REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
Raw (FASTQ) reads	This study	E.N.A. PRJEB69227
Human reference genome NCBI build 38, hg38	Genome Reference Consortium	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001405.26/
20 genomes of ancient Norwegians	Margaryan et al.21	E.N.A. PRJEB37976
3 genomes of ancient Norwegians	Gopalakrishnan et al.22	E.N.A. PRJEB53899
Human genome regions of low accessibility	1000 Genomes Project	https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=tgpPhase3Accessibility
Human genome phased genotypes (release 20201028_3202_phased)	1000 Genomes Project	https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/working/20201028_3202_phased/
ISOGG 2019 Y-DNA Haplogroup Tree	International Society of Genetic Geneaology27	https://isogg.org/tree/
PhyloTree build 17	Van Oven and Kayser15	https://www.phylotree.org/tree/index.htm
Software and algorithms
PALEOMIX v. 1.2.13.4	Schubert et al.28	https://github.com/MikkelSchubert/paleomix/
AdapterRemoval v2.3.1	Schubert et al.29	https://github.com/MikkelSchubert/adapterremoval
BWA v. 0.7.10	Lu and Durbin30	https://github.com/lh3/bwa
MapDamage v. 2.0.9	Jónsson et al.31	https://ginolhac.github.io/mapDamage/
PicardTools v. 2.21.3	Broad Institute	https://broadinstitute.github.io/picard
BEDtools v. 2.29.2	Quinlan and Hall32	https://bedtools.readthedocs.io/en/latest/
ANGSD v.0.935	Korneliussen et al.33	https://www.popgen.dk/angsd/index.php/ANGSD
haploGrouper	Jagadeesan et al.34	https://gitlab.com/bio_anth_decode/haploGrouper
HIrisPlex	Department of Genetic Identification of Erasmus MC	https://hirisplex.erasmusmc.nl/
GLIMPSE	Rubinacci et al.35	https://odelaneau.github.io/GLIMPSE/
Smartpca (eigensoft)	Patterson et al.36	https://github.com/chrchang/eigensoft/
MALT v. 0.4.1	Vågene et al.37	https://software-ab.cs.uni-tuebingen.de/download/malt/
HOPS	Hübler et al.38	https://github.com/rhuebler/HOPS
MEGAN6	Huson et al.39	https://software-ab.cs.uni-tuebingen.de/download/megan6/