Abstract
A number of standard molecules are used for the molecular and histological characterization of lymphatic endothelial cells (LECs), including lymphatic vessel endothelial hyaluronan receptor 1 (LYVE1), Podoplanin (D2-40), VEGFR3, Prospero homeobox protein 1 (PROX1), and CD31. The number of molecules whose mutations cause lymphatic malformations or primary congenital lymphedema is considerable, but the majority of these diseases have not yet been characterized at the molecular level. Therefore, there is still considerable scope for molecular and functional studies of the lymphatic vasculature. Using RNASeq, we have previously characterized lymphatic endothelial cells (LECs) under normoxic and hypoxic conditions. We used this information to compare it with immunohistochemical data. We carried out some of the immunohistology ourselves, and systematically studied the Human Protein Atlas, a cell and tissue database based in Sweden. Here we describe molecules that are expressed at RNA and protein levels in LECs, hoping to stimulate future functional studies of these molecules.
Keywords: lymphatic endothelial cell, ANKRD37, CAV1, CAV2, CD59, CNN3, DYSF, KANK3, MARCKSL1, MMRN1, NXN, SPTAN1, SPTBN1
1. Introduction
The lymphatic vascular system was already known in ancient times, although its functions were misinterpreted. Venae albae or Ductus lactei were already known to Hippocrates of Kos (460–370 BC), Aristoteles (384–322 BC), and the doctors of the Alexandrian school (approx. 300 BC–600 AC) (cited from [1]). When Gaspare Aselli (re)discovered the lymphatics [2], he knew exactly what he had to look for. He was aware that the Venae albae were easy to find in the mesenteries of dogs, for example, but he was probably the first to establish a connection between these milky vessels and food intake. The anatomical representation of the lymphatic vascular system was especially advanced at Italian universities [3], although the function of the system was still very mysterious. One of the first to recognize the importance of directed fluid transport in the lymphatics was Olof Rudbeck [4]. Contrary to the prevailing doctrine, which postulated a lymph flow into the liver, he described the connection to the central venous system. He also recognized a valve system in lymphatics and the coagulability of the lymph.
We should be very humble when evaluating ancient knowledge, because one thing is certain: we are still far from fully understanding the functions of the lymphatic vascular system, although more and more functions are being discussed [5,6,7,8]. The complexity is immediately apparent when we visualize the heterogeneity of lymphatic endothelial cells (LECs) [9] and the long lists of molecules expressed in LECs [10,11], lymph collectors [12], or lymph nodes [13,14]. Development and behavior of LECs is critically regulated by the transcription factor PROX1 [15,16,17], and the histological characterization of human LECs is typically performed with antibodies against PROX1 and CD31 [18], the Vascular endothelial growth factor receptor-3 (VEGFR3, FLT4) [19], the Lymphatic vessel endothelial hyaluronic acid receptor 1 (LYVE1) [20], and the type-I integral membrane glycoprotein Podoplanin (PDPN) [21].
Congenital malformations of the blood vascular system are very common. Those of the lymphatic system are much rarer, mostly located in the head-neck region, and can be life threatening. Most of the lymphatic malformations are caused by somatic mutations in genes involved in the VEGFR3 signaling pathway [22,23,24,25]. However, most genetic causes of lymphatic malformations and primary lymphedema have not yet been discovered. This illustrates that there is still a very large number of molecules whose significance for the development and function of the lymphatic vessels is not yet known. We have previously used RNASeq to study human foreskin-derived LECs under normoxic and hypoxic conditions and defined 162 genes that are significantly regulated by hypoxia [10], as well as highly expressed genes that influence the composition of the extracellular matrix and may be involved in lymphedema-induced fibrosis [26]. Here, we went through the RNASeq list and studied the large number of highly expressed LEC genes. We compared RNA expression with protein expression by systematically studying the Human Protein Atlas [27] (https://www.proteinatlas.org/; accessed on 20 August 2024). In this way, we sought to define additional molecules that can be used for deeper characterization of lymphatic vessels and to define further functions of LECs.
2. Results and Discussion
We recently performed expression analyses of three well characterized human foreskin-derived LEC lines under normoxic and hypoxic conditions [10,26] and received a list of approx. 16,000 LEC-expressed genes. Only a very small number of these molecules have been studied in LECs thus far. We have tried to systematically match RNA expression with protein expression using the Human Protein Atlas [27]. According to the Human Protein Atlas, the tissues are normal tissues, though, of course, concomitant diseases of the mostly older donors cannot be ruled out. With the exception of dysferlin, which we studied in combination with the endothelial marker CD31, we relied on morphological criteria to identify lymphatics in tissue sections. We have concentrated on molecules whose function has not yet been investigated in LECs. The number of matches between RNA and protein expression was not very high, but there can be many technical reasons (fixation time of tissue, paraffine permeability of the antibodies, etc.) for this. The expression of the molecules we describe in the manuscript is not restricted to LECs. Some occur in BECs or in other cell types. However, it should be noted that the commonly used LEC markers also occur in various other cell types, and ultimately a selection of molecules will always be necessary to characterize a cell type.
One of the main functions of the lymphatics is regulation of fluid homeostasis. The fluid is mainly absorbed via the flexible microvalves of the initial lymphatic vessels. However, part of the fluid uptake also occurs by means of active transcytosis, which has also been observed for the uptake of chylomicrons by lacteals [28,29,30]. Very recently, the uptake of myofibroblast-derived microvesicles (MVs) was studied in human dermal blood vascular endothelial cells (BECs) and LECs [31]. The authors describe that MVs cross an LEC layer but not a BEC layer in vitro. For both endocytosis and transcytosis, the caveolin-dependent pathway is of utmost importance. High expression of caveolin 1 (CAV1) and CAV2 (Table 1) for endo- and transcytosis seems to be in line with the free passage of MVs through LECs, and antibodies against CAV1 and CAV2 clearly stain lymphatics and selected blood vessels (Figure 1 and Figure 2).
Table 1.
Gene_ID | Gene-Name | Chromos. | Start | End | Width | Strand | Gene_Bio-Type | HDLEC-5 | HDLEC-6 | HDLEC-7 | Hypox-5 | Hypox-6 | Hypox-7 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ENSG00000186352 | ANKRD37 | 4 | 1.85 × 108 | 1.85 × 108 | 4608 | + | protein_cod. | 93 | 117 | 124 | 312 | 549 | 650 |
ENSG00000105974 | CAV1 | 7 | 1.17 × 108 | 1.17 × 108 | 36,184 | + | protein_cod. | 28,254 | 22,816 | 40,041 | 41,886 | 29,070 | 44,229 |
ENSG00000105971 | CAV2 | 7 | 1.16 × 108 | 1.17 × 108 | 221,162 | + | protein_cod. | 5923 | 6362 | 8339 | 8258 | 7425 | 10,628 |
ENSG00000085063 | CD59 | 11 | 33,703,010 | 33,736,491 | 33,482 | − | protein_cod. | 25,997 | 30,542 | 33,420 | 25,878 | 36,425 | 34,222 |
ENSG00000117519 | CNN3 | 4 | 94,896,949 | 94,927,223 | 30,275 | − | protein_cod. | 16,690 | 24,868 | 11,454 | 14,357 | 20,711 | 8938 |
ENSG00000135636 | DYSF | 2 | 71,453,722 | 71,686,768 | 233,047 | + | protein_cod. | 2656 | 1698 | 4385 | 3354 | 2205 | 5193 |
ENSG00000186994 | KANK3 | 19 | 8,322,584 | 8,343,262 | 20,679 | − | protein_cod. | 2257 | 4008 | 2949 | 3946 | 4202 | 5177 |
ENSG00000175130 | MARCKSL1 | 1 | 32,333,839 | 32,336,233 | 2395 | − | protein_cod. | 8786 | 9698 | 8004 | 8408 | 7819 | 4811 |
ENSG00000138722 | MMRN1 | 4 | 89,879,532 | 89,954,629 | 75,098 | + | protein_cod. | 199,494 | 204,322 | 16,869 | 263,839 | 303,443 | 38,908 |
ENSG00000138119 | MYOF | 10 | 93,306,429 | 93,482,334 | 175,906 | − | protein_cod. | 12,506 | 4987 | 5959 | 11,865 | 2877 | 11,681 |
ENSG00000167693 | NXN | 17 | 799,310 | 979,776 | 180,467 | − | protein_cod. | 5647 | 7278 | 2263 | 4813 | 5743 | 2401 |
ENSG00000115155 | OTOF | 2 | 26,457,203 | 26,558,698 | 101,496 | − | protein_cod. | 1187 | 1088 | 464 | 499 | 109 | 146 |
ENSG00000197694 | SPTAN1 | 9 | 1.29 × 108 | 1.29 × 108 | 81,105 | + | protein_cod. | 10,798 | 8181 | 6610 | 8411 | 9524 | 8409 |
ENSG00000115306 | SPTBN1 | 2 | 54,456,317 | 54,671,446 | 215,130 | + | protein_cod. | 23,119 | 28,282 | 11,418 | 25,384 | 39,160 | 14,477 |
Three human dermal lymphatic endothelial cell lines (HDLEC-5, 6, and 7) were investigated under 21% pO2 as well as under 1% pO2 (Hypox-5, 6, and 7). RNASeq was performed by the NGS-Integrative Genomics Core Unit, UMG, Göttingen (details see: [10]. The number of reads is presented. The molecules shown here are not regulated by hypoxia with two exceptions: Otoferlin (OTOF), which is a moderately high expressed gene, is downregulated by hypoxia. OTOF belongs to the ferlin family of proteins, additionally including dysferlin (DYSF) and myoferlin (MYOF). ANKRD37 is a lowly expressed gene, which is upregulated by hypoxia.
Very active transcytosis by LECs is also reflected by the RNA expression the ferlin family members: myoferlin (MYOF; very high), dysferlin (DYSF; high), and otoferlin (OTOF; moderate) (Table 1). Ferlins regulate membrane fusion and fusion of vesicles to cell membranes e.g., for exocytosis or membrane regeneration [32]. Of the three ferlins, we observed clear immunostaining against DYSF (dystrophy-associated fer-1-like protein) in various organs (Figure 3) and performed immunodouble staining with CD31 in human foreskin (Figure 4). We observed DYSF in dermal lymphatics. Blood vessels were mostly negative, except for the subepithelial capillary plexus. We tested various OTOF antibodies but did not receive a positive result; and, in contrast to the high RNA expression, we found no immunopositivity for MYOF in the Human Protein Atlas. As already mentioned, this apparent discrepancy may be due to technical problems with antibody staining. Antibodies need to be improved and protocols refined. However, DYSF is clearly present in LECs at the RNA and protein levels, which is in line with high transcytotic activity.
Both the initial lymphatic vessels and the lymph collectors exhibit strong functional fluctuations in their diameter, and they have valves whose elasticity is of great importance for reliable valve closure. Spectrins have originally been identified as the major elastic component of erythrocytes, linking the actin cytoskeleton to the cell membrane. However, nonerythroid spectrins have also been identified [33,34,35]. Spectrins form tetrameric proteins of alpha and beta subunits. SPTAN1 (spectrin, alpha, nonerythrocytic 1) and SPTBN1 (spectrin, beta, nonerythrocytic 1) are highly expressed in LECs (Table 1) and they are well detectable at protein level in lymphatics of various organs (Figure 5 and Figure 6). Neuropathies related to malfunction of the two molecules have been observed, but lymphedema has not yet been described.
Among the genes most highly expressed in LECs is Multimerin 1 (MMRN1) (Table 1). Lymph contains fibrinogen and can coagulate [36], and we have previously pointed out that LECs are an important source for factor VIII (F8, antihemophilic globulin A) and its carrier protein von-Willebrand factor (VWF) [8]. MMRN1 is a specific coagulation factor V binding platelet protein with a role in hemostasis and coagulation, and accordingly it is highly expressed in megakaryocytes [37]. In addition, it is found with extremely high specificity in endothelial cells; despite this, a clear distinction between BECs and LECs has not been made [38]. However, it appears that LECs are clearly more strongly positive than BECs (https://www.proteinatlas.org/ENSG00000138722-MMRN1/single+cell+type; accessed on 5 November 2024). We found immunopositivity for MMRN1 in lymphatics of various organs (Figure 7). During lymphostasis, the accumulation of pro-coagulatory factors (F8, VWF, MMRN1) and the decrease in the anti-coagulatory and anti-inflammatory 5′-nucleotidase (CD73) of the LECs [39] can be important reasons for the increased tendency to thrombosis and inflammation.
MARCKS-like protein-1 (MARCKSL1 = MLP) has great similarity with the myristoylated, alanine-rich protein MARCKS [40,41], a substrate for protein kinase C. MARCKSL1 has mainly been studied in neural development and in cancer cell migration [42]. High MARCKSL1 expression has a strong prognostic value in lymph node-negative breast cancer patients [43]. Upon phosphorylation, MARCKSL1 induces actin bundling and inhibits cell migration [42]. We observed high RNA expression of MARCKSL1 in LECs (Table 1) and immune-positive lymphatics in various organs (Figure 8). The influence of MARCKSL1 on LEC stability and function has not yet been studied.
Another molecule associated with the actin cytoskeletal system is calponin 3 (CNN3). It consists of an acidic C terminus and a basic N terminus [44,45]. CNN3 regulates contractility of actomyosin-containing stress fibers of non-muscle cells [46]. Thereby, control of stress fiber contractility by CNN3 was found to be associated with mechanosensitive Yap/Taz (Yes-associated protein/transcriptional coactivator with PDZ binding motif) transcriptional activation [47]. We observed high RNA expression of CNN3 in LECs (Table 1) and immune-positive lymphatics in various organs (Figure 9), making LECs an attractive model for further studies on the function of CNN3. The importance of the Yap/Taz signaling in the Hippo pathway for lymphangiogenesis is well recognized [48,49].
The cytoskeleton of LECs appears to be very stable, and accordingly, the invasiveness of LECs is usually extremely low; the only exception being vanishing bone disease (Gorham-Stout disease, GHS) with approx. 350 cases being reported [50,51,52]. The ankyrin repeat domain protein 37 (ANKRD37) is not only associated with preeclampsia during pregnancy. Its knock-down enhances trophoblast invasiveness, migration, and regulation of key invasion proteins [53]. ANKRD37 is expressed at very low levels in LECs and is significantly upregulated by hypoxia (Table 1) [26]. It is a hypoxia-inducible factor-1 (HIF1) target gene [54]. Its expression in GHS has, to the best of our knowledge, not yet been studied. We observed immune-positivity for ANKRD37 in LECs (Figure 10). However, due to the large number of ANKRD family members expressed in LECs specificity of antibody staining might be problematic.
Another molecule involved in actin stress fiber formation and containing an ankyrin repeat domain is KANK3 (KN motif- and ankyrin repeat domain-containing protein 3) [55]. KANK3 is highly expressed in LECs (Table 1) and immune-positivity is seen in lymphatics of various organs (Figure 11). The four members of the KANK family regulate integrin-mediated adhesion, actomyosin contractility, and link focal adhesions to the cortical microtubule stabilization complex [56]. Specific expression of KANK3 in endothelial cells has been noted [56], but functional studies are lacking.
Lymph contains high amounts of immunoglobulin G (IgG) heavy chain [36]. Antigen-IgG complexes represent a starting point for the classical complement system, which can stimulate phagocytes, inflammation, and the cell-killing membrane attack complex (MAC) [57]. LECs express high amounts of CD59, also known as Protectin (Table 1), a glycoprotein functioning as a membrane-bound inhibitor of MAC [58]. Malfunctioning of CD59 causes hemolytic anemia with immune-mediated polyneuropathy [59]. The specific function in LECs has not been investigated yet. Immune-positivity is seen in lymphatics and blood vessels (Figure 12), suggesting an important immune-suppressive function in vessels. Strong expression of CD59 in colorectal cancer is associated with higher incidence of lymph node metastasis [55]. In ulcerative colitis, a chronic inflammatory disease of the colon, CD59 belongs to the complement components that have been shown to safeguard the intestinal barrier and reduce intestinal inflammation [60].
It was previously shown that the non-canonical WNT (Wingless-type MMTV integration site) signaling pathway is of great importance for the elongation of lymphatics during embryonic lymphangiogenesis [61,62]. Nucleoredoxin (NXN) is a 48 kDa protein and a redox-dependent negative regulator of the Wnt signaling pathway [63]. NXN mRNA is highly expressed in LECs (Table 1), and it can be detected in lymphatics of various organs by immunohistology (Figure 13). Similar to mutations in WNT5A [64] and other WNT signaling members, mutations in NXN cause Robinow syndrome [65], which is mainly characterized by dysmorphic facial features and short-limbed dwarfism. To our knowledge, morphology and function of the lymphatics have not yet been investigated in Robinow patients.
3. Materials and Methods
3.1. Cell Culture
We used three well characterized human dermal lymphatic endothelial cell lines (PromoCell, Heidelberg, Germany). Cells and culturing were described before [10,26].
3.2. RNA Sequencing
RNASeq of defined lymphatic endothelial cells was performed as described [10,26].
3.3. Immunofluorescence (IF)
IF was performed on human foreskin derived from operations performed at the University Medical Center Goettingen (UMG). Specimens were fixed in 4% paraformaldehyde for 1 h, embedded in tissue freeze medium, and sectioned at 12 µm. Studies were performed with the informed consent of the patients or their parents and were approved by the ethics committee of the UMG (application no. 18/1/18). Primary antibodies were mouse-anti-human CD31 (BD Pharmingen, Franklin Lakes, NJ, USA, dilution 1:50, Lot: 550389) and rabbit-anti-human dysferlin (Sigma, St. Louis, MO, USA, dilution 1:200, Lot: 19895). Secondary antibodies were Alexa 488-conjugated goat-anti-mouse IgG (H + L) (Invitrogen, Waltham, MA, USA, dilution 1:200, Lot: 2765658) and Alexa 594-conjugated goat-anti-rabbit IgG (H + L) (Invitrogen, dilution 1:200, Lot: 2506100). Nuclei were counterstained with Dapi (Invitrogen).
3.4. Immunohistochemistry
We compared our RNASeq expression data with protein expression by systematically studying the Human Protein Atlas [27] (https://www.proteinatlas.org/; accessed on 5 November 2024). All figures shown here can be found and further studied at variable magnification in this repository.
4. Conclusions
The exome of lymphatic endothelial cells is very extensive, as in other cell types. The correspondence with the protein expression that we have studied in the Human Protein Atlas is comparatively low. However, this can probably be attributed to simple technical reasons when studying paraffin-embedded human tissues. The selected images show preparations of both the body wall (skin, breast) and internal organs. This indicates that the selected molecules may be important in LECs of somatic and visceral origin. We found good agreement for molecules associated with the high transcytosis activity of LECs (caveolin, dysferlin). There was very good agreement for molecules that have important functions in the structure and regulation of the cytoskeleton. This may be due to the fact that the LECs of the initial lymphatic vessels have a unique morphology and function. This is expressed in the oak leaf-like morphology of the cells with the formation of specialized button-like junctions and microvalves, which are of essential importance for the directed lymph flow [66,67,68]. Accordingly, we found expression of molecules that mediate cellular elasticity (spectrins) and interact with actin microfilaments (ANKRD37, CNN3, KANK3, MARCKSL1). In terms of immune regulation, lymphatic vessels are a double-edged sword [8]. They are the main route for the emigration of leukocytes towards the lymph nodes. However, they can also have an immunosuppressive effect, which is reflected in the expression of CD59. The influence of LECs on coagulation, which has already been described several times, was confirmed in our investigations (multimerin1). The importance of the WNT signaling pathway for development and function of lymphatics still needs to be investigated in greater detail (NXN). In sum, we hope our studies can stimulate further studies on the complex morphology and functions of lymphatics.
Acknowledgments
We are grateful to Christina Zelent and Berti Manshausen for their expert technical assistance.
Abbreviations
ANKRD37—ankyrin repeat domain protein 37; BEC—Blood vascular endothelial cell; CAV1/2—Caveolin 1/2; CD59—CD59 glycoprotein aka Protectin; CNN3—Calponin 3; DYSF—Dysferlin; GHS—Gorham-Stout disease/syndrome; KANK3—KN motif- and ankyrin repeat domain-containing protein 3; LEC—Lymphatic endothelial cell; MAC—Membrane attack complex; MARCKSL1—MARCKS-like protein-1; MMRN1—Multimerin 1; MYOF—Myoferlin; NXN—Nucleoredoxin; OTOF—Otoferlin; SPTAN1—Spectrin, alpha, nonerythrocytic 1; SPTBN1—Spectrin, beta, nonerythrocytic 1; WNT—Wingless-type MMTV integration site.
Author Contributions
J.B.: investigation, data curation; J.W.: conceptualization, data curation, writing—review and editing. All authors have read and agreed to the published version of the manuscript.
Institutional Review Board Statement
The study was conducted in accordance with the Declaration of Helsinki, and approved by the Ethics Committee of the University Medical Center Goettingen (No.18/1/18).
Informed Consent Statement
Informed consent was obtained from all subjects involved in the study.
Data Availability Statement
All data are included in the manuscript. Additional immunohistochemical data are found at: The Human Protein Atlas (https://www.proteinatlas.org/; accessed on 5 November 2024).
Conflicts of Interest
The authors declare that this study received funding from Verein zur Förderung der Lymphologie e.V., 79856 Hinterzarten, Germany. The funder was not involved in the study design, collection, analysis, interpretation of data, the writing of this article or the decision to submit it for publication.
Funding Statement
The studies were supported by the Verein zur Förderung der Lymphologie e.V., 79856 Hinterzarten, Germany.
Footnotes
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
All data are included in the manuscript. Additional immunohistochemical data are found at: The Human Protein Atlas (https://www.proteinatlas.org/; accessed on 5 November 2024).