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. 2024 Nov 22;110:361–383. doi: 10.3897/mycokeys.110.134154

Unveiling two new species of Trichoderma (Hypocreales, Hypocreaceae) that cause green mold disease on Strophariarugosoannulata from Guizhou Province, China

Entaj Tarafder 1,2, Zhang Wenjun 3,2, Samantha C Karunarathna 4, Abdallah M Elgorban 5, Man Huilian 3,2, Wu Nan 6, Xiangyu Zeng 3, Wang Yong 3, Feng-Hua Tian 3,2,
PMCID: PMC11607586  PMID: 39619667

Abstract

Strophariarugosoannulata is an important edible mushroom in China, but green mold disease has caused significant production and economic losses. In this study, two new pathogens Trichodermastrophariensis and T.viridistromatis were identified as the causal agents of this disease. During October-November 2023, six strains of the fungal pathogen were isolated from infected fruiting bodies of S.rugosoannulata and identified based on morphological characteristics and molecular phylogenetic analyses of internal transcribed spacer (nrITS), the second largest RNA polymerase II subunit (rpb2) and the partial translation elongation factor 1-alpha (tef1-α) region. The representative isolates of the pathogenic green mold Trichoderma species were used to perform a pathogenicity test with spore suspensions, resulting in symptoms similar to those observed in the cultivated field. The same pathogens were successfully re-isolated, thereby fulfilling Koch’s postulates. Detailed morphological descriptions, illustrations, culture characteristics, and comparisons with morphologically similar and closely related species are provided.

Key words: Ascomycetes, novel taxa, pathogen, phylogeny, taxonomy

Introduction

Strophariarugosoannulata (Wine-cap mushroom), a renowned edible mushroom, also known as Daqiugaigu in Chinese, has been widely cultivated in Poland, Germany, Russia and the United States (Huang et al. 2023). China imported a strain of S.rugosoannulata from Poland in the 1980s and began widespread cultivation in the 1990s (Yan et al. 2020). In recent years, S.rugosoannulata has been rapidly promoted and widely cultivated throughout China (Gu et al. 2024). With the increasing scale of cultivation, the annual yield of S.rugosoannulata in China has exceeded 210,000 tons per year (Huang et al. 2023). However, the emergence of various diseases during the cultivation of S.rugosoannulata has driven researchers to intensify their efforts to optimize its growth conditions. Our investigation observed green mold disease on the soil surface and fruiting bodies of S.rugosoannulata from three different localities. This disease incidence can lead to mushroom rot and a decline in yield and quality. The dedication of researchers to addressing this issue is a reassuring sign for the future of S.rugosoannulata cultivation.

Green mold disease is a major prevalent disease that frequently arises during mushroom development and is characterized by green, villiform mycelia on the surface (Li et al. 2013). Trichoderma Pers. (Hypocreales, Ascomycota) is a saprobic fungus found in soil, healthy plants, wood, and other fungi and plays a crucial role as the causative agent of green mold disease. Trichoderma species are widely used to combat fungal pathogens (Hasan et al. 2012; Liu et al. 2012; Li et al. 2013; Abo-Elyousr et al. 2014; Poveda et al. 2019), produce antibiotics, enzymes, and biofuel (Degenkolb et al. 2008; Jun et al. 2011; Wijayawardene et al. 2022). Additionally, Trichoderma species contribute to the bioremediation of xenobiotic compounds in water and soil (Katayama and Matsumura 1993; Harman et al. 2004; Ezzi and Lynch 2005). Currently, Trichoderma comprises more than 500 species globally, based on the literature search (Jaklitsch 2009; Jaklitsch and Voglmayr 2015; Jambhulkar et al. 2024), legitimate names in the Mycobank (https://www.mycobank.org.) and in the Species Fungorum database (www.speciesfungorum.org; accessed on 23 October 2024).

Trichoderma has two types of species with differing ascospore colours, namely hyaline and green ascospores. Chaverri and Samuels (2004) pioneered comprehensive research on green-spored Trichoderma species, providing foundational insight into their taxonomy and systematics. Subsequently, Jaklitsch and Voglmayr (2015) proposed a comprehensive classification primarily based on molecular phylogenetic analyses rather than the color of ascospores, dividing them into six subclades: Ceramicum, Chlorosporum, Harzianum, Helium, Spinulosum, and Strictipile. However, other researchers have not recognized this classification, largely due to the inconsistencies between molecular sequence data and morphological characteristics, as highlighted by Chen and Zhuang (2017). Bustamante et al. (2021) used multi-locus phylogenetic analyses alongside four DNA-based approaches to accurately delimit species within the Trichoderma Harzianum lineage, including most green-spored species.

The present study was conducted based on the pathogen of the green mold disease, aiming to characterize and identify the isolates. Six isolates were isolated from soil samples and fruiting bodies of S.rugosoannulata cultivated fields in three different regions of Guizhou Province, China. The study described two new species and compared their morphological characteristics among closely related species. A combined dataset of ITS, rpb2, and tef1-α was used for the thorough phylogenetic analyses, ensuring the reliability of the results.

Materials and methods

Pathogen collection, isolation, and maintenance

Infected fruiting bodies of S.rugosoannulata were collected from mushroom-cultivated fields at Baiyun and Shuicheng counties (23°4'23.6352"N, 120°37'39.7812"E and 24°55'39.936"N, 121°11'30.264"E), Guizhou Province, China in October-November 2023. Field photographs of the fresh specimens were taken with a Canon EOS 1200D (Canon, Japan) or Sony DSC-W830 (Sony, Japan) camera. The specimens were packed in aluminium foil and transferred to the Plant Pathology Laboratory at Guizhou University for isolation. Fungal pathogens on infected fruiting bodies were isolated using the spread plate and tissue isolation method following Wang et al. (2019). Purified cultures were incubated on potato dextrose agar (PDA), malt extract agar (MEA), and synthetic low nutrient agar (SNA) plates at 25, 30, and 35 °C. The holotype specimen was deposited in the Herbarium of the Department of Plant Pathology, Agricultural College, Guizhou University (HGUP). All single ex-type strains were deposited in the Culture Collection of the Guizhou University, China (GUCC) Department of Plant Pathology at Agriculture College and maintained in 25% (v/v) glycerol at –80 °C for long-term preservation (Zeng et al. 2022). Index Fungorum numbers were registered for the new taxa (https://www.indexfungorum.org/names/Names.asp).

Pathogenicity assays

A pathogenicity test was conducted by inoculating fungal mycelial blocks and spore suspensions from six strains isolated from Baiyun, Shuicheng, and Anshun counties onto the soil surface and fruiting bodies of S.rugosoannulata, following the updated protocol of Tian et al. (2017). All strains were incubated at 25 °C for 10 days. Control checks (CK) included PDA blocks and distilled water, replacing the mycelial blocks and spore suspensions. Photographs of the inoculated soils were taken after one, seven, and 10 days to monitor the development of any green mycelia. After the 10-day incubation, fungal pathogens were re-examined and re-isolated from the diseased areas to fulfill Koch’s postulates, ensuring accurate identification of pathogenicity (Zhang et al. 2015; Xie et al. 2024). The experiment was repeated three times to validate the results and account for variability.

Morphological studies

Micro-morphological observations were performed from culture photo­graphs of fresh stromata, which were taken using an ultra-depth field stereomicroscope (digital microscope system Keyence VHX-7000) to illustrate the macrostructures. Sections were made using a stereomicroscope (Leica DM2500) and mounted in water or a rehydrated 5% KOH solution. The cultures were incubated at 25 °C in darkness (Põldmaa 2011; Wei et al. 2024). Approximately 30 morphological measurements of new species were made for each feature using the ZEN 3.0 (blue edition) (Jena, Germany) software (Zeiss Scope 5 with color camera AxioCam 208) with differential interference contrast (DIC) optics to observe the morphological characteristics (Jaklitsch and Voglmayr 2015; Fu et al. 2024; Zeng et al. 2024). Colony characteristics, i.e., color and texture on PDA (Potato dextrose agar; 200 g potatoes, 20 g dextrose, 20 g agar per L), MEA (malt extract agar; 30 g malt extract, 5 g mycological peptone, 15 g agar per L) and synthetic low nutrient agar (SNA) plates at 25, 30 and 35 °C were observed and noted over 14 days.

Molecular studies

DNA extraction, Polymerase Chain Reaction (PCR) and sequencing

The genomic DNA was extracted from the colony of the isolates cultured at 25 °C, PDA for seven days using a CwBiotech Plant Genomic DNA Kit (Changping, Beijing, China) following the manufacturer’s protocol.

The internal transcribed spacer (nrITS), the second largest RNA polymerase II subunit (rpb2) and the partial translation elongation factor 1-alpha (tef1-α) regions were amplified using the primer pairs ITS5/ITS4, EF1-728F/TEF1LLErev, and fRPB2-5F/fRPB2-7cR, respectively (White et al. 1990; Carbone and Kohn 1999; Liu et al. 1999; Jaklitsch et al. 2005). A 25 mL reaction mixture containing 1.6 mL dNTP mix (2.5 mM/mL), 0.2 mL Taq polymerase (5 U/mL), 2 mL polymerase buffer (10 /mL), 1 ml forward and reverse primers (10 mM/mL), and 1 mL DNA template was used for PCR experiments. Amplifications were carried out in a T100TM Thermal Cycler (BIO-RAD), which was configured for an initial denaturation at 95 °C for 3 minutes, followed by 34 cycles of 1 minute at 95 °C, 30 seconds at 55 °C, 1-minute extension at 72 °C, and a final extension at 72 °C for 10 minutes. Sangon Biotech (Shanghai) Co., Ltd. sequenced PCR products using the same PCR primers used in amplification operations. The newly generated sequences were checked with BioEdit v.7.2.5 (Hall 1999) and deposited in the NCBI GenBank nucleotide database for future reference.

The amplified sequences were subjected to BLASTn searches in the GenBank nucleotide database for comparison. Subsequently, closely related sequences of the taxa exhibiting zero E-values were retrieved from the database to generate the dataset. Besides, the sequences used by earlier studies on Trichoderma (Zeng et al. 2022) were also obtained from the database to prepare the final dataset (Table 1).

Table 1.

Names, strain numbers, locations, and corresponding GenBank accession numbers of the taxa used in the phylogenetic analysis.

Species Strain Geographic origin GenBank Accession Numbers
ITS rpb2 tef1-α
T.achlamydosporum YMF 1.06226 China MN977791 MT052180 MT070156
T.aerugineum CBS 120541 T Austria FJ860720 FJ860516 FJ860608
T.afarasin DIS 314F Cameroon FJ442259 FJ442778 FJ463400
T.afroharzianum CBS 466.94 Netherlands KP009262 KP009150 KP008851
T.aggregatum HMAS 248863 China KY687946 KY688001 KY688062
T.aggressivum CBS 100525 United Kingdom - AF545541 AF534614
T.alni CBS 120633 T United Kingdom EU518651 EU498349 EU498312
T.alpinum HMAS 248821 T China KY687906 KY687958 KY688012
T.amazonicum IB 95 Peru - HM142368 HM142377
T.anaharzianum YMF 1.00383 China MH113931 MH158995 MH183182
T.asiaticum YMF 1.00352 China MH113930 MH158994 MH183183
T.atrobrunneum S3 Italy - KJ665241 KJ665376
T.atrogelatinosum CBS 237.63 T New Zealand MH858272 KJ842201 KJ871083
T.attinorum LESF 236 USA - KT278971 KT279039
T.aureoviride CPK 2848 Germany FJ860733 FJ860523 FJ860615
T.azevedoi CEN1422 T Brazil MK714902 MK696821 MK696660
T.bannaense HMAS 248840 T China KY687923 KY687979 KY688037
T.breve HMAS 248844 T China KY687927 KY687983 KY688045
T.brevicrassum HMAS 248871 T China KY687954 KY688008 KY688064
T.britannicum CBS 253.62 T United Kingdom MH858149 KF134787 KF134796
T.brunneoviride CBS 121130 Germany EU518659 EU498357 EU498316
T.byssinum HMAS 248838 T China KY687921 KY687977 KY688035
T.catoptron GJS 02-76 T Sri Lanka AY737766 AY391900 AY391963
T.ceraceum GJS 95-159 T North Carolina AF275332 AF545508 AF534603
T.ceramicum CBS 114576 T Austria FJ860743 FJ860531 FJ860628
T.ceratophylli YMF 1.04621 China MK327581 MK327580 MK327579
T.cerinum S357 France - KF134788 KF134797
T.chlamydosporicum HMAS 248850 China KY687933 KY687989 KY688052
T.chlorosporum GJS 88-33 T USA - AY391903 AY391966
T.christiani CBS 132572 T Spain - KJ665244 KJ665439
T.chromospermum HMAS 252535 China KF923304 KF923315 KF923292
T.cinnamomeum GJS 97-237 USA AY737759 AY391920 AY391979
T.compactum CBS 121218 T China - KF134789 KF134798
T.concentricum HMAS 248833 T China KY687915 KY687971 KY688027
T.corneum GJS 97-82 ET Thailand - KJ665252 KJ665455
T.costaricense PC 21 T Costa Rica AY737754 AY391921 AY391980
T.cremeoides S112 T Italy - KJ665253 KJ665456
T.cremeum GJS 91-125 T USA AY737760 AF545511 AF534598
T.cuneisporum GJS 91-93 T USA AY737763 AF545512 AF534600
T.dacrymycellum WU 29044 Germany FJ860749 FJ860533 FJ860633
T.danicum CBS 121273 T Denmark FJ860750 FJ860534 FJ860634
T.epimyces CBS 120534 T Austria EU518663 EU498360 EU498320
T.estonicum GJS 96-129 T Estonia AY737767 AF545514 AF534604
T.ganodermatis HMAS 248856 China KY687939 KY687995 KY688060
T.gelatinosum GJS 88-17 France AY737775 AF545516 AF534579
T.gliocladium CBS 130009 T Italy MH865622 KJ665271 KJ665502
T.guizhouense S278 Croatia - KF134791 KF134799
T.hainanense HMAS 248837 T China KY687920 KY687976 KY688033
T.harzianum CBS 226.95 T Austria AY605713 AF545549 AF534621
T.hausknechtii CBS 133493 T France - KJ665276 KJ665515
T.helicolixii CBS 133499 T Greece - KJ665278 KJ665517
T.helicum DAOM 230021 Austria - DQ087239 KJ871125
T.hirsutum HMAS 248834 T China KY687916 KY687972 KY688029
T.hunanense HMAS 248841 T China KY687924 KY687980 KY688039
T.hymenopellicola GUCC202008 China MZ330754 ON088663 ON102007
T.hymenopellicola GUCC202009 China MZ330755 ON088664 ON102008
T.hymenopellicola GUCC202010 China MZ330756 ON088661 ON102005
T.hymenopellicola GUCCTB626 China ON074580 ON088662 ON102006
T.hymenopellicola GUCCTB625 China ON074583 - ON102011
T.inaequilaterale YMF 1.06203 China MN977795 MT052186 MT070152
T.ingratum HMAS 248822 T China KY687917 KY687973 KY688018
T.inhamatum CBS 273.78 T Colombia - FJ442725 AF348099
T.italicum CBS 132567 T Italy - KJ665282 KJ665525
T.jaklitschii CP61-2 T Peru - MW480149 MW480140
T.lentiforme DIS 94D Peru - FJ442749 FJ463379
T.lentinulae CGMCC 3.19847 T China - MN605867 MN605878
T.liberatum HMAS 248831 T China KY687913 KY687969 KY688025
T.linzhiense HMAS 248846 T China KY687929 KY687985 KY688047
T.lixii CBS 110080 T USA AF443920 KJ665290 FJ716622
T.longibrachiatum CBS 816.68 T Austria Z31019 DQ087242 EU401591
T.longifialidicum LESF 552 USA - KT278955 KT279020
T.longipile DAOM 177227 T Austria AY865630 AF545550 AF534622
T.longisporum HMAS 248843 China KY687926 KY687982 KY688043
T.lycogaloides WU 32096 T French Guiana - KF134792 KF134800
T.parepimyces CBS 122769 T Austria FJ860800 FJ860562 FJ860664
T.parestonicum CBS 120636 T Austria FJ860803 FJ860565 FJ860667
T.peberdyi CEN1426 T Brazil MK714906 MK696825 MK696664
T.peruvianum CP15-2 T Peru - MW480153 MW480145
T.perviride HMAS 273786 T China - KX026962 KX026954
T.phyllostachydis CBS 114071 T Austria FJ860809 FJ860570 FJ860673
T.pinicola SFC20130926-S233 T South Korea MH050354 MH025993 MH025981
T.pleuroti CBS 124387 T USA - HM142372 HM142382
T.pleuroticola CBS 124383 T USA - HM142371 HM142381
T.polypori HMAS 248855 T China KY687938 KY687994 KY688058
T.priscilae CBS 131487 T Austria - KJ665333 KJ665691
T.propepolypori YMF 1.06224 China MN977789 MT052181 MT070158
T.pseudoasiaticum YMF 1.06200 T China MN977792 MT052183 MT070155
T.pseudocandidum PC 59 T Costa Rica AY737757 AY391899 AY737742
T.pseudodensum HMAS 248828 T China KY687910 KY687967 KY688023
T.pseudogelatinosum CNU N309 T South Korea - HM920173 HM920202
T.purpureum HMAS 273787 T China - KX026961 KX026953
T.pyramidale CBS 135574 T Italy - KJ665334 KJ665699
T.rifaii DIS 337F ET Panama - FJ442720 FJ463321
T.rosulatum HMAS 252548 China KF729995 KF730005 KF729984
T.rufobrunneum HMAS 266614 T China KF729998 KF730010 KF729989
T.rugulosum SFC20180301-1 T South Korea MH050353 MH025986 MH025984
T.shennongjianum HMAS 245009 China - KT735259 KT735253
T.silvae-virgineae CBS 120922 Austria - FJ860587 FJ860696
T.simile YMF 1.06201 China MN977793 MT052184 MT070154
T.simmonsii S7 Italy - KJ665337 KJ665719
T.simplex HMAS 248842 T China KY687925 KY687981 KY688041
T.sinuosum CPK 1595 Austria FJ860838 FJ179619 FJ860697
T.solum HMAS 248848 T China KY687931 KY687987 KY688050
T.spinulosum CBS 311.50 T Austria FJ860844 FJ860591 FJ860701
T.spirale DAOM 183974 T Thailand EU280068 AF545553 EU280049
T.stipitatum HMAS 266612 China KF730002 KF730011 KF729990
T.stramineum GJS 02-84 T Sri Lanka AY737765 AY391945 AY391999
T.strictipile CPK 1601 Austria - FJ860594 FJ860704
T.strophariensis GUCC TB1117 T China PP920011 PP954941 PP954947
T.strophariensis GUCC TB1118 China PP920012 PP954942 PP954948
T.strophariensis GUCC TB1119 China PP920013 PP954943 PP954949
T.subazureum YMF 1.06207 China MN977799 MT052190 MT070148
T.subuliforme YMF 1.06204 China MN977796 MT052187 MT070151
T.sulawesense GJS 85-228 USA - AY391954 AY392002
T.surrotundum GJS 88-73 T USA AY737769 AF545540 AF534594
T.tawa GJS 97-174 T Thailand AY737756 AY391956 AY392004
T.tenue HMAS 273785 T China - KX026960 KX026952
T.thailandicum GJS 97-61 T Thailand AY737772 AY391957 AY392005
T.thelephoricola CBS 120925 Austria FJ860858 FJ860600 FJ860711
T.tibetense HMAS 245010 China - KT735261 KT735254
T.tomentosum CBS 120637 Austria - FJ860532 FJ860629
T.tropicosinense HMAS 252546 China KF923302 KF923313 KF923286
T.undatipile HMAS 248854 China KY687937 KY687993 KY688056
T.velutinum CPK 298 T Nepal - KF134794 KJ665769
T.vermifimicola CGMCC 3.19694 T China MN594473 MN605871 MN605882
T.virens DAOM 167652 T USA EU330955 AF545547 AF534619
T.virescentiflavum PC 278 Costa Rica AY737768 AY391959 AY392007
T.viridistromatis GUCC TB1120 T China PP922277 PP954944 PP954950
T.viridistromatis GUCC TB1121 China PP926290 PP954945 PP954951
T.viridistromatis GUCC TB1122 China PP922285 PP954946 PP954952
T.xixiacum CGMCC 3.19697 T China MN594476 MN605874 MN605885
T.zayuense HMAS 248835 T China KY687918 KY687974 KY688031
T.zelobreve CGMCC 3.19695 T China MN594474 MN605872 MN605883
T.zeloharzianum YMF 1.00268 China MH113932 MH158996 MH183181

Note: Newly sequenced strains are shown in bold. T denotes type cultures.

Dataset representation

Sequences of the closely related taxa with zero E-value were searched from the BLASTn analyses in the NCBI GenBank nucleotide database. A preliminary BLAST search with the newly amplified sequences of the collected specimens showed the highest sequence similarity with the members of the Trichoderma Pers. Hence, a dataset was prepared based on the highest-scored hits of the BLAST search plus the datasets used in the earlier studies on Trichoderma (Zeng et al. 2022).

Sequence alignment and phylogenetic analyses

The newly generated reverse and forward sequences were reassembled manually using BioEdit version 7.0.5.3 (Hall 1999) and were aligned with MAFFT v.7.427 (Katoh et al. 2019) in an online platform (https://www.ebi.ac.uk/Tools/msa/mafft/). The aligned sequences were imported to MEGA v.7.0 (Kumar et al. 2016) for manual improvement and trimming of both ends.

A quick phylogenetic analyses of DNA fragments (ITS, rpb2 and tef1-α) from 128 strains were performed with alignments and associated data matrices, including six isolates in this study (GUCC TB1117, GUCC TB1118, GUCC TB1119, GUCC TB1120, GUCC TB1121 and GUCC TB1122) and 122 reference strains (Table 1) by using offline software ‘One-click Fungal Phylogenetic Tool’ (OFPT-https://ofpt.guhongxin.com) following its default protocol (Zeng et al. 2023). The final Maximum likelihood analysis was performed with RAxML-HPC2 v. 8.2.12 (Stamatakis 2014) on the CIPRES Science Gateway platform using the GTR+I+G model with 1,000 bootstrap replicates and Bayesian analyses were conducted with MrBayes v.3.2.2 (Ronquist et al. 2012) using MCMC methods (Geyer 1991) under a GTR+I+G model. Markov chains were run for 2 × 106 generations, saving a tree every 100th generation with all the remaining parameters set to default. Bayesian analyses reached a standard deviation of split frequency of 0.0048 at the end of the specified number of generations. For both analyses, the initial 25% of trees recovered (10,000 trees) were excluded as the burn-in, while the remaining 30,002 trees were utilized to estimate the posterior probabilities for the group. ML bootstrap values (MLBS) ≥ 70% and Bayesian posterior probabilities (PP) values ≥ 0.95 are displayed in the phylogenetic tree. The resulting trees were visualized in FigTree v1.4.3 (Rambaut 2016).

Results

Pathogenicity tests

Both soil inoculating groups of covering mycelial blocks and soil mixed with spore suspension of isolates GUCC TB1117 and GUCC TB1120 exhibited similar symptoms of green mold disease in the field after seven days (Fig. 1g), while the control group did not have (Fig. 1d). The green mycelia can be observed on the surface of the mushroom tray after 3–5 days and spread fast, covering the whole surface of the substrate and turning green within 10 days (Fig. 1e, f). The rate of isolates GUCC TB1117 and GUCC TB1120 infecting mushroom tray is about 50%, similar to its incidence in the field. The same fungal pathogen had been observed and re-isolated from these symptoms, which fulfills Koch’s postulates (Fig. 1).

Figure 1.

Figure 1.

Field symptoms of green mold disease on Strophariarugosoannulata and pathogenicity tests of isolates GUCC TB1117 and GUCC TB1120 with spore suspension a healthy fruiting bodies of S.rugosoannulatab field symptoms of green mold disease on S.rugosoannulatac large stroma of the pathogen T.strophariensis (GUCC TB1117) d control, no disease after seven days of inoculation with distilled water e–g pathogenicity tests after spraying with 0.5 mL spore suspension (1 × 106 conidia mL–1) e, f hyphal blocks and pathogen stroma (F = yellow arrow) appear on the surface of the soil after five days of inoculation g whole rotten fruiting bodies after seven days of inoculation h, i rotten fruiting bodies of S.rugosoannulata in the field with T.viridistromatis (GUCC TB1120) j Aggregated stroma of the pathogen T.viridistromatis (GUCC TB1120) with typical green symptoms k, l yellow arrows showing pathogen hyphal blocks and stroma appear on the surface of the soil after five days of inoculation. Scale bars: 20 mm (a–e); 10 mm (f); 20 mm (g); 10 mm (h); 20 mm (I, j); 10 mm (k, l).

Phylogenetic analyses

The phylogenetic analyses were conducted using a combined dataset of nrITS, rpb2, and tef1-α sequences. A total of 128 sequences were aligned, and this resulted in a dataset consisting of 2934 nucleotides; after the ends of the individual alignments were trimmed, the size of the aligned dataset was as nrITS 610 bp, rpb2 was 1080 bp, and tef1-α was 1244 bp respectively. The best-fit substitution model of each gene is ITS (TIM2+F+R4), rpb2 (TIM3e+I+G4) and tef1-α (TIM+F+R4). The RAxML analysis of the combined dataset yielded a best-scoring tree with a final ML optimization likelihood value of –37957.575772. Estimated base frequencies are as follows: A = 0.233134, C = 0.285526, G = 0.253003, and T = 0.228336; substitution rates AC = 1.134637, AG = 4.477934, AT = 1.149518, CG = 1.048786, CT = 6.335323, and GT = 1.000000; proportion of invariable sites I = 0.544721; and gamma distribution shape parameter a = 0.951765. The Bayesian analysis ran 29,64000 generations before the average standard deviation for split frequencies reached 0.00998. The analysis generated 59,282 trees, from which 44,462 were sampled after burn-in, and the 99% credible set contains 35,309 trees. Our new strains belong to a distinct clade that is genetically distant from T.britannicum, T.aerugineum, T.danicum, and T.spinulosum and is divided into four subclades represented by our newly generated strains (Fig. 2). DNA base pair differences also supported the phylogenetic placements of these novel taxa (Table 2).

Figure 2.

Figure 2.

A phylogram was constructed using ML analysis, utilizing a combined ITS, rpb2, and tef1-α sequences dataset. The green-spored T.longibrachiatum (CBS81668) was used as the outgroup taxon following Zeng et al. (2022). The tree with the highest score according to RAxML, with a final probability value of -InL = 37957.575772, is displayed. Maximum Likelihood (ML) values equal to or greater than 70% and Bayesian Inference (BI) values equal to or greater than 0.90 are given above the nodes (ML values on the left side of ‘/’ in regular font and BI values on right side of ‘/’ in italics). Type strain sequences are indicated in red bold, while newly generated sequences are shown in black bold. Strain numbers for the sequences are shown in the tree following the taxon name. ‘T’ denotes ex-holotype strains.

Table 2.

The DNA base differences of our isolates and related taxa in different loci.

Species Strain number ITS (1–610 bp) rpb2 (611–1690 bp) tef1-α (1691-2934 bp)
Trichodermastrophariensis GUCC24-0002 0 0 0
Trichodermastrophariensis GUCC24-0003 0 0 0
Trichodermastrophariensis GUCC24-0004 0 0 0
Trichodermabritannicum CBS 25362 28 (gaps: 4) 48 (gap: 0) 64 (gap: 25)
Trichodermaaerugineum CBS 120541 16 (gaps: 9) 78 (gap: 0) 67 (gap: 11)
Trichodermadanicum CBS 121273 25 (gaps: 8) 99 (gaps: 0) 105 (gaps: 3)
Trichodermaspinulosum CBS 31150 21 (gaps: 8) 82 (gaps: 0) 108 (gap: 7)
Trichodermaviridistromatis GUCC24-0005 0 0 0
Trichodermaviridistromatis GUCC24-0006 0 0 0
Trichodermaviridistromatis GUCC24-0007 0 0 0
Trichodermabritannicum CBS 25362 17 (gaps: 5) 20 (gap: 0) 55 (gaps: 21)
Trichodermaaerugineum CBS 120541 10 (gaps:10) 79 (gap: 0) 78 (gaps: 11)
Trichodermadanicum CBS 121273 25 (gaps: 8) 95 (gap: 0) 113 (gap: 0)
Trichodermaspinulosum CBS 31150 22 (gaps: 8) 73 (gaps: 0) 109 (gaps: 7)

Taxonomy

. Trichoderma strophariensis

E. Tarafder & F.H. Tian sp. nov.

22D20AFB-BC41-5495-B40A-EB53EFFBE5CB

Fungal Names: FN 902311

Figs 3 , 4

Figure 3.

Figure 3.

Morphology of Trichodermastrophariensis (HGUP 24-0001, GUCC 24-0002) a, b disease in the field habitat c fresh stromata on natural habitat d dry stromata e ostiolar dots on stromata surface f cortical and subcortical tissues in section g ascomatal tissue in section h asci with ascospores i ascospores. Scale bars: 10 mm (a, b); 20 mm (c); 100 mm (d–f); 50 μm (g); 20 μm (h, i).

Figure 4.

Figure 4.

a cultures on MEA (five days) b cultures on PDA (five days) c cultures on SNA (4 days) d conidiophores e phialides f conidia. Scale bars: 10 μm (d, e); 5 μm (f).

Diagnosis.

Trichodermastrophariensis differs from T.britannicum by smaller stromata (0.9–2.2 × 0.8–2 mm) with dark green surface, margin free; surface finely rugose or tubercular, brownish between black ascomata; ostiolar dots absent, inconspicuous or convex to distinctly papillate measuring (27–)35–64(–90) mm diam. Additionally, it is easily distinguished from T.viridistromatis by its relatively larger ascospores (8.4–16.9 × 5.5–8.1 µm) and conidia (8.5–25.5 × 5.7–17.9 μm). Phylogenetically, T.strophariensis forms a distinct clade and is closely related to T.viridistromatis, T.britannicum, and T.aerugineum with 100% ML and 0.90 BYPP statistical support (Fig. 1).

Holotype.

HGUP 24-0001.

Etymology.

The specific epithet ‘strophariensis’ refers to the occurrence of the new taxon in cultivated mushrooms Strophariarugosoannulata.

Description.

Stromata, when fresh 1–14 mm in diameter, 1–11 mm thick (n = 10), solitary to sometimes aggregated, discoid or undulate, with brownish margin and pale red, depressed center when young, becoming reddish with rugose surface when mature. Attached to the host by hyphae, easily detached; sides often attenuated downward, surrounded at the base by white cottony mycelium when young. Surface finely rugose, tubercular, brownish between black ascomata; Ostiolar dots are convex to umbilicate, greenish, overall colors light green, darker green when dry, surface and spores green when mature. Ostiole 14–21 μm wide at apex, 41–59 μm high (n = 30). Ascomata (139–)175–295(–347) × (113–)151–248(–290) μm (n = 20), flask-shaped or sub-globose, crowded. Peridium 18–28 μm thick at the base and sides (n = 40), light brown. Asci (67–)110–146(–207) × (3.7–)5.8–7.7(–9.4) μm, stipe (3–)7–11(–18) μm long (n = 50), containing 16-ascospores, apex slightly thickened, hyaline, cylindrical. Ascospores (8.4–)9.2–11.6(–16.9) × (5.5–)6.6–7.8(–8.1) μm, l/w (1.2–)1.4–1.6(–2.1) (n = 90), green, verruculose; sub-globose, oblong, elongated, thick-walled.

Culture characteristics.

Optimal growth at 25 °C on all media, poor and limited growth at 30 °C, no growth at 35 °C.

On MEA and PDA growth is slow, colony creamy white, finely farinose by scant effuse conidiation; on PDA reverse brownish, surface turning greenish-brown. On MEA at 25 °C after five days colony radius 5–7 mm; colony circular, dense, thick, first whitish, becoming zonate after a few weeks, turning olive-green to brown with yellow greenish, farinose center; conidiation effuse, on short odd verticillium like conidiophores. On SNA colony radius at 25 °C after 2 weeks 6–9 mm; colony dense, hyaline, turning greenish or olivaceous from conidia. Conidiation following growth, effuse, on aerial hyphae and short odd verticillium-like conidiophores, spreading from the plug. Conidiophores simple, 1–4 level are branched and tapered at the tips, bearing few asymmetric side branches, terminated by solitary phialides of 2–3 divergent phialides. Phialides (10.5–)37–44(–55) × (1.5–)2.5–11(–12.5) μm (n = 50), mostly gregarious, cylindrical, less commonly subfusiform, often thickest near the base. Conidia (8.5–)12.5–16.4(–25.5) × (5.7–)6.5–10.7(–17.9) μm (n = 70), one-celled, variable shape and size, typically oblong and pale olive green when fully mature, sub-globose, oval or ellipsoid and hyaline when immature, straight or slightly curved, sides sometimes pinched, smooth; base often truncate, thick-walled.

Habitat.

On mushroom cultivated field, associated with Strophariarugosoannulata.

Distribution.

China, Guizhou Province, Guiyang City, and Liupanshui City; Guizhou City in Anshun Province.

Material examined.

China • Guizhou, Liupanshui City, Shuicheng District, 23°55'39.36"N, 120°11'30.64"E, on soil surfaces of Strophariarugosoannulata cultivated field, 16-November-2023, E. Tarafder and F.H. Tian (HGUP 24-0001, holotype); ex-type living cultures GUCC TB1117, GUCC TB1118 and GUCC TB1119.

GenBank accession numbers.

GUCC TB1117 (ITS: PP920011; rpb2: PP954941; tef1-α: PP954947); GUCC TB1118 (ITS: PP920012; rpb2: PP954942; tef1-α: PP954948); GUCC TB1119 (ITS: PP920013; rpb2: PP954943; tef1-α: PP954949).

Notes.

Morphologically, our new isolates are most similar to T.danicum in the size of stromata (5–20 mm) but can be distinguished by its generally smaller ascospores and conidia (Table 3); the presence of deeper color of stromata and ascospores, less pigment on media, and faster growth rate on PDA and SNA. However, our new isolates differ from T.britannicum by smaller stromata (0.9–2.2 mm) with dark green surfaces (Jaklitsch, 2009). In addition, it differs from other new species (T.viridistromatis) in producing cylindrical, less commonly subfusiform phialides (10.5–55 × 1.5–12.5 μm) and larger conidia (8.5–25.5 × 5.7–17.9 μm), typically oblong, subglobose, oval, sometimes ellipsoid and pale olive green after maturity. Phylogenetically, our isolate (HGUP 24-0001) forms an independent clade and clustering with Trichodermabritannicum, T.aerugineum, T.danicum, T.viridistromatis, and T.spinulosum within the Spinulosum lineage with 100% ML and 1.00 BYPP statistical support (Fig. 2). It exhibits 4% sequence differences (28/610 nucleotides, four gaps) in the ITS region, 4% differences (48/1080 nucleotides, no gaps) in the rpb2 gene, and 5% differences (64/1244 nucleotides, twenty-five gaps) in tef1-α gene when compared with T.britannicum. Additionally, the differences between our isolate with T.viridistromatis are 4% (29/610 nucleotides, four gaps) in the ITS region, 4% (46/1080 nucleotides, no gaps) differences in the rpb2 gene, and 5% (65/1244 nucleotides, twenty-five gaps) differences in the tef1-α gene. In contrast, the differences in our isolate with T.danicum are more than 4% (25/610 nucleotides, eight gaps) in the ITS region, 9% (99/1080 nucleotides, no gaps) in rpb2 gene, and 8% (105/1244 nucleotides, three gaps) in tef1-α gene (Table 2). Therefore, based on both morphological and phylogenetic distinctions, T.strophariensis is introduced as a new species from cultivated mushrooms.

Table 3.

Morphological comparison of Trichodermabritannicum, T.aerugineum, T.strophariensis, T.danicum, T.viridistromatis, and T.spinulosum.

Taxon (holotype) Ascospores Conidia Substratum References
T.britannicum 10–16 × 4.5–6.2 μm 4.7–19.3 × 4–6.2 μm Decaying wood of broadleaf trees Jaklitsch et al. 2014
T.aerugineum 8–12 × 4–6 µm 3–5 × 2–4 µm Decaying wood Chaverri and Samuels (2004)
T.strophariensis 8.4–16.9 × 5.5–8.1 µm 8.5–25.5 × 5.7–17.9 μm mushroom species (Stropharia) This study
T.danicum 3–5 × 2.5–4.4 µm 3–3.5 × 2.7–3 µm On pine wood Jaklitsch 2009
T.viridistromatis 3.4–5.6 × 2.4–3.3 µm 2.8–4 × 1.7–3.2 µm mushroom species (Stropharia) This study
T.spinulosum 5–7 × 3–4 μm 3.5–4.7 × 3–3.7 μm On stems of Chelidoniummajus Jaklitsch and Voglmayr 2015

. Trichoderma viridistromatis

E. Tarafder & F.H. Tian sp. nov.

6C4FE537-E9C8-585A-8384-1E1B8AF4AC09

Fungal Names: FN 902312

Figs 5 , 6

Figure 5.

Figure 5.

Morphology of Trichodermaviridistromatis (HGUP 24-0004, GUCC 24-0005) a, b diseased in the field, c fresh stromata on natural substrate d cortical and subcortical tissues e ascomatal tissue in section f asci with ascospores g, h ascospores. Scale bars: 10 mm (a–c); 1,000 μm (d); 50 μm (e); 20 μm (f–h).

Figure 6.

Figure 6.

a cultures on MEA (five days) b cultures on PDA (five days) c cultures on SNA (four days) d conidiophores e phialides f conidia. Scale bars: 10 μm (d, e); 5 μm (f).

Diagnosis.

Trichodermaviridistromatis differs from T.aerugineum by its smaller stromata (0.5–2 mm diam, to ca. 1 mm thick in T.aerugineum) and bigger phialides measuring 7–23 × 2.4–4 μm in T.aerugineum. In addition, it is easily distinguished from T.strophariensis by its smaller ascospores (3.4–5.6 × 2.4–3.3 µm) and conidia (2.8–4 × 1.7–3.2 μm). Phylogenetically, T.viridistromatis forms a distinct clade and is closely related to T.strophariensis, T.britannicum, and T.aerugineum with 100% ML and 0.90 BYPP statistical support (Fig. 1).

Holotype.

HGUP 24-0004.

Etymology.

The epithet “viridistromatis” refers to an entirely green-colored stroma.

Description.

Stromata, when fresh 1–7 mm in diam., 0.5–2 mm thick (n = 10), mostly gregarious, aggregated, discoid or undulate, becoming pulvinate, compact; outline circular to oblong; margin attached or free, surface smooth when immature without ostiolar dots, with yellowish margin and pale red, depressed center when young, becoming reddish with rugose surface when mature. Outline circular, oblong or irregularly lobed. Surface smooth, tubercular or rugose, when young finely velvety. Ostiolar dots absent, ostiolar openings sometimes visible, (16–)20–30(–32) μm (n = 30) wide, inconspicuous, pale, more distinct and shinier after rehydration. Ostioles (18–)24–30(–45) μm long, plane with the surface, (8–)12–19(–23) μm wide at the apex (n = 30). Ascomata (69–)75–85(–96) × (36–)41–55(–60) μm (n = 30), numerous, 5–7 per mm stroma length, sub-globose or flask-shaped. Peridium (7–)11–19(–22) μm (n = 60) thick at the base and sides; hyaline to pale yellowish. Asci (63–)74–81(–85) × (3.2–)4.2–5(–5.5) μm, stipe (4–)5–11(–14) μm (n = 30) long, containing 16-ascospores, apex not thickened, hyaline, cylindrical. Ascospores (3.4–)3.6–4.3(–5.6) × (2.4–)2.8–3.1(–3.3) μm, l/w 1–1.1(–1.2) (n = 34), hyaline, verruculose, single-celled, non-septate, sub-globose, oblong or slightly tapered downwards, thick-walled.

Culture characteristics.

Optimal growth at 25 °C on all media, poor and limited growth at 30 °C, no growth at 35 °C. Although MEA exhibited good growth, precultures were made on it.

On MEA and PDA, growth is slow, colony is creamy white, finely farinose by scant effuse conidiation; on PDA, reverse brownish, surface turning greenish-brown. On MEA at 25 °C after five days colony radius 5–7 mm; colony circular, dense, thick, first whitish, becoming zonate after a few weeks, turning olive-green to brown with yellow-greenish, farinose center; conidiation effuse, on short odd verticillium like conidiophores. On SNA colony radius at 25 °C after 2 weeks 6–9 mm; colony dense, hyaline, turning greenish or olivaceous from conidia. Conidiation following growth, effuse, on aerial hyphae and short odd verticillium-like conidiophores, spreading from the plug. Conidiophores simple, 1–4 level, are branched and tapered at the tips, bearing few asymmetric side branches, terminated by solitary phialides of 2–3 divergent phialides. Phialides (5.5–)7–10(–14) × (1.6–)2.5–2.9(–3.5) μm (n = 32), mostly gregarious, lageniform, less commonly subfusiform, not thickest near the base. Conidia (2.8–)3.1–3.7(–4) × (1.7–)2.2–2.7(–3.2) μm (n = 70), variable shape and size, typically oblong and pale yellowish green when fully mature, oval, ellipsoid and hyaline when immature, straight or slightly curved, sides sometimes pinched, smooth; base often truncate.

Habitat.

On mushroom cultivated field, associated with Strophariarugosoannulata.

Distribution.

China, Guizhou Province, Guiyang City, and Liupanshui City; Guizhou City in Anshun Province.

Material examined.

China • Guizhou, Liupanshui City, Shuicheng District, 24°55'39.936"N, 121°11'30.264"E, on soil surfaces of Strophariarugosoannulata cultivated field, 16-November-2023, E. Tarafder and F.H. Tian (HGUP 24-0004, holotype); ex-type living cultures GUCC TB1120, GUCC TB1121 and GUCC TB1122.

GenBank accession numbers.

GUCC TB1120 (ITS: PP922277; rpb2: PP954944; tef1-α: PP954950); GUCC TB1121 (ITS: PP926290; rpb2: PP954945; tef1-α: PP954951); GUCC TB1122 (ITS: PP922285; rpb2: PP954946; tef1-α: PP954952)

Notes.

Morphologically, our newly described taxon Trichodermaviridistromatis shares common characteristics with T.aerugineum (CBS120541) and T.britannicum, a species previously isolated from dead stems and leaves of Calamagrostisepigejos. However, T.viridistromatis differs from T.aerugineum by having smaller stromata (0.5–2 mm in diameter, compared to ca. 1 mm thick in T.aerugineum) and larger phialides (7–23 × 2.4–4 μm in T.aerugineum) and ascospores (8–12 × 4–6 µm; Table 4) (Chaverri and Samuels 2004). Additionally, it can be distinguished from T.strophariensis by its larger stromata (1–14 mm in diameter, 1–11 mm thick in T.strophariensis) and significantly larger subglobose to elongated ascospores (8.4–16.9 × 5.5–8.1 µm). In comparison, T.britannicum has discoid, convex to turbinate stromata surrounded by light brown radial mycelium and much larger one-celled ascospores (10–16 × 4.5–6.2 μm; Table 4) (Jaklitsch et al. 2014). The phylogenetic positions of the new taxon (Fig. 2) demonstrated that Trichodermaviridistromatis is closely related to T.strophariensis, T.britannicum, and T.aerugineum, with strong statistical support (Fig. 2). However, our isolate differs from T.britannicum with 3% (17/610 nucleotides, with five gaps) in ITS region, 2% (20/1080 nucleotides, no gaps) in rpb2 gene, and 4% (55/1244 nucleotides, twenty-one gaps) in tef1-α gene. Moreover, the difference in our collections with T.aerugineum is more than 2% (10/610 nucleotides, ten gaps) in the ITS region, 7% (79/1080 nucleotides, no gaps) in the rpb2 gene, and 6% (78/1244 nucleotides, eleven gaps) in tef1-α gene (Table 2). Additionally, the differences between our isolate with T.strophariensis are 4% (29/610 nucleotides, four gaps) in ITS region, 4% (46/1080 nucleotides, no gaps) differences in rpb2 gene, and 5% (65/1244 nucleotides, twenty-five gaps) differences in tef1-α gene also supported T.viridistromatis to be a distinct species compared to T.strophariensis and T.britannicum respectively.

Table 4.

Morphological comparison of Trichodermabritannicum, T.aerugineum, T.viridistromatis, T.spinulosum, and T.strophariensis.

Taxon (holotype) Ascospores Conidia Substratum References
T.britannicum 10–16 × 4.5–6.2 μm 4.7–19.3 × 4–6.2 μm Decaying wood of broadleaf trees Jaklitsch et al. 2014
T.aerugineum 8–12 × 4–6 µm 3–5 × 2–4 µm Decaying wood Chaverri and Samuels (2004)
T.viridistromatis 3.4–5.6 × 2.4–3.3 µm 2.8–4 × 1.7–3.2 μm mushroom species (Stropharia) This study
T.spinulosum 5–7 × 3–4 µm 3.5–4.7 × 3–3.7 µm On stems of Chelidoniummajus Jaklitsch and Voglmayr 2015
T.strophariensis 8.4–16.9 × 5.5–8.1 µm 8.5–25.5 × 5.7–17.9 μm mushroom species (Stropharia) This study

Discussion

Green mold is a prevalent disease in mushroom cultivation that disrupts the average growth of mushroom fruiting bodies or mycelium and inhibits the average growth of mushrooms (Zeng et al. 2022). The discovery of two new Trichoderma species causing green mold disease significantly advances our understanding of fungal pathogens in mushroom cultivation. This finding underscores the urgent need for effective disease management strategies in agriculture. The pathogenicity of HGUP 24-0001 and HGUP 24-0004 on Strophariarugosoannulata was confirmed in controlled field tests, where both strains caused symptoms consistent with green mold disease. The rapid development of green mycelia covering the mushroom trays fulfilled Koch’s postulates. In this study, the rapid colonization of mushroom trays by green mycelia is a clear indicator of the aggressive interaction between the pathogens and the host, a situation of intense concern, leading to significant damage to the mushroom fruiting bodies. The occurrence of mold diseases affecting S.rugosoannulata, highlights the significant economic losses due to fungal infections in mushroom cultivation (Huang et al. 2023). The infection rate of both isolates in the mushroom trays mirrors their incidence in the field, indicating a potentially significant agricultural impact. A detailed observation of symptoms, from initial mycelial growth to full substrate colonization, provides a comprehensive timeline of disease progression and is crucial for effective disease management in mushroom cultivation (Zhang et al. 2022).

Morphological analysis of the newly identified Trichoderma species revealed distinct characteristics. The typical symptoms of green mold disease were greenish mycelial growth and rotting of the fruiting bodies of the mushrooms. Moreover, molecular phylogenetic analyses of the nuclear ribosomal internal transcribed spacer (nrITS) region, the second largest subunit of RNA polymerase II (rpb2), the partial translation elongation factor 1-alpha (tef1-α) provided conclusive evidence for the delineation of the two new Trichoderma species, and these isolates were separated from previously identified and described species of T.britannicum, T.aerugineum, T.danicum, and T.spinulosum and properly placed within the distinct clades (Fig. 2). This molecular approach not only confirmed the novelty of the species but also highlighted the genetic diversity within the genus Trichoderma. This study successfully identified and described two new species of T.strophariensis and T.viridistromatis as the causal agents of green mold disease in Strophariarugosoannulata in Guizhou Province, China.

The discovery of these new pathogens emphasizes the need for continuous monitoring and research on fungal diseases affecting economically important mushrooms. Integrating morphological and molecular identification techniques provides a robust framework for identifying and characterizing new fungal pathogens, ultimately improving disease management practices. Future studies should continue to explore the agricultural and biotechnological potential of these and other Trichoderma species, contributing to a deeper understanding and sustainable management of fungal pathogens in agriculture. This new pathogen can infect the mycelia of S.rugosoannulata at an early stage and the entire fruit body at maturity, making it a challenging competitor in the field. However, our significant findings also reveal an unexpected diversity of Trichoderma in China, highlighting the need for further research and inspiring future investigations.

Supplementary Material

XML Treatment for Trichoderma strophariensis
XML Treatment for Trichoderma viridistromatis

Acknowledgements

Samantha C. Karunarathna thanks the “Yunnan Revitalization Talents Support Plan” (High-End Foreign Experts Program), the National Natural Science Foundation of China (NSFC 32260004), and the Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River for their support. The authors extend their appreciation to the Researchers Supporting Project (number RSP2024R56), King Saud University, Riyadh, Saudi Arabia.

Citation

Tarafder E, Wenjun Z, Karunarathna SC, Elgorban AM, Huilian M, Nan W, Zeng X, Yong W, Tian F-H (2024) Unveiling two new species of Trichoderma (Hypocreales, Hypocreaceae) that cause green mold disease on Stropharia rugosoannulata from Guizhou Province, China. MycoKeys 110: 361–383. https://doi.org/10.3897/mycokeys.110.134154

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

This research was funded by Guizhou Provincial Basic Research Program (Natural Science) ZK[2023] general 087 and the National Natural Science Foundation of China, grant number NSFC 32000013 & 32260044; Guizhou Provincial Support Fund of Science and Technology, grant number Support of QKH [2021] General 199; Guizhou Department, grant number Qianjiaoji [2022] 071; Guizhou Province Edible Fungi Industry Technology System (GZMARS-SYJ-2024-2026); Researchers Supporting Project (number RSP2024R56), King Saud University, Riyadh, Saudi Arabia.

Author contributions

Conceptualization, ET., FT; Data curation, ET., ZW., MH, FT.; Formal analysis, ET., FT., XZ., SCK.; Investigation, ET., ZW., FT.; Methodology, ET., ZW., SCK., WN., YW.; Project administration and resources, FT.; Software, ET., SCK., AME, MH, XZ.; Supervision, FT.; Writing original draft, ET.; Writing review and editing, ET., SCK., AME., WN., YW., XZ.; Funding acquisition, FT., XZ.; The first draft of the manuscript was written by ET and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.

Author ORCIDs

Entaj Tarafder https://orcid.org/0000-0002-3680-3433

Zhang Wenjun https://orcid.org/0009-0005-8310-0537

Samantha C. Karunarathna https://orcid.org/0000-0001-7080-0781

Abdallah M. Elgorban https://orcid.org/0000-0003-3664-7853

Man Huilian https://orcid.org/0009-0006-7894-1873

Wu Nan https://orcid.org/0009-0006-1192-4171

Xiangyu Zeng https://orcid.org/0000-0003-1341-1004

Wang Yong https://orcid.org/0000-0003-3831-2117

Feng-Hua Tian https://orcid.org/0000-0002-6962-9531

Data availability

Sequence data generated for the present study have been deposited in GenBank with the accession number(s) can be found below: https://www.ncbi.nlm.nih.gov/genbank/, GUCC TB1117 (ITS: PP920011; rpb2: PP954941; tef1-α: PP954947); GUCC TB1118 (ITS: PP920012; rpb2: PP954942; tef1-α: PP954948); GUCC TB1119 (ITS: PP920013; rpb2: PP954943; tef1-α: PP954949); GUCC TB1120 (ITS: PP922277; rpb2: PP954944; tef1-α: PP954950); GUCC TB1121 (ITS: PP926290; rpb2: PP954945; tef1-α: PP954951); GUCC TB1122 (ITS: PP922285; rpb2: PP954946; tef1-α: PP954952). All of the data that support the findings of this study are available in the main text.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

XML Treatment for Trichoderma strophariensis
XML Treatment for Trichoderma viridistromatis

Data Availability Statement

Sequence data generated for the present study have been deposited in GenBank with the accession number(s) can be found below: https://www.ncbi.nlm.nih.gov/genbank/, GUCC TB1117 (ITS: PP920011; rpb2: PP954941; tef1-α: PP954947); GUCC TB1118 (ITS: PP920012; rpb2: PP954942; tef1-α: PP954948); GUCC TB1119 (ITS: PP920013; rpb2: PP954943; tef1-α: PP954949); GUCC TB1120 (ITS: PP922277; rpb2: PP954944; tef1-α: PP954950); GUCC TB1121 (ITS: PP926290; rpb2: PP954945; tef1-α: PP954951); GUCC TB1122 (ITS: PP922285; rpb2: PP954946; tef1-α: PP954952). All of the data that support the findings of this study are available in the main text.


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