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[Preprint]. 2024 Nov 25:2024.11.22.624939. [Version 1] doi: 10.1101/2024.11.22.624939

Key Regulatory Elements of the TGFβ-LRRC15 Axis Predict Disease Progression and Immunotherapy Resistance Across Cancer Types

Claire M Storey, Michael Cheng, Mohamed Altai, Julie E Park, Julie Tran, Smiths S Lueong, Daniel Thorek, Liqun Mao, Wahed Zedan, Constance Yuen, Alexander Ridley, Marija Trajovic-Arsic, Ken Herrmann, Sumit K Subuhdi, Bilal A Siddiqui, Katharina Lückerath, Jens Siveke, Robert Damoiseaux, Xia Yang, David Ulmert
PMCID: PMC11623513  PMID: 39651139

ABSTRACT

Transforming growth factor-beta (TGFβ) has dual roles in cancer, initially suppressing tumors but later promoting metastasis and immune evasion. Efforts to inhibit TGFβ have been largely unsuccessful due to significant toxicity and indiscriminate immunosuppression. Leucine-rich repeat-containing protein 15 (LRRC15) is a TGFβ-regulated antigen expressed by mesenchymal-derived cancer cells and cancer-associated fibroblasts (CAFs). In preclinical studies, ablation of TGFβ-driven LRRC15+ CAFs increased tumor infiltration of CD8+ T cells. However, the underlying pathobiological mechanisms prompting TGFβ’s upregulation of LRRC15 expression are unclear. Using an integrated approach combining functional compound screening with single-cell RNA sequencing, we reveal key genomic features regulating TGFβ’s ability to increase LRRC15 expression on cancer cells. Construction of gene regulatory networks converged our analyses on four key genes— MMP2, SPARC, TGF β R2, and WNT5B —central to TGFβ-induced LRRC15 pathobiology. Validation of these genes in cell models and their use in predicting immunotherapy responses highlight their potential in refining immunotherapy strategies and personalizing co-treatment options.

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