x. [DOI] [PubMed] [Google Scholar]
- Goffin C., Verly W. G. Excision of apurinic sites from DNA with enzymes isolated from rat-liver chromatin. Eur J Biochem. 1982 Oct;127(3):619–623. doi: 10.1111/j.1432-1033.1982.tb06917.x. [DOI] [PubMed] [Google Scholar]
- Goffin C., Verly W. G. Interstrand DNA crosslinks due to AP (apurinic/apyrimidinic) sites. FEBS Lett. 1983 Sep 5;161(1):140–144. doi: 10.1016/0014-5793(83)80747-9. [DOI] [PubMed] [Google Scholar]
- Gossard F., Verly W. G. Properties of the main endonuclease specific for apurinic sites of Escherichia coli (endonuclease VI). Mechanism of apurinic site excision from DNA. Eur J Biochem. 1978 Jan 16;82(2):321–332. doi: 10.1111/j.1432-1033.1978.tb12026.x. [DOI] [PubMed] [Google Scholar]
- Lindahl T., Gally J. A., Edelman G. M. Deoxyribonuclease IV: a new exonuclease from mammalian tissues. Proc Natl Acad Sci U S A. 1969 Feb;62(2):597–603. doi: 10.1073/pnas.62.2.597. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miller M. R., Chinault D. N. The roles of DNA polymerases alpha, beta, and gamma in DNA repair synthesis induced in hamster and human cells by different DNA damaging agents. J Biol Chem. 1982 Sep 10;257(17):10204–10209. [PubMed] [Google Scholar]
- Mosbaugh D. W., Linn S. Characterization of the action of Escherichia coli DNA polymerase I at incisions produced by repair endodeoxyribonucleases. J Biol Chem. 1982 Jan 10;257(1):575–583. [PubMed] [Google Scholar]
- Mosbaugh D. W., Linn S. Excision repair and DNA synthesis with a combination of HeLa DNA polymerase beta and DNase V. J Biol Chem. 1983 Jan 10;258(1):108–118. [PubMed] [Google Scholar]
- Verly W. G., Gossard F., Crine P. In vitro repair of apurinic sites in DNA. Proc Natl Acad Sci U S A. 1974 Jun;71(6):2273–2275. doi: 10.1073/pnas.71.6.2273. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang T. S., Korn D. Reactivity of KB cell deoxyribonucleic acid polymerases alpha and beta with nicked and gapped deoxyribonucleic acid. Biochemistry. 1980 Apr 29;19(9):1782–1790. doi: 10.1021/bi00550a009. [DOI] [PubMed] [Google Scholar]